View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5897_low_27 (Length: 252)
Name: NF5897_low_27
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5897_low_27 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 42190918 - 42190681
Alignment:
| Q |
11 |
cacagatgggatgcataaagttgaggagtccataactgctgtaatgagagttggtttgtcatgtgagaggccttatcaaaattgcatggaattaatccat |
110 |
Q |
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| T |
42190918 |
cacagatgggatgcataaagttgaggagtccataactgctgtaatgagagttggtttgtcatgtgagaggccttatcaaaattgcatggaattaagccat |
42190819 |
T |
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| Q |
111 |
ctatcttggcttgtgatgttggtctcattccttctatacatgtttaatctgtctgtactaaccgatgcaatctatacgtgtttgtaataactaataagtc |
210 |
Q |
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| T |
42190818 |
ctatcttggcttgtgatgttggtctcattccttctatacatgtttaat----ctgtactaaccgatgcaatctatacgtgtttgtaataactaataagtc |
42190723 |
T |
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| Q |
211 |
tcatgtgcttccatataaataaataaaaatatacatgagtac |
252 |
Q |
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| T |
42190722 |
tcatgtgcttccatataaataaataaaaatatacatgagtac |
42190681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 162
Target Start/End: Complemental strand, 42209360 - 42209267
Alignment:
| Q |
70 |
catgtgagaggccttatcaaaattgcatggaattaatccatctat-cttggcttgtgatgttggtctcattccttctatacatgtttaatctgt |
162 |
Q |
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| T |
42209360 |
catgagagaagccttatcaaaattgcatggaattaagcagtctatactaggcttgtgatgttggtctgatgcctgctatacttgtataatctgt |
42209267 |
T |
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