View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5897_low_29 (Length: 251)

Name: NF5897_low_29
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5897_low_29
NF5897_low_29
[»] chr4 (19 HSPs)
chr4 (96-251)||(42475795-42475946)
chr4 (96-167)||(50544255-50544326)
chr4 (96-163)||(23655299-23655366)
chr4 (96-168)||(7061970-7062042)
chr4 (96-168)||(11789857-11789929)
chr4 (96-168)||(17914979-17915051)
chr4 (99-161)||(46993072-46993134)
chr4 (96-166)||(54316060-54316130)
chr4 (99-166)||(3556366-3556433)
chr4 (96-162)||(32591165-32591231)
chr4 (129-166)||(21785719-21785756)
chr4 (101-166)||(24673957-24674022)
chr4 (96-164)||(5465855-5465923)
chr4 (96-160)||(50551483-50551547)
chr4 (107-166)||(35256142-35256201)
chr4 (98-153)||(1025139-1025194)
chr4 (98-168)||(8538360-8538430)
chr4 (96-166)||(9551456-9551526)
chr4 (101-166)||(30379315-30379380)
[»] chr5 (10 HSPs)
chr5 (96-168)||(31194196-31194268)
chr5 (96-166)||(31193965-31194035)
chr5 (98-166)||(36955303-36955371)
chr5 (96-166)||(17370067-17370137)
chr5 (96-168)||(8754656-8754728)
chr5 (96-166)||(14076900-14076970)
chr5 (98-168)||(32347130-32347200)
chr5 (96-166)||(36955525-36955595)
chr5 (96-166)||(9862223-9862293)
chr5 (104-159)||(39635042-39635096)
[»] chr7 (11 HSPs)
chr7 (96-166)||(19318379-19318449)
chr7 (98-166)||(19318452-19318520)
chr7 (96-166)||(35207178-35207248)
chr7 (96-166)||(35207406-35207476)
chr7 (98-166)||(25048257-25048325)
chr7 (96-167)||(2834430-2834501)
chr7 (96-166)||(35363318-35363388)
chr7 (104-165)||(3740644-3740705)
chr7 (98-158)||(39983870-39983930)
chr7 (129-166)||(26903432-26903468)
chr7 (99-160)||(29474646-29474707)
[»] chr6 (7 HSPs)
chr6 (96-169)||(16125519-16125592)
chr6 (96-166)||(22748588-22748658)
chr6 (98-159)||(11014554-11014615)
chr6 (98-166)||(16125755-16125823)
chr6 (96-166)||(6705213-6705283)
chr6 (97-166)||(22748820-22748889)
chr6 (129-166)||(33277315-33277352)
[»] chr3 (10 HSPs)
chr3 (96-165)||(4041414-4041483)
chr3 (96-161)||(53197214-53197279)
chr3 (96-166)||(8799317-8799387)
chr3 (96-166)||(38499819-38499889)
chr3 (96-157)||(43797361-43797422)
chr3 (96-166)||(53196988-53197058)
chr3 (97-166)||(38500053-38500122)
chr3 (98-159)||(43797585-43797646)
chr3 (98-160)||(25349943-25350005)
chr3 (96-157)||(29828912-29828973)
[»] chr8 (10 HSPs)
chr8 (96-166)||(15009089-15009159)
chr8 (96-166)||(8489373-8489443)
chr8 (96-166)||(6911029-6911099)
chr8 (96-166)||(14999171-14999241)
chr8 (98-166)||(16324844-16324912)
chr8 (96-166)||(43801470-43801540)
chr8 (96-166)||(43801702-43801772)
chr8 (98-166)||(41403993-41404061)
chr8 (96-150)||(22781071-22781125)
chr8 (99-167)||(16325080-16325148)
[»] chr2 (13 HSPs)
chr2 (96-166)||(4371454-4371524)
chr2 (96-166)||(21265793-21265863)
chr2 (96-166)||(22563210-22563280)
chr2 (98-166)||(29893030-29893098)
chr2 (96-167)||(22563441-22563512)
chr2 (96-166)||(12232563-12232633)
chr2 (96-166)||(20296647-20296717)
chr2 (96-168)||(21265561-21265633)
chr2 (96-167)||(34645546-34645617)
chr2 (96-166)||(17200078-17200148)
chr2 (96-166)||(34645777-34645847)
chr2 (96-143)||(17200309-17200356)
chr2 (97-165)||(4682757-4682825)
[»] chr1 (13 HSPs)
chr1 (96-165)||(27171800-27171869)
chr1 (98-159)||(49777056-49777117)
chr1 (96-167)||(24882970-24883041)
chr1 (97-168)||(49776817-49776888)
chr1 (96-166)||(24883199-24883269)
chr1 (96-166)||(34622556-34622626)
chr1 (96-166)||(3385308-3385378)
chr1 (96-158)||(33156685-33156747)
chr1 (97-166)||(3385543-3385612)
chr1 (96-164)||(33400857-33400925)
chr1 (99-157)||(37948797-37948855)
chr1 (96-165)||(33401087-33401156)
chr1 (97-164)||(34969987-34970054)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 96 - 251
Target Start/End: Complemental strand, 42475946 - 42475795
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactcgtcttttcttaggaccattccatcttgat 195  Q
    ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| ||| ||    ||||||||||||||| |||||||||||||||||||    
T  42475946 gccacgtgtcttgcatccaaaccctaaatagagtaaatgaagcttagcctaaatggagtat----gaactcgtcttttctcaggaccattccatcttgat 42475851  T
Q  196 tcacaataaaaataataactgtttttcattctttctacaccgaaaaaagtgttata 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42475850 tcacaataaaaataataactgtttttcattctttctacaccgaaaaaagtgttata 42475795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 50544326 - 50544255
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactcg 167  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||| |||||||||    
T  50544326 gccacatgtcttgcatccaaaccctaaatagaataaatggagcttagcctaaatggagcatatccgaactcg 50544255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 23655299 - 23655366
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaa 163  Q
    ||||||||||||||||| ||||| ||||| |||||||||||||||| ||||||| |||||||||||||    
T  23655299 gccacatgtcttgcatctaaaccctaaatggaataaatgaagcttaacctaaatggagcatacccgaa 23655366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 7062042 - 7061970
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactcgt 168  Q
    ||||||||||||||||||||||| ||||| || |||||  || ||||||||||| ||||||||||||||||||    
T  7062042 gccacatgtcttgcatccaaaccataaatggagtaaatagaggttagcctaaatggagcatacccgaactcgt 7061970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 11789929 - 11789857
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactcgt 168  Q
    ||||||| ||||||||| ||||| ||||| || |||||||||||| |||||||| ||||||||||||||||||    
T  11789929 gccacatatcttgcatctaaaccctaaatggagtaaatgaagctttgcctaaatggagcatacccgaactcgt 11789857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 17914979 - 17915051
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactcgt 168  Q
    |||||||||||||||||||||| |||||| || |||||| | |||||||||||| ||||||| ||||||||||    
T  17914979 gccacatgtcttgcatccaaactttaaatggagtaaatggaacttagcctaaatggagcatatccgaactcgt 17915051  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 46993134 - 46993072
Alignment:
Q  99 acatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccg 161  Q
    |||| ||||||||||||||| ||||||||||||||| |||||| ||||||| |||||||||||    
T  46993134 acatatcttgcatccaaaccctaaatagaataaatggagcttaacctaaatggagcatacccg 46993072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 54316060 - 54316130
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||||||||||||||||| ||||| || |||||  |||||||||||||| ||||||||||| ||||    
T  54316060 gccacatgtcttgcatccaaaccctaaatggagtaaatagagcttagcctaaatggagcatacccggactc 54316130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 3556433 - 3556366
Alignment:
Q  99 acatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    |||||||||||||||||||||||||| || ||||||||| ||||| ||||| |||||| |||| ||||    
T  3556433 acatgtcttgcatccaaaccttaaatggagtaaatgaagtttagcttaaatggagcatgcccggactc 3556366  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 32591231 - 32591165
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccga 162  Q
    ||||||| | |||||| |||||||||||| || |||||| |||||| ||||||||||||||||||||    
T  32591231 gccacatattttgcatacaaaccttaaatggagtaaatggagcttaacctaaatagagcatacccga 32591165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 21785756 - 21785719
Alignment:
Q  129 taaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21785756 taaatgaagcttagcctaaatagagcatacccgaactc 21785719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 24673957 - 24674022
Alignment:
Q  101 atgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||| |||||||||  |||||||| ||||||||| ||||||||||| ||||||| ||||||||    
T  24673957 atgtcttacatccaaactctaaatagagtaaatgaagtttagcctaaatggagcatatccgaactc 24674022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 5465923 - 5465855
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaac 164  Q
    |||||||||||| |||| ||||| |||||  | |||||||| |||||||||||| ||||||||||||||    
T  5465923 gccacatgtcttacatctaaaccctaaatgaagtaaatgaaacttagcctaaatggagcatacccgaac 5465855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 50551483 - 50551547
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcataccc 160  Q
    ||||||| |||| |||||||||||||||| || ||||| ||| ||||||||||| ||||||||||    
T  50551483 gccacatatcttacatccaaaccttaaatggagtaaataaagtttagcctaaatggagcataccc 50551547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 35256201 - 35256142
Alignment:
Q  107 tgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    |||||||||||  ||||| || |||||| ||||||| |||||||||||||||||||||||    
T  35256201 tgcatccaaactctaaatggagtaaatgcagcttagtctaaatagagcatacccgaactc 35256142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 1025139 - 1025194
Alignment:
Q  98 cacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagag 153  Q
    ||||| ||||||||||||||  ||||| || |||||||||||||||| ||||||||    
T  1025139 cacatatcttgcatccaaactctaaattgagtaaatgaagcttagccaaaatagag 1025194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 8538360 - 8538430
Alignment:
Q  98 cacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactcgt 168  Q
    ||||||||||||||||||||| ||||| || |||||| |||| |  |||||| ||||||||| | ||||||    
T  8538360 cacatgtcttgcatccaaaccctaaatggactaaatggagctaatactaaatggagcatacctggactcgt 8538430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 9551456 - 9551526
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    |||| ||||||| ||||||| || ||||| || |||||| || |||| |||||| ||||||||||||||||    
T  9551456 gccaaatgtcttccatccaagccctaaatggagtaaatggagtttagtctaaatggagcatacccgaactc 9551526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 30379380 - 30379315
Alignment:
Q  101 atgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||||||||| ||||||||||| ||||| ||||| |   ||||| ||||||||||| ||||    
T  30379380 atgtcttgcatccaagccttaaatagactaaataaagctaatagtaaatggagcatacccggactc 30379315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 31194196 - 31194268
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactcgt 168  Q
    ||||||||||||||||||||||||||||| || |||||| |||||||||||||| ||||||||||||||||||    
T  31194196 gccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccgaactcgt 31194268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 31194035 - 31193965
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||||||||||||||||||||||| || |||||| |||||||||||||| ||||||||||||||||    
T  31194035 gccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 31193965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 36955371 - 36955303
Alignment:
Q  98 cacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||||||||||||||| ||||| || ||||||||||||||||||||| |||| |||||||||||    
T  36955371 cacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcctacccgaactc 36955303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 17370137 - 17370067
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||||||||||||||||| ||||| || |||||| || ||||| ||||| ||||||||||||||||    
T  17370137 gccacatgtcttgcatccaaaccctaaatggagtaaatggagtttagcataaatggagcatacccgaactc 17370067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 8754728 - 8754656
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactcgt 168  Q
    |||||||||||| |||||||||| |||||||| |||||| || |||| |||||| ||| ||||||||||||||    
T  8754728 gccacatgtcttccatccaaaccctaaatagagtaaatggagtttagtctaaatggaggatacccgaactcgt 8754656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 14076900 - 14076970
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||||||||||||||||| ||||| || |||||  | |||||||||||| ||||||| ||||||||    
T  14076900 gccacatgtcttgcatccaaaccctaaatggagtaaatagaacttagcctaaatggagcatatccgaactc 14076970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 32347130 - 32347200
Alignment:
Q  98 cacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactcgt 168  Q
    |||||||||| |||||||||||||||| || ||| || |||||||||||||| ||||||| | ||||||||    
T  32347130 cacatgtcttacatccaaaccttaaatggagtaattggagcttagcctaaatggagcatatctgaactcgt 32347200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 36955525 - 36955595
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||||||||| ||||||| |||||||| |||||  |||||||||||||| |||| ||||| |||||    
T  36955525 gccacatgtcttgcaaccaaaccctaaatagagtaaatagagcttagcctaaatggagcgtacccaaactc 36955595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 9862223 - 9862293
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||| ||||||||||||||| ||||| || |||| ||| |||| ||||||| |||||||||| |||||    
T  9862223 gccacatatcttgcatccaaaccctaaatggagtaaacgaaacttaccctaaatggagcatacccaaactc 9862293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 39635042 - 39635096
Alignment:
Q  104 tcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacc 159  Q
    |||| |||||||||| ||||| || || ||||||||||||||||||||||||||||    
T  39635042 tcttacatccaaaccctaaat-gagtatatgaagcttagcctaaatagagcatacc 39635096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 19318379 - 19318449
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||||||||||| ||||||||||| || ||||||||||||||||||||| ||||||||||||||||    
T  19318379 gccacatgtcttgcatctaaaccttaaatggagtaaatgaagcttagcctaaatggagcatacccgaactc 19318449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 19318452 - 19318520
Alignment:
Q  98 cacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||||||||| ||||||||||| || |||||| |||||||||||||| ||||||||||||||||    
T  19318452 cacatgtcttgcatctaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 19318520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 35207248 - 35207178
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||||||||||||||||| ||||| || |||||| |||||||||||||| ||  ||||||||||||    
T  35207248 gccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggaatatacccgaactc 35207178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 35207406 - 35207476
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||||||||||||||||| ||||| || |||||| || ||||||||||| ||||||| ||||||||    
T  35207406 gccacatgtcttgcatccaaaccctaaatggagtaaatggagtttagcctaaatggagcatatccgaactc 35207476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 25048257 - 25048325
Alignment:
Q  98 cacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||||||||||||| | |||||  | |||||| |||||||||||||| ||||||||||||||||    
T  25048257 cacatgtcttgcatccaaatcctaaatgaagtaaatggagcttagcctaaatggagcatacccgaactc 25048325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 2834430 - 2834501
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactcg 167  Q
    ||||||||| ||| ||||||||| ||||| ||||||||| | |||||||||||| |||||||||| ||||||    
T  2834430 gccacatgttttgtatccaaaccctaaatggaataaatggaacttagcctaaatggagcatacccaaactcg 2834501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 35363388 - 35363318
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||| ||||||| ||||  ||||| || |||||||| |||||||||||| ||||||||||||||||    
T  35363388 gccacatgtgttgcatctaaactctaaatggagtaaatgaaacttagcctaaatggagcatacccgaactc 35363318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 3740705 - 3740644
Alignment:
Q  104 tcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaact 165  Q
    |||| |||||||||||||||| |||||||| ||| ||| ||||||| |||||||||||||||    
T  3740705 tcttacatccaaaccttaaatggaataaataaagtttaacctaaattgagcatacccgaact 3740644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 39983870 - 39983930
Alignment:
Q  98 cacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatac 158  Q
    ||||||||||||||||||||| ||||| || |||||| ||||| |||||||| ||||||||    
T  39983870 cacatgtcttgcatccaaaccctaaatggagtaaatggagcttcgcctaaatggagcatac 39983930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 26903468 - 26903432
Alignment:
Q  129 taaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  26903468 taaatgaagcttagcctaaat-gagcatacccgaactc 26903432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 29474646 - 29474707
Alignment:
Q  99 acatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcataccc 160  Q
    ||||||||||||||||| |  |||||||| |||||| || ||||||||||| ||||| ||||    
T  29474646 acatgtcttgcatccaagctctaaatagagtaaatggagtttagcctaaatggagcacaccc 29474707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 16125592 - 16125519
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactcgtc 169  Q
    ||||||||||||||||||||||| |||||  ||||||||||| ||||||||||| |||||||||||||||||||    
T  16125592 gccacatgtcttgcatccaaaccctaaatgaaataaatgaagtttagcctaaatggagcatacccgaactcgtc 16125519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 22748658 - 22748588
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||||||||||||||| ||||||| || |||||| ||| |||||||||| ||||||||||||||||    
T  22748658 gccacatgtcttgcatccaaatcttaaatggagtaaatggagcatagcctaaattgagcatacccgaactc 22748588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 11014554 - 11014615
Alignment:
Q  98 cacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacc 159  Q
    ||||| |||||||| ||||| |||||||||||||||| || ||||||||||| |||||||||    
T  11014554 cacatatcttgcattcaaacattaaatagaataaatggagtttagcctaaatggagcatacc 11014615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 16125755 - 16125823
Alignment:
Q  98 cacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||| |||||||||||| |  ||||| || |||||| ||||||| |||||||||||||| ||||||||    
T  16125755 cacatatcttgcatccaagctctaaattgagtaaatggagcttagtctaaatagagcatatccgaactc 16125823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 6705283 - 6705213
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||| |||| |||| ||| ||||||| ||||||||||| |||| ||||| | |||||||||| |||||    
T  6705283 gccacatatcttacatcaaaatcttaaatggaataaatgaaacttaacctaattggagcatacccaaactc 6705213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 22748820 - 22748889
Alignment:
Q  97 ccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||||| |||||||| | ||||| || |||||| | ||||| |||||| ||||||||| ||||||    
T  22748820 ccacatgtctttcatccaaatcctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 22748889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 33277352 - 33277315
Alignment:
Q  129 taaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  33277352 taaatgaagtttagcctaaatggagcatacccgaactc 33277315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 4041414 - 4041483
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaact 165  Q
    ||||||||||||||||||||||| ||||| || ||||||||||||||||||||| |||||||||||||||    
T  4041414 gccacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccgaact 4041483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 53197214 - 53197279
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccg 161  Q
    ||||||||||||||||||||||| ||||| || ||||||||||||||||||||| |||||||||||    
T  53197214 gccacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccg 53197279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 8799387 - 8799317
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||||||||||||||||| ||||| || |||||| ||| |||||||||| ||||||||||||||||    
T  8799387 gccacatgtcttgcatccaaaccctaaatggagtaaatggagcctagcctaaatggagcatacccgaactc 8799317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 38499889 - 38499819
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||||||| ||||||||| ||||| || |||||| |||||||||||||| ||||||||||||||||    
T  38499889 gccacatgtcttgtatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 38499819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 43797422 - 43797361
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcata 157  Q
    ||||||||||||||||||||||||||||| || |||||| |||||||||||||| |||||||    
T  43797422 gccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcata 43797361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 53197058 - 53196988
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||| ||||||||||||| |||||||| ||||||||| ||||| ||||| | ||||||||||||||    
T  53197058 gccacatgttttgcatccaaaccctaaatagagtaaatgaagtttagcttaaatggggcatacccgaactc 53196988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 38500053 - 38500122
Alignment:
Q  97 ccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||||| |||||||||| ||| | || |||||| |||||||||||||| ||||||||||||||||    
T  38500053 ccacatgtcttacatccaaaccctaattggagtaaatggagcttagcctaaatggagcatacccgaactc 38500122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 43797585 - 43797646
Alignment:
Q  98 cacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacc 159  Q
    |||||||||| |||||||||| |||||||| |||||| | |||||||||||| |||||||||    
T  43797585 cacatgtctttcatccaaaccctaaatagagtaaatggatcttagcctaaatggagcatacc 43797646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 25349943 - 25350005
Alignment:
Q  98 cacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcataccc 160  Q
    |||||||||| |||||||||| ||||||||||||||| ||||||   ||||| ||||||||||    
T  25349943 cacatgtcttacatccaaaccctaaatagaataaatggagcttaatttaaatggagcataccc 25350005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 29828912 - 29828973
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcata 157  Q
    ||||||| |||| |||||||| | ||||| ||||||||| |||||||| |||||||||||||    
T  29828912 gccacatatcttacatccaaatcctaaatggaataaatggagcttagcttaaatagagcata 29828973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 15009089 - 15009159
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    |||||||||||| |||||||||| ||||| || ||||||||||||||||||||| ||||||||||||||||    
T  15009089 gccacatgtcttacatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccgaactc 15009159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 8489443 - 8489373
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    |||||||||||| |||||||||| ||||| |||||||||||||||| ||||||| |||||||||| |||||    
T  8489443 gccacatgtcttacatccaaaccctaaatggaataaatgaagcttaacctaaatggagcatacccaaactc 8489373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 6911099 - 6911029
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    |||||||||||| |||||||||| ||||| || |||||| |||||||||||||| ||||||||| ||||||    
T  6911099 gccacatgtcttacatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacctgaactc 6911029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 14999241 - 14999171
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||||||||||||||||| ||||| || |||||  |||||||||||||| ||||||| ||||||||    
T  14999241 gccacatgtcttgcatccaaaccctaaatggagtaaattgagcttagcctaaatggagcatatccgaactc 14999171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 16324912 - 16324844
Alignment:
Q  98 cacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||||||||||||||| ||||| || |||||  |||||||||||||| |||||| |||||||||    
T  16324912 cacatgtcttgcatccaaaccctaaatggattaaattgagcttagcctaaatggagcatgcccgaactc 16324844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 43801540 - 43801470
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    |||||||||||| |||||||||  ||||| || ||||||||| |||||||||||  |||||||||||||||    
T  43801540 gccacatgtcttacatccaaactctaaatggagtaaatgaagtttagcctaaatgaagcatacccgaactc 43801470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 43801702 - 43801772
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||| ||||||||||||||  ||||| || |||||| |||||||||||||| || |||||||||||||    
T  43801702 gccacatatcttgcatccaaactctaaatggagtaaatggagcttagcctaaatggaacatacccgaactc 43801772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 41403993 - 41404061
Alignment:
Q  98 cacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||||||||||||||| |||||||| |||||  | |||| ||||||| |||||||||| |||||    
T  41403993 cacatgtcttgcatccaaaccctaaatagagtaaattgaacttaacctaaatggagcatacccaaactc 41404061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 22781125 - 22781071
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaata 150  Q
    |||||||| |||||||||||||| | ||| || ||||||||| ||||||||||||    
T  22781125 gccacatgccttgcatccaaaccctgaatggagtaaatgaagtttagcctaaata 22781071  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 16325080 - 16325148
Alignment:
Q  99 acatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactcg 167  Q
    |||||||||||||||||||| ||||| || |||||| || || || |||||  ||||||| ||||||||    
T  16325080 acatgtcttgcatccaaaccctaaatggagtaaatggagtttggcttaaatgaagcatactcgaactcg 16325148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 4371524 - 4371454
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||||||||||||||||| ||||| || |||||| |||||||||||||| ||||||||||||||||    
T  4371524 gccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 4371454  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 21265793 - 21265863
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||||| |||||||||||||| |||||||    
T  21265793 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcttaaatagagcatactcgaactc 21265863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 22563280 - 22563210
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||||||||||||||||| ||||| || |||||| |||||||||||||| ||||||||||||||||    
T  22563280 gccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 22563210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 29893030 - 29893098
Alignment:
Q  98 cacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||||||||||||||||| |||||||| |||||  |||||||||||||| ||||||||||||||||    
T  29893030 cacatgtcttgcatccaaaccctaaatagagtaaatagagcttagcctaaatggagcatacccgaactc 29893098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 22563441 - 22563512
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactcg 167  Q
    ||||||||||||||||||||| | ||||| || |||||| || ||||||||||| |||||||||||||||||    
T  22563441 gccacatgtcttgcatccaaatcctaaatggagtaaatggagtttagcctaaatggagcatacccgaactcg 22563512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 12232633 - 12232563
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    |||||||||||| |||||||||| |||||||| |||||| |||||||||||||| ||||||| || |||||    
T  12232633 gccacatgtcttacatccaaaccctaaatagagtaaatggagcttagcctaaatggagcatatccaaactc 12232563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 20296647 - 20296717
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    |||||||||||| |||||||  ||||||| || |||||| ||||||||||||||||||||||||| |||||    
T  20296647 gccacatgtcttacatccaattcttaaatggagtaaatggagcttagcctaaatagagcatacccaaactc 20296717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 21265633 - 21265561
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactcgt 168  Q
    ||||||||||||||||||||||| ||||| || |||||  ||||||| |||||| |||||||||| |||||||    
T  21265633 gccacatgtcttgcatccaaaccctaaatggagtaaattgagcttagtctaaatggagcataccctaactcgt 21265561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 34645617 - 34645546
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactcg 167  Q
    ||||||||||||||||||| ||| ||||| || |||||  | |||| |||||||||||||||||||||||||    
T  34645617 gccacatgtcttgcatccataccctaaatggagtaaatagaacttaacctaaatagagcatacccgaactcg 34645546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 17200148 - 17200078
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    |||||||||||| |||||||| | ||||| || |||||| ||||| |||||||| ||||||||||||||||    
T  17200148 gccacatgtcttacatccaaatcctaaatggagtaaatggagctttgcctaaatggagcatacccgaactc 17200078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 34645777 - 34645847
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    |||||||||||| |||||||||| ||||| ||||||||| || | ||||||||| ||  ||||||||||||    
T  34645777 gccacatgtcttacatccaaaccctaaatggaataaatggagttaagcctaaatggaatatacccgaactc 34645847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 17200309 - 17200356
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagc 143  Q
    |||||||||||| |||||||||||||||| || |||||| ||||||||    
T  17200309 gccacatgtcttacatccaaaccttaaatggagtaaatggagcttagc 17200356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 4682825 - 4682757
Alignment:
Q  97 ccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaact 165  Q
    |||||||||||||||| ||||  ||||| || |||||||||||||   ||||| || ||||||||||||    
T  4682825 ccacatgtcttgcatctaaactctaaatggagtaaatgaagcttaaattaaatggaacatacccgaact 4682757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 27171869 - 27171800
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaact 165  Q
    |||||||||||| |||||||||| ||||| || |||||||||||||||||||||  ||||||||||||||    
T  27171869 gccacatgtcttacatccaaaccataaatggagtaaatgaagcttagcctaaatgaagcatacccgaact 27171800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 49777056 - 49777117
Alignment:
Q  98 cacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacc 159  Q
    ||||||||||||||||||||| ||||||||||||||| || ||||||||||| |||||||||    
T  49777056 cacatgtcttgcatccaaaccctaaatagaataaatggagtttagcctaaatggagcatacc 49777117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 24883041 - 24882970
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactcg 167  Q
    ||||| ||||||||||||||||| ||||| || |||||| || ||||||||||| |||||||||||||||||    
T  24883041 gccacgtgtcttgcatccaaaccctaaatggagtaaatggagattagcctaaatggagcatacccgaactcg 24882970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 49776888 - 49776817
Alignment:
Q  97 ccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactcgt 168  Q
    |||||||||||||||||||| | ||||| || ||||| ||||||||| ||||| ||||||||||||||||||    
T  49776888 ccacatgtcttgcatccaaatcctaaatggagtaaataaagcttagcttaaatggagcatacccgaactcgt 49776817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 24883199 - 24883269
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    ||||||| ||||||||||||||| ||||| || |||||| |||||||||||||| || |||||||||||||    
T  24883199 gccacatatcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggaacatacccgaactc 24883269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 34622556 - 34622626
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    |||||||||||||||| |||||||||||| || ||| || ||||||| |||||| ||||||||||||||||    
T  34622556 gccacatgtcttgcattcaaaccttaaatggagtaactggagcttagtctaaatggagcatacccgaactc 34622626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 3385378 - 3385308
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    |||||||||||| |||||||||| ||||| |  |||| ||||||||||||||||  |||||||||||||||    
T  3385378 gccacatgtcttacatccaaaccctaaatggggtaaacgaagcttagcctaaatgaagcatacccgaactc 3385308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 33156685 - 33156747
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatac 158  Q
    ||||||||||||| ||||||||| ||||| || ||||| ||||||||||||||| ||||||||    
T  33156685 gccacatgtcttgtatccaaaccctaaatggagtaaataaagcttagcctaaatggagcatac 33156747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 3385543 - 3385612
Alignment:
Q  97 ccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaactc 166  Q
    |||||| |||| |||||||||| ||||| || |||||| ||||| |||||||| ||||||||||||||||    
T  3385543 ccacatatcttacatccaaaccctaaatggagtaaatggagcttggcctaaatggagcatacccgaactc 3385612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 33400925 - 33400857
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaac 164  Q
    |||||||| ||| |||||||||||||||| || |||||| |||||||| ||||| |||||| |||||||    
T  33400925 gccacatgccttacatccaaaccttaaatggagtaaatggagcttagcttaaatggagcatgcccgaac 33400857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 37948855 - 37948797
Alignment:
Q  99 acatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcata 157  Q
    ||||||||| |||||||||||||||| || ||||||||||||| | ||||| |||||||    
T  37948855 acatgtcttacatccaaaccttaaattgagtaaatgaagcttaacttaaatggagcata 37948797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 33401087 - 33401156
Alignment:
Q  96 gccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaact 165  Q
    |||||||||||| |||| |||||||||||| | |||||  ||||||||||||||  |||||| |||||||    
T  33401087 gccacatgtcttacatctaaaccttaaataaagtaaattgagcttagcctaaatgtagcatatccgaact 33401156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 34970054 - 34969987
Alignment:
Q  97 ccacatgtcttgcatccaaaccttaaatagaataaatgaagcttagcctaaatagagcatacccgaac 164  Q
    |||||||||||||||||||| | ||||| || |||||| || ||| |||||||  |||||||||||||    
T  34970054 ccacatgtcttgcatccaaatcctaaattgagtaaatggagtttaacctaaatgaagcatacccgaac 34969987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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