View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5897_low_26 (Length: 255)
Name: NF5897_low_26
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5897_low_26 |
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| [»] chr1 (6 HSPs) |
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| [»] scaffold0042 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 14757445 - 14757207
Alignment:
| Q |
17 |
ataatatgtgtgtgtacatgtatatatggtgtgagaagattattgctatacctgaataagcaccaatggagtgttaagcatatctgaagaaccaggaaca |
116 |
Q |
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| T |
14757445 |
ataatatgtgggtgtacatgtatatatggtgtgagaagattattgctatacctgaataagcagcaatggagtgttaagcatatctgaagaaccaggaaca |
14757346 |
T |
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| Q |
117 |
tcataaagaagctcatctatgcaaggaaatggaggatgaagatcttcaccaaattctttcaaactaacatcagcatcagcttcaataaacaaaacacctt |
216 |
Q |
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| T |
14757345 |
tcataaagaagctcatctatgcaaggaaatggaggatgaagatcttcaccaaattctttcaaactaacatctgcatcagcttcaataaacaaaacacctt |
14757246 |
T |
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| Q |
217 |
caccattacaatcaaccataagtttcctaccaggacctt |
255 |
Q |
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| T |
14757245 |
ctccagtgcaatccaccataagtttcctacccggacctt |
14757207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 63 - 255
Target Start/End: Original strand, 14789521 - 14789713
Alignment:
| Q |
63 |
tatacctgaataagcaccaatggagtgttaagcatatctgaagaaccaggaacatcataaagaagctcatctatgcaaggaaatggaggatgaagatctt |
162 |
Q |
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|||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14789521 |
tatacctgaataagcagcaatggagtgttaagcacaactgaagaaccaggaacatcataaagaagctcatctatgcaaggaaatggaggatgaagatctt |
14789620 |
T |
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| Q |
163 |
caccaaattctttcaaactaacatcagcatcagcttcaataaacaaaacaccttcaccattacaatcaaccataagtttcctaccaggacctt |
255 |
Q |
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| T |
14789621 |
caccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatccaccataagtttcctacttggacctt |
14789713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 62 - 255
Target Start/End: Original strand, 14879963 - 14880156
Alignment:
| Q |
62 |
ctatacctgaataagcaccaatggagtgttaagcatatctgaagaaccaggaacatcataaagaagctcatctatgcaaggaaatggaggatgaagatct |
161 |
Q |
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||||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||| | |
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| T |
14879963 |
ctatacctgaataagcatcaatggagtgttaatcacatctgaagaaccaggaacataataaagaagctcatccaagcaaggaaatggaggatgaagagca |
14880062 |
T |
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| Q |
162 |
tcaccaaattctttcaaactaacatcagcatcagcttcaataaacaaaacaccttcaccattacaatcaaccataagtttcctaccaggacctt |
255 |
Q |
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| T |
14880063 |
tcaccaaactctttaagagtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggacctt |
14880156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 64 - 255
Target Start/End: Original strand, 14769473 - 14769664
Alignment:
| Q |
64 |
atacctgaataagcaccaatggagtgttaagcatatctgaagaaccaggaacatcataaagaagctcatctatgcaaggaaatggaggatgaagatcttc |
163 |
Q |
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|||||||||| | || ||||||| |||||||| ||||||||||||||||||||| ||||||||||||| | |||||||| ||||| |||||| | || |
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| T |
14769473 |
atacctgaatcaccaacaatggacagttaagcacttctgaagaaccaggaacatcaaaaagaagctcatccaaacaaggaaaaggaggttgaagagcatc |
14769572 |
T |
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| Q |
164 |
accaaattctttcaaactaacatcagcatcagcttcaataaacaaaacaccttcaccattacaatcaaccataagtttcctaccaggacctt |
255 |
Q |
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| T |
14769573 |
accaaattctttcaaactaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggacctt |
14769664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 62 - 255
Target Start/End: Original strand, 14874677 - 14874870
Alignment:
| Q |
62 |
ctatacctgaataagcaccaatggagtgttaagcatatctgaagaaccaggaacatcataaagaagctcatctatgcaaggaaatggaggatgaagatct |
161 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| | ||| ||||||||||||||||| |
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| T |
14874677 |
ctatacctgaataagcagcaatggagtgttaagcacatctgaagaaccaagaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagta |
14874776 |
T |
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| Q |
162 |
tcaccaaattctttcaaactaacatcagcatcagcttcaataaacaaaacaccttcaccattacaatcaaccataagtttcctaccaggacctt |
255 |
Q |
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| T |
14874777 |
tcacccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggacctt |
14874870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 36307216 - 36307158
Alignment:
| Q |
183 |
acatcagcatcagcttcaataaacaaaacaccttcaccattacaatcaaccataagttt |
241 |
Q |
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| T |
36307216 |
acatcagcatctgcctcaatgaacataacaccttctccattacaatccaccatgagttt |
36307158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 65 - 255
Target Start/End: Original strand, 91636 - 91826
Alignment:
| Q |
65 |
tacctgaataagcaccaatggagtgttaagcatatctgaagaaccaggaacatcataaagaagctcatctatgcaaggaaatggaggatgaagatcttca |
164 |
Q |
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|||||||||||||| ||||||||||||||| | |||||||||||||||||||||||| | ||||||| | | ||| ||||||||||||||||| | ||| |
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| T |
91636 |
tacctgaataagcagcaatggagtgttaagaacatctgaagaaccaggaacatcatagataagctcacccaagcatggaaatggaggatgaagtgcatca |
91735 |
T |
|
| Q |
165 |
ccaaattctttcaaactaacatcagcatcagcttcaataaacaaaacaccttcaccattacaatcaaccataagtttcctaccaggacctt |
255 |
Q |
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| T |
91736 |
ccaaattgtttaagagtaacatcagcatcagcttcaataaacaaaacaccttctccagtacaatcaaccataagtttcctgccgggacctt |
91826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 121 - 255
Target Start/End: Complemental strand, 14857695 - 14857561
Alignment:
| Q |
121 |
aaagaagctcatctatgcaaggaaatggaggatgaagatcttcaccaaattctttcaaactaacatcagcatcagcttcaataaacaaaacaccttcacc |
220 |
Q |
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||||||||||||| | |||||||| ||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
14857695 |
aaagaagctcatccaaacaaggaaaaggaggttgaagagcatcaccaaattctttcaaactaacatcagcatcagcttcaataaacaaaataccttcatc |
14857596 |
T |
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| Q |
221 |
attacaatcaaccataagtttcctaccaggacctt |
255 |
Q |
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| T |
14857595 |
attacaatctaccataagcttcctaccaggacctt |
14857561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 47240881 - 47240829
Alignment:
| Q |
183 |
acatcagcatcagcttcaataaacaaaacaccttcaccattacaatcaaccat |
235 |
Q |
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| T |
47240881 |
acatcagcttcagcttcaatgaacatgacaccttcaccagtacaatccaccat |
47240829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 47282232 - 47282148
Alignment:
| Q |
137 |
gcaaggaaatggaggatgaagatcttcaccaaattctttcaaactaacatcagcatcagcttcaataaacaaaacaccttcacca |
221 |
Q |
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|||||| ||||| ||||||||| | ||||||||||| || | | |||||||| ||||||||||| |||| |||||||||||| |
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| T |
47282232 |
gcaagggaatgggggatgaagagcatcaccaaattcattaagtgttacatcagcttcagcttcaatgaacatgacaccttcacca |
47282148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 47296312 - 47296364
Alignment:
| Q |
183 |
acatcagcatcagcttcaataaacaaaacaccttcaccattacaatcaaccat |
235 |
Q |
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| T |
47296312 |
acatcagcttcagcttcaatgaacatgacaccttcaccagtacaatccaccat |
47296364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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