View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5897_low_4 (Length: 558)
Name: NF5897_low_4
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5897_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 493; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Original strand, 28331400 - 28331943
Alignment:
| Q |
1 |
taataattcttacaacttttggtggcgaaggatttttgttgagtcaagcatttttgtagaaaatacttgtgtagcacaaattttccttagtttcttccac |
100 |
Q |
| |
|
||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28331400 |
taataattcttgcaacttttgttgacgaaggatttttgttgagtcaagcatttttgtagaaaatacttgtgtagcacaaattttccttagtttcttccac |
28331499 |
T |
|
| Q |
101 |
aaagctagtgttggaagtgtccctattgagaatttgtgatgatcaagtgcacaaattgcatccgagactactctattagagaatatttgggaattttctt |
200 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28331500 |
aaagctaatgttggaagtgttcctattgagaatttgtgatgatcaagtgcacaaattgcatccgagactactctattagagaatatttgggaattttctt |
28331599 |
T |
|
| Q |
201 |
gtaacacttgtttggctagttgtggtgatgagattactatggttgttaatgttcctagttttaatgtcatgattggtccataggtttttgagagttttgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28331600 |
gtaacacttgtttggctagttgtggtgatgagattactatggttgttaatgttcctagttttaatgtcatgattggtccataggtttttgagagttttgt |
28331699 |
T |
|
| Q |
301 |
aagtgccttgtgtggatttttgccaagttctaagatgtttccaattatgggaaatgggtttggccctggtggaagcttagtggaattttgggtttgttta |
400 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28331700 |
gagtgccttgtgtgggtttttgccaagttctaagatgtttccaattatgggaaatgggtttggccctggtggaagcttggtggaattttgggtttgttta |
28331799 |
T |
|
| Q |
401 |
acttttctaagaataaagatgagaatgcttgcacttgcaaaggtaaccactagtagaagtgtttggtggttcatggctattttgtttttgagggaggtgg |
500 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28331800 |
acttttctaataataaagatgagaatgcttgcacttgcaaaggtaaccactagtagaagtgtttggtggttcatggctattttgtttttgagggaggtag |
28331899 |
T |
|
| Q |
501 |
tttatatcttcatcgcttttcccctttccattggttatatatatt |
545 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
28331900 |
tttatatctt-atcgcttttgccctttccattggttatatatatt |
28331943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 28320921 - 28321395
Alignment:
| Q |
1 |
taataattcttacaacttttggtggcgaaggatttttgttgagtcaagcatttttgtagaaaatacttgtgtagcacaaattttccttagtttcttccac |
100 |
Q |
| |
|
||||||||||| ||||||||| ||||||||| || ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
28320921 |
taataattcttgcaacttttgttggcgaaggtttcttgttgagtcaagcatttttgtagaaaatacttttgtagcacaacttttccttagtttcttccac |
28321020 |
T |
|
| Q |
101 |
aaagctagtgttggaagtgtccctattgagaatttgtgatgatcaagtgcacaaattgcatccgagactactctattagagaatatttgggaattttctt |
200 |
Q |
| |
|
||| || |||||||| ||| | ||||||||||| |||||||| |||| | ||||||| | ||| |||||| || || ||||| ||||| || | |
|
|
| T |
28321021 |
aaatttaatgttggaacccacccaactgagaatttgtcatgatcaactgcagagattgcatgtgggacagttctatttgaaaagatttgagaattgtcat |
28321120 |
T |
|
| Q |
201 |
gtaacacttgtttggctagttgtggtgatgagattactatggttgttaatgttcctagttttaatgtcatgattggtccataggtttttgagagttttgt |
300 |
Q |
| |
|
|||| ||||||||||||| |||||| || ||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
28321121 |
gtaaaacttgtttggctacttgtggggaagagatcactatggttgttatgcttcctagttttaatgtcatgattggtccatagatttttgagagttttgt |
28321220 |
T |
|
| Q |
301 |
aagtgccttgtgtggatttttgccaagttctaagatgtttccaattatgggaaatgggtttggccctggtggaagcttagtggaattttgggtttgttta |
400 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| ||||| |||||||||||||| || |
|
|
| T |
28321221 |
taatgccttgtgtggatttttgccaagttctaagatgtttccaatgatgggaagtggctttggccctggtggaagtttagtagaattttgggtttggttt |
28321320 |
T |
|
| Q |
401 |
acttttctaagaataaagatgagaatgcttgcacttgcaaaggtaaccactagtagaagtgtttggtggttcatg |
475 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||| |||||| || |||||||||||||||||| |||| |||| |
|
|
| T |
28321321 |
gattttctaagaatgaagatgagaatggttgcacttacaaaggaaatcactagtagaagtgtttgatggtccatg |
28321395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 28310347 - 28310813
Alignment:
| Q |
1 |
taataattcttacaacttttggtggcgaaggatttttgttgagtcaagcatttttgtagaaaatacttgtgtagcacaaattttccttagtttcttccac |
100 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
28310347 |
taataattcttgcaacttttgttggcgaaggatttttgttgagtcaagtacttttgtagaaaatacttttgtagcacaaaatttccttagtttcttccat |
28310446 |
T |
|
| Q |
101 |
aaagctagtgttggaagtgtccctattgagaatttgtgatgatcaagtgcacaaattgcatccgagactactctattagagaatatttgggaattttctt |
200 |
Q |
| |
|
|||||| ||||||||| |||| ||||| ||||||| ||||||||||||||||| ||||| | ||| |||||||||||| ||||| |||||||| | |
|
|
| T |
28310447 |
gaagctaatgttggaagcatcccaattgataatttgtcatgatcaagtgcacaaagtgcatgtgggacagttctattagagaagatttgagaattttcat |
28310546 |
T |
|
| Q |
201 |
gtaacacttgtttggctagttgtggtgatgagattactatggttgttaatgttcctagttttaatgtcatgattggtccataggtttttgagagttttgt |
300 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | |||||||| ||||| |
|
|
| T |
28310547 |
gtaaaacttgtttggctagttgaggtgatgagattactatggttgttaatgttcctagttttagtgtcataattggtccatagatgtttgagagatttgt |
28310646 |
T |
|
| Q |
301 |
aagtgccttgtgtggatttttgccaagttctaagatgtttccaattatgggaaatgggtttggccctggtggaagcttagtggaattttgggtttgttta |
400 |
Q |
| |
|
|||| | ||||||||||||||||||||| |||||||||||| || ||||||| ||| ||||||||||||||||| || || |||||||| ||||| || |
|
|
| T |
28310647 |
gagtgtcctgtgtggatttttgccaagttgtaagatgtttcctatgatgggaagtggttttggccctggtggaagttttgtagaattttgagtttggttt |
28310746 |
T |
|
| Q |
401 |
acttttctaagaataaagatgagaatgcttgcacttgcaaaggtaaccactagtagaagtgtttggt |
467 |
Q |
| |
|
| |||| ||| ||| |||||||||||||| |||| | |||||| ||| |||||||||||||||| |
|
|
| T |
28310747 |
aattttttaaaaatgaagatgagaatgctcgcacacaaagaggtaatcaccagtagaagtgtttggt |
28310813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 2 - 467
Target Start/End: Original strand, 28296860 - 28297325
Alignment:
| Q |
2 |
aataattcttacaacttttggtggcgaaggatttttgttgagtcaagcatttttgtagaaaatacttgtgtagcacaaattttccttagtttcttccaca |
101 |
Q |
| |
|
|||||||||| ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| | ||| |||||| ||||||||||||||||||| | |
|
|
| T |
28296860 |
aataattcttgcaacttttgttggcgaaggttttttgttgagtcaagcatttttttagaaaatacatttgtggcacaacttttccttagtttcttccata |
28296959 |
T |
|
| Q |
102 |
aagctagtgttggaagtgtccctattgagaatttgtgatgatcaagtgcacaaattgcatccgagactactctattagagaatatttgggaattttcttg |
201 |
Q |
| |
|
|||||| ||||||||| ||| ||||||||||||| |||||||| ||||| || ||||| | || |||||||||||| |||||||||||||| || |
|
|
| T |
28296960 |
aagctaatgttggaagccacccaattgagaatttgtcatgatcaactgcactaagtgcatgtggaacagttctattagagaagatttgggaattttcatg |
28297059 |
T |
|
| Q |
202 |
taacacttgtttggctagttgtggtgatgagattactatggttgttaatgttcctagttttaatgtcatgattggtccataggtttttgagagttttgta |
301 |
Q |
| |
|
||| |||||||||||| |||||| ||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
28297060 |
taaggcttgtttggctacttgtggagatgaaattactatggttgttattgttcctagttttagtgtcatgattggtccatagttttgtgagagttttgtg |
28297159 |
T |
|
| Q |
302 |
agtgccttgtgtggatttttgccaagttctaagatgtttccaattatgggaaatgggtttggccctggtggaagcttagtggaattttgggtttgtttaa |
401 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||| || ||||||| ||||| ||||||||||||||| ||||| |||||||||||||| | | |
|
|
| T |
28297160 |
agtgccttatgtgggtttttgccaagttctaagatgtttcctatgatgggaagtgggtatggccctggtggaagtttagtagaattttgggtttggatta |
28297259 |
T |
|
| Q |
402 |
cttttctaagaataaagatgagaatgcttgcacttgcaaaggtaaccactagtagaagtgtttggt |
467 |
Q |
| |
|
|||||||||||| |||||||||||| ||| || | |||||| |||||||||||||||||||| |
|
|
| T |
28297260 |
attttctaagaatgaagatgagaatggttgtacacaaagaggtaatcactagtagaagtgtttggt |
28297325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 443
Target Start/End: Complemental strand, 28288341 - 28287912
Alignment:
| Q |
14 |
aacttttggtggcgaaggatttttgttgagtcaagcatttttgtagaaaatacttgtgtagcacaaattttccttagtttcttccacaaagctagtgttg |
113 |
Q |
| |
|
|||||||| ||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28288341 |
aacttttgttggcgaatgttttttgttgagtcaagcatttttgtagaaaatacttttgtagcacaaattttccttagtttcttccacaaagctaatgttg |
28288242 |
T |
|
| Q |
114 |
gaagtgtccctattgagaatttgtgatgatcaagtgcacaaattgcatccgagactactctattagagaatatttgggaattttcttgtaacacttgttt |
213 |
Q |
| |
|
|||| ||| | ||||||||||| ||||||||||||| ||||||| | ||| |||||| ||||| ||||| |||||||| ||||| |||||||| |
|
|
| T |
28288241 |
gaagccacccaagtgagaatttgttatgatcaagtgcatgtattgcatgtgggacagttctatttgagaagatttgagaattttcatgtaaaacttgttt |
28288142 |
T |
|
| Q |
214 |
ggctagttgtggtgatgagattactatggttgttaatgttcctagttttaatgtcatgattggtccataggtttttgagagttttgtaagtgccttgtgt |
313 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||| | |||||||| ||||| |||| | ||||| |
|
|
| T |
28288141 |
ggctaattgtggtgatgaaattactatggttgttaatgttcctagttttagtgtcataattggtccatagatgtttgagagatttgtgagtgtcctgtgt |
28288042 |
T |
|
| Q |
314 |
ggatttttgccaagttctaagatgtttccaattatgggaaatgggtttggccctggtggaagcttagtggaattttgggtttgtttaacttttctaagaa |
413 |
Q |
| |
|
|| ||||||||||||| |||||||||||| || ||||||| ||| ||||||||||||||||| || || |||||||| ||||| || | ||||||||||| |
|
|
| T |
28288041 |
gggtttttgccaagttgtaagatgtttcctatgatgggaagtggctttggccctggtggaagttttgtagaattttgagtttggtttaattttctaagaa |
28287942 |
T |
|
| Q |
414 |
taaagatgagaatgcttgcacttgcaaagg |
443 |
Q |
| |
|
| | |||||| |||||||||||| |||||| |
|
|
| T |
28287941 |
tgaggatgaggatgcttgcacttacaaagg |
28287912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 338
Target Start/End: Original strand, 28336389 - 28336523
Alignment:
| Q |
206 |
acttgtttggctagttgtggtgatgagattactatggttgttaatgtt-cctagttttaatgtcatgattggtccataggtttttgagag---ttttgta |
301 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||| |||| ||||| || ||||||| ||||||||||||||| ||| |||| ||||| |||||| |
|
|
| T |
28336389 |
acttgtttggttagttgtggggatgagattactatggatgtt-atgttgccaagttttagtgtcatgattggtccgtagattttagagagtttttttgtg |
28336487 |
T |
|
| Q |
302 |
agtgccttgtgtggatttttgccaagttctaagatgt |
338 |
Q |
| |
|
|||| ||||||||| ||||| | ||||||| |||||| |
|
|
| T |
28336488 |
agtgacttgtgtgggttttt-caaagttctgagatgt |
28336523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University