View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5897_low_3 (Length: 593)

Name: NF5897_low_3
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5897_low_3
NF5897_low_3
[»] chr4 (8 HSPs)
chr4 (251-578)||(4750401-4750728)
chr4 (95-222)||(4750274-4750401)
chr4 (245-423)||(4743634-4743820)
chr4 (241-396)||(3675998-3676161)
chr4 (95-185)||(4742204-4742294)
chr4 (28-83)||(4747345-4747400)
chr4 (421-532)||(4743868-4743979)
chr4 (463-531)||(34948687-34948755)
[»] chr3 (2 HSPs)
chr3 (470-578)||(33283056-33283164)
chr3 (470-578)||(33691799-33691907)


Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-175; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 251 - 578
Target Start/End: Original strand, 4750401 - 4750728
Alignment:
Q  251 gaaggaagtcaaagagaaaaatagagtaacacctctcaattccaaagtggctctcttgagggagtcttctttcttgtaggatcccgtagctagtgccact 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4750401 gaaggaagtcaaagagaaaaatagagtaacacctctcaattccaaagaggctctcttgagggagtcttctttcttgtaggatcccgtagctagtgccact 4750500  T
Q  351 agttgtcagctccaaattcatgtctatatttacctgagaattattacaagaattcaagatctctatttggtaatgaattgactgtaagaatgtagttcct 450  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4750501 agttatcagctccaaattcatgtctatatttacctgagaattattacaagaattcaacatctctatttggtaatgaattgactgtaagaatgtagttcct 4750600  T
Q  451 agatttccattcatatgttttgtgaataatatacaattattgtcaatcctattttagaaattaaataattactagtgaatataattcctagttaatgaat 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4750601 agatttccattcatatgttttgtgaataatatacaattattgtcaatcctattttagaaattaaataattactagtgaatataattcctagttaatgaat 4750700  T
Q  551 ttataatgaatatttacaagtcaaacat 578  Q
    ||||||||||||||| ||||||||||||    
T  4750701 ttataatgaatattttcaagtcaaacat 4750728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 95 - 222
Target Start/End: Original strand, 4750274 - 4750401
Alignment:
Q  95 aaagagaagctataattattatcatctaaaaaatgctaacattgtagccataagtgccgttagaatgttttatttctcaaaattgtgtttaattaccaca 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  4750274 aaagagaagctataattattatcatctaaaaaatgctaacattgtagccataagtgccgtaacaatgttttatttctcaaaattgtgtttaattaccaca 4750373  T
Q  195 atacttatacctgtactcttgatagtgg 222  Q
    |||||| |||||||||||||||||||||    
T  4750374 atacttttacctgtactcttgatagtgg 4750401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 245 - 423
Target Start/End: Original strand, 4743634 - 4743820
Alignment:
Q  245 gaggaagaaggaagtcaaagagaaaaatagagtaa-cacctctcaattccaaagtggctctcttgagggagtcttctttctt--------gtaggatccc 335  Q
    ||||| ||| |||||||| |||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||  ||||        ||||||||||    
T  4743634 gaggaggaaagaagtcaa-gagaaaaatagagtaaacacctctcaatcccaaagaggctctcttgagggagtcttccctcttccaccgttgtaggatccc 4743732  T
Q  336 gtagctagtgccactagttgtcagctccaaattcatgtctatatttacctgagaattattacaagaattcaagatctctatttggtaa 423  Q
     ||||||||||||||| |||   ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  4743733 atagctagtgccactatttgctggctccaaattcatgtctatatttacttgagaattattacaagaattcaacatctctatttggtaa 4743820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 241 - 396
Target Start/End: Original strand, 3675998 - 3676161
Alignment:
Q  241 ccatgaggaagaaggaagtcaaagagaaaaatagagtaacacctctcaattccaaagtggctctcttgagggagtcttctttc--------ttgtaggat 332  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||  ||        |||||||||    
T  3675998 ccatgaggaggaaggaagtcaaagagaaaaatagagtaacacctctcaatcccaaagaggctctcttgagggagtcctccctcttccacctttgtaggat 3676097  T
Q  333 cccgtagctagtgccactagttgtcagctccaaattcatgtctatatttacctgagaattatta 396  Q
     ||||||||||||||||||| || |  ||||  ||||||||| ||||||||||  |||||||||    
T  3676098 gccgtagctagtgccactagatgccgactccggattcatgtcaatatttacctctgaattatta 3676161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 95 - 185
Target Start/End: Original strand, 4742204 - 4742294
Alignment:
Q  95 aaagagaagctataattattatcatctaaaaaatgctaacattgtagccataagtgccgttagaatgttttatttctcaaaattgtgttta 185  Q
    |||||||||| | |||||||||||| |||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||    
T  4742204 aaagagaagcaaaaattattatcatataaaaaatgctaacattgtagccataagtgccataacaatgttttatttctcaaaattgtgttta 4742294  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 4747345 - 4747400
Alignment:
Q  28 tcgtcgattttgcttaaaccacatacacccttaactagaggagtcatcatgaatgt 83  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4747345 tcgtcgattttgcttaaaccacatacacccttaactggaggagtcatcatgaatgt 4747400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 421 - 532
Target Start/End: Original strand, 4743868 - 4743979
Alignment:
Q  421 taatgaattgactgtaagaatgtagttcctagatttccattcatatgttttgtgaataatatacaattattgtcaatcctattttagaaattaaataatt 520  Q
    ||||||||||| || || |||||| |||   ||||||| || ||||| |||||||||||||||||| ||||||||||||||||||  |||| ||||||||    
T  4743868 taatgaattgattgcaaaaatgtaattcaatgatttcctttgatatgatttgtgaataatatacaactattgtcaatcctattttgaaaatgaaataatt 4743967  T
Q  521 actagtgaatat 532  Q
     ||| |||||||    
T  4743968 gctaatgaatat 4743979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 531
Target Start/End: Complemental strand, 34948755 - 34948687
Alignment:
Q  463 atatgttttgtgaataatatacaattattgtcaatcctattttagaaattaaataattactagtgaata 531  Q
    ||||| |||||||||| ||||||| |||||||||||||||||| |||| |||||| || ||| ||||||    
T  34948755 atatgatttgtgaatattatacaactattgtcaatcctattttggaaactaaatagttgctaatgaata 34948687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 470 - 578
Target Start/End: Complemental strand, 33283164 - 33283056
Alignment:
Q  470 ttgtgaataatatacaattattgtcaatcctattttagaaattaaataattactagtgaatataattcctagttaatgaatttataatgaatatttacaa 569  Q
    ||||||||||||||||| ||||||  || ||||| |||||| ||| | ||| ||| |||||||||||| |   |||| ||||  ||||||||||||||||    
T  33283164 ttgtgaataatatacaactattgttgattctattctagaaactaattgattgctaatgaatataattcatgactaatcaattgctaatgaatatttacaa 33283065  T
Q  570 gtcaaacat 578  Q
    |||||||||    
T  33283064 gtcaaacat 33283056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 578
Target Start/End: Original strand, 33691799 - 33691907
Alignment:
Q  470 ttgtgaataatatacaattattgtcaatcctattttagaaattaaataattactagtgaatataattcctagttaatgaatttataatgaatatttacaa 569  Q
    ||||||||||||||||| ||||||  || ||||| || ||| ||| | ||| ||| | |||||||||| |   |||| ||||  ||||||||||||||||    
T  33691799 ttgtgaataatatacaactattgttgattctattctaaaaactaattgattgctaatcaatataattcatgactaatcaattgctaatgaatatttacaa 33691898  T
Q  570 gtcaaacat 578  Q
    |||||||||    
T  33691899 gtcaaacat 33691907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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