View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5897_low_38 (Length: 220)

Name: NF5897_low_38
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5897_low_38
NF5897_low_38
[»] chr1 (6 HSPs)
chr1 (160-210)||(16116913-16116963)
chr1 (164-200)||(180747-180783)
chr1 (164-208)||(23174510-23174554)
chr1 (164-200)||(23921053-23921089)
chr1 (165-200)||(8401523-8401558)
chr1 (164-200)||(34370430-34370466)
[»] scaffold0338 (1 HSPs)
scaffold0338 (164-208)||(6416-6460)
[»] chr7 (8 HSPs)
chr7 (160-208)||(44140194-44140242)
chr7 (165-208)||(15973968-15974011)
chr7 (164-208)||(48306245-48306289)
chr7 (164-208)||(48691942-48691986)
chr7 (164-207)||(46572683-46572726)
chr7 (13-41)||(12286058-12286086)
chr7 (13-41)||(39007082-39007110)
chr7 (13-41)||(44140364-44140392)
[»] chr5 (3 HSPs)
chr5 (160-208)||(16667798-16667846)
chr5 (164-208)||(34330083-34330127)
chr5 (13-41)||(16667952-16667980)
[»] chr8 (7 HSPs)
chr8 (160-208)||(1672626-1672674)
chr8 (164-208)||(2751137-2751181)
chr8 (164-207)||(8551227-8551270)
chr8 (164-200)||(4835633-4835669)
chr8 (164-200)||(4841078-4841114)
chr8 (164-208)||(39657806-39657850)
chr8 (13-41)||(1672476-1672504)
[»] chr3 (11 HSPs)
chr3 (164-208)||(19384489-19384533)
chr3 (164-208)||(51361621-51361665)
chr3 (164-200)||(52986597-52986633)
chr3 (168-210)||(7044462-7044504)
chr3 (164-208)||(31853083-31853127)
chr3 (164-206)||(50755084-50755126)
chr3 (13-41)||(1366023-1366051)
chr3 (13-41)||(9642673-9642701)
chr3 (13-41)||(17621357-17621385)
chr3 (13-41)||(17628540-17628568)
chr3 (13-41)||(28299374-28299402)
[»] chr2 (11 HSPs)
chr2 (160-208)||(4280823-4280871)
chr2 (160-200)||(4962615-4962655)
chr2 (160-208)||(25995944-25995992)
chr2 (165-208)||(14550539-14550582)
chr2 (164-205)||(4578670-4578711)
chr2 (164-205)||(25193883-25193924)
chr2 (163-208)||(36635885-36635930)
chr2 (164-208)||(2264546-2264590)
chr2 (164-208)||(18297271-18297315)
chr2 (12-41)||(43823588-43823617)
chr2 (160-208)||(43823739-43823787)
[»] chr6 (7 HSPs)
chr6 (162-208)||(18612220-18612266)
chr6 (164-200)||(878293-878329)
chr6 (168-208)||(33345438-33345478)
chr6 (165-208)||(29163591-29163634)
chr6 (171-208)||(24736669-24736706)
chr6 (13-41)||(18612068-18612096)
chr6 (13-41)||(18756268-18756296)
[»] chr4 (15 HSPs)
chr4 (164-206)||(26577366-26577408)
chr4 (164-208)||(10473540-10473584)
chr4 (168-208)||(48077052-48077092)
chr4 (164-200)||(38245815-38245851)
chr4 (164-208)||(45256792-45256836)
chr4 (171-208)||(51836431-51836468)
chr4 (13-41)||(6385638-6385666)
chr4 (163-191)||(9551742-9551770)
chr4 (13-41)||(14504175-14504203)
chr4 (13-41)||(24687194-24687222)
chr4 (13-41)||(25573503-25573531)
chr4 (13-41)||(48077218-48077246)
chr4 (164-196)||(50644596-50644628)
chr4 (13-41)||(55781914-55781942)
chr4 (13-41)||(55846094-55846122)
[»] scaffold0238 (1 HSPs)
scaffold0238 (164-208)||(24425-24469)


Alignment Details
Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 16116913 - 16116963
Alignment:
Q  160 tccggtggtgatgatgatgaacgacggtgatgattcagtttctttccgcct 210  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16116913 tccggtggtgatgatgatgaacgacggtgatgattcagtttgtttccgcct 16116963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 180747 - 180783
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagttt 200  Q
    |||||||||||||||||||||||||||||||||||||    
T  180747 gtggtgatgatgatgaacgacggtgatgattcagttt 180783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 23174554 - 23174510
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    |||||||||||||||||||| |||||||||||||||| |||||||    
T  23174554 gtggtgatgatgatgaacgatggtgatgattcagtttgtttccgc 23174510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 23921089 - 23921053
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagttt 200  Q
    |||||||||||||||||||||||||||||||||||||    
T  23921089 gtggtgatgatgatgaacgacggtgatgattcagttt 23921053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 200
Target Start/End: Complemental strand, 8401558 - 8401523
Alignment:
Q  165 tggtgatgatgatgaacgacggtgatgattcagttt 200  Q
    ||||||||||||||||||||||||||||||||||||    
T  8401558 tggtgatgatgatgaacgacggtgatgattcagttt 8401523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 34370430 - 34370466
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagttt 200  Q
    |||||||||||||||||||||||| ||||||||||||    
T  34370430 gtggtgatgatgatgaacgacggtcatgattcagttt 34370466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 6416 - 6460
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  6416 gtggtgatgatgatgaacgacggtgatgattcagtttctttccgc 6460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 44140242 - 44140194
Alignment:
Q  160 tccggtggtgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44140242 tccggtggtgatgatgatgaacgacggtgatgattcagtttgtttccgc 44140194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 15974011 - 15973968
Alignment:
Q  165 tggtgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  15974011 tggtgatgatgatgaacgacggtgatgattcagtttgtttccgc 15973968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 48306245 - 48306289
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    |||||||||||||||||||||||||||||||||| || |||||||    
T  48306245 gtggtgatgatgatgaacgacggtgatgattcagcttgtttccgc 48306289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 48691942 - 48691986
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    |||||||||||||||||||| |||||||||||||||| |||||||    
T  48691942 gtggtgatgatgatgaacgaaggtgatgattcagtttgtttccgc 48691986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 46572726 - 46572683
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagtttctttccg 207  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||    
T  46572726 gtggtgatgatgatgaaggacggtgatgattcagtttgtttccg 46572683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 12286058 - 12286086
Alignment:
Q  13 aaaccatttccaactaacatatacaattt 41  Q
    |||||||||||||||||||||||||||||    
T  12286058 aaaccatttccaactaacatatacaattt 12286086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 39007110 - 39007082
Alignment:
Q  13 aaaccatttccaactaacatatacaattt 41  Q
    |||||||||||||||||||||||||||||    
T  39007110 aaaccatttccaactaacatatacaattt 39007082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 44140392 - 44140364
Alignment:
Q  13 aaaccatttccaactaacatatacaattt 41  Q
    |||||||||||||||||||||||||||||    
T  44140392 aaaccatttccaactaacatatacaattt 44140364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 16667846 - 16667798
Alignment:
Q  160 tccggtggtgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16667846 tccggtggtgatgatgatgaacgacggtgatgattcagtttgtttccgc 16667798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 34330083 - 34330127
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  34330083 gtggtgatgatgatgaacgacggtgatgattcagtttgtttccgc 34330127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 16667980 - 16667952
Alignment:
Q  13 aaaccatttccaactaacatatacaattt 41  Q
    |||||||||||||||||||||||||||||    
T  16667980 aaaccatttccaactaacatatacaattt 16667952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 1672626 - 1672674
Alignment:
Q  160 tccggtggtgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  1672626 tccggtgttgatgatgatgaacgacggtgatgattcagtttgtttccgc 1672674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 2751137 - 2751181
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  2751137 gtggtgatgatgatgaacgacggtgatgattcagtttgtttccgc 2751181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 8551227 - 8551270
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagtttctttccg 207  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  8551227 gtggtgatgatgatgaacgacggtgatgattcagtttgtttccg 8551270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 4835669 - 4835633
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagttt 200  Q
    |||||||||||||||||||||||||||||||||||||    
T  4835669 gtggtgatgatgatgaacgacggtgatgattcagttt 4835633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 4841114 - 4841078
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagttt 200  Q
    |||||||||||||||||||||||||||||||||||||    
T  4841114 gtggtgatgatgatgaacgacggtgatgattcagttt 4841078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 39657850 - 39657806
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    |||||||||||||||||||||| |||||||||||||| |||||||    
T  39657850 gtggtgatgatgatgaacgacgttgatgattcagtttgtttccgc 39657806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 1672476 - 1672504
Alignment:
Q  13 aaaccatttccaactaacatatacaattt 41  Q
    |||||||||||||||||||||||||||||    
T  1672476 aaaccatttccaactaacatatacaattt 1672504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 19384533 - 19384489
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  19384533 gtggtgatgatgatgaacgacggtgatgattcagtttgtttccgc 19384489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 51361665 - 51361621
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    |||||| |||||||||||||||||||||||||||||| |||||||    
T  51361665 gtggtgttgatgatgaacgacggtgatgattcagtttgtttccgc 51361621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 52986633 - 52986597
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagttt 200  Q
    |||||||||||||||||||||||||||||||||||||    
T  52986633 gtggtgatgatgatgaacgacggtgatgattcagttt 52986597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 7044504 - 7044462
Alignment:
Q  168 tgatgatgatgaacgacggtgatgattcagtttctttccgcct 210  Q
    |||||||||| |||||||||||||||||||||| |||||||||    
T  7044504 tgatgatgataaacgacggtgatgattcagtttgtttccgcct 7044462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 31853083 - 31853127
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    ||||||||||||||||||||||||||| ||| ||||| |||||||    
T  31853083 gtggtgatgatgatgaacgacggtgataatttagtttgtttccgc 31853127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 50755084 - 50755126
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagtttctttcc 206  Q
    |||||||| ||||||||||||||||||||| |||||| |||||    
T  50755084 gtggtgataatgatgaacgacggtgatgatccagtttgtttcc 50755126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 1366051 - 1366023
Alignment:
Q  13 aaaccatttccaactaacatatacaattt 41  Q
    |||||||||||||||||||||||||||||    
T  1366051 aaaccatttccaactaacatatacaattt 1366023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 9642701 - 9642673
Alignment:
Q  13 aaaccatttccaactaacatatacaattt 41  Q
    |||||||||||||||||||||||||||||    
T  9642701 aaaccatttccaactaacatatacaattt 9642673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 17621385 - 17621357
Alignment:
Q  13 aaaccatttccaactaacatatacaattt 41  Q
    |||||||||||||||||||||||||||||    
T  17621385 aaaccatttccaactaacatatacaattt 17621357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 17628568 - 17628540
Alignment:
Q  13 aaaccatttccaactaacatatacaattt 41  Q
    |||||||||||||||||||||||||||||    
T  17628568 aaaccatttccaactaacatatacaattt 17628540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 28299402 - 28299374
Alignment:
Q  13 aaaccatttccaactaacatatacaattt 41  Q
    |||||||||||||||||||||||||||||    
T  28299402 aaaccatttccaactaacatatacaattt 28299374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 4280871 - 4280823
Alignment:
Q  160 tccggtggtgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||    
T  4280871 tccggtggtgatgatgatgaacgatggtgatgattcagtttgtttccgc 4280823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 4962655 - 4962615
Alignment:
Q  160 tccggtggtgatgatgatgaacgacggtgatgattcagttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4962655 tccggtggtgatgatgatgaacgacggtgatgattcagttt 4962615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 25995944 - 25995992
Alignment:
Q  160 tccggtggtgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||    
T  25995944 tccggtggtgatgatgatgaccgacggtgatgattcagtttgtttccgc 25995992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 14550582 - 14550539
Alignment:
Q  165 tggtgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  14550582 tggtgatgatgatgaacgacggtgatgattcagtttgtttccgc 14550539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 4578711 - 4578670
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagtttctttc 205  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  4578711 gtggtgatgatgatgaacgacggtgatgattcagtttgtttc 4578670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 25193883 - 25193924
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagtttctttc 205  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  25193883 gtggtgatgatgatgaacgacggtgatgattcagtttgtttc 25193924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 36635930 - 36635885
Alignment:
Q  163 ggtggtgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||    
T  36635930 ggtggtgatgatgatgaccgacggtgatgattcagtttgtttccgc 36635885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 2264546 - 2264590
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    |||||||||||||||||| ||| |||||||||||||| |||||||    
T  2264546 gtggtgatgatgatgaacaacgatgatgattcagtttgtttccgc 2264590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 18297315 - 18297271
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    |||||||||||||||||||||  |||||||||||||| |||||||    
T  18297315 gtggtgatgatgatgaacgacaatgatgattcagtttgtttccgc 18297271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 43823588 - 43823617
Alignment:
Q  12 caaaccatttccaactaacatatacaattt 41  Q
    ||||||||||||||||||||||||||||||    
T  43823588 caaaccatttccaactaacatatacaattt 43823617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 43823739 - 43823787
Alignment:
Q  160 tccggtggtgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    |||| ||||||||||||||||||||  |||||||||| ||| |||||||    
T  43823739 tccgatggtgatgatgatgaacgacaatgatgattcaatttgtttccgc 43823787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 18612220 - 18612266
Alignment:
Q  162 cggtggtgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||    
T  18612220 cggtggtgatgatgatgaacgacggtgatgatttagtttgtttccgc 18612266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 878293 - 878329
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagttt 200  Q
    |||||||||||||||||||||||||||||||||||||    
T  878293 gtggtgatgatgatgaacgacggtgatgattcagttt 878329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 33345478 - 33345438
Alignment:
Q  168 tgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  33345478 tgatgatgatgaacgacggtgatgattcagtttgtttccgc 33345438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 29163591 - 29163634
Alignment:
Q  165 tggtgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    |||||||||||||||||||| ||||||||||||||| |||||||    
T  29163591 tggtgatgatgatgaacgacagtgatgattcagtttgtttccgc 29163634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 24736706 - 24736669
Alignment:
Q  171 tgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    |||||||||||||||||||||||||||||| |||||||    
T  24736706 tgatgatgaacgacggtgatgattcagtttgtttccgc 24736669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 18612068 - 18612096
Alignment:
Q  13 aaaccatttccaactaacatatacaattt 41  Q
    |||||||||||||||||||||||||||||    
T  18612068 aaaccatttccaactaacatatacaattt 18612096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 18756296 - 18756268
Alignment:
Q  13 aaaccatttccaactaacatatacaattt 41  Q
    |||||||||||||||||||||||||||||    
T  18756296 aaaccatttccaactaacatatacaattt 18756268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 26577408 - 26577366
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagtttctttcc 206  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  26577408 gtggtgatgatgatgaacgacggtgatgattcagtttgtttcc 26577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 10473540 - 10473584
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||    
T  10473540 gtggtgatgatgatgaacgacggtgatgattcaatttgtttccgc 10473584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 48077092 - 48077052
Alignment:
Q  168 tgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  48077092 tgatgatgatgaacgacggtgatgattcagtttgtttccgc 48077052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 38245815 - 38245851
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagttt 200  Q
    ||||||||||||||||||||||||||| |||||||||    
T  38245815 gtggtgatgatgatgaacgacggtgataattcagttt 38245851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 45256792 - 45256836
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    |||||| ||||||||||| |||||||||||||||||| |||||||    
T  45256792 gtggtggtgatgatgaacaacggtgatgattcagtttgtttccgc 45256836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 51836468 - 51836431
Alignment:
Q  171 tgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  51836468 tgatgatgaacgacggtaatgattcagtttgtttccgc 51836431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 6385666 - 6385638
Alignment:
Q  13 aaaccatttccaactaacatatacaattt 41  Q
    |||||||||||||||||||||||||||||    
T  6385666 aaaccatttccaactaacatatacaattt 6385638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 191
Target Start/End: Complemental strand, 9551770 - 9551742
Alignment:
Q  163 ggtggtgatgatgatgaacgacggtgatg 191  Q
    |||||||||||||||||||||||||||||    
T  9551770 ggtggtgatgatgatgaacgacggtgatg 9551742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 14504203 - 14504175
Alignment:
Q  13 aaaccatttccaactaacatatacaattt 41  Q
    |||||||||||||||||||||||||||||    
T  14504203 aaaccatttccaactaacatatacaattt 14504175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 24687194 - 24687222
Alignment:
Q  13 aaaccatttccaactaacatatacaattt 41  Q
    |||||||||||||||||||||||||||||    
T  24687194 aaaccatttccaactaacatatacaattt 24687222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 25573531 - 25573503
Alignment:
Q  13 aaaccatttccaactaacatatacaattt 41  Q
    |||||||||||||||||||||||||||||    
T  25573531 aaaccatttccaactaacatatacaattt 25573503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 48077246 - 48077218
Alignment:
Q  13 aaaccatttccaactaacatatacaattt 41  Q
    |||||||||||||||||||||||||||||    
T  48077246 aaaccatttccaactaacatatacaattt 48077218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 50644596 - 50644628
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattca 196  Q
    ||||||||||||||||||||| |||||||||||    
T  50644596 gtggtgatgatgatgaacgactgtgatgattca 50644628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 55781914 - 55781942
Alignment:
Q  13 aaaccatttccaactaacatatacaattt 41  Q
    |||||||||||||||||||||||||||||    
T  55781914 aaaccatttccaactaacatatacaattt 55781942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 55846094 - 55846122
Alignment:
Q  13 aaaccatttccaactaacatatacaattt 41  Q
    |||||||||||||||||||||||||||||    
T  55846094 aaaccatttccaactaacatatacaattt 55846122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 24469 - 24425
Alignment:
Q  164 gtggtgatgatgatgaacgacggtgatgattcagtttctttccgc 208  Q
    |||||||||||||||||||| | |||||||||||||| |||||||    
T  24469 gtggtgatgatgatgaacgaagatgatgattcagtttgtttccgc 24425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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