View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5897_low_40 (Length: 206)
Name: NF5897_low_40
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5897_low_40 |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 94; Significance: 4e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 33675718 - 33675605
Alignment:
| Q |
2 |
taactttctaacatggtgaacgactagggtttcaagaaataagggagttgaaaaacttagaattgttatattatctatatgttcaacattaaatcacagt |
101 |
Q |
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| T |
33675718 |
taactttctaacatggtgaacgacgagggtttcaagaaataagggagttgaaaaacttaaaattgttttattatctatatgttcaacattaaatcatagt |
33675619 |
T |
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| Q |
102 |
catcaagtaccagc |
115 |
Q |
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| T |
33675618 |
catcaagtagcagc |
33675605 |
T |
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Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 33675561 - 33675489
Alignment:
| Q |
116 |
tcaaaacaagacttgttacgagcaaattaaatgtcatgagaatgagtcccaagtattttgattatatctccac |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33675561 |
tcaaaacaagacttgttacgagcaaattaaatgtcatgagaatgagtcccaagtattttgattatatctccac |
33675489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 104628 - 104557
Alignment:
| Q |
116 |
tcaaaacaagacttgttacgagcaaattaaatgtcatgagaatgagtcccaagtattttgattatatctcca |
187 |
Q |
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| T |
104628 |
tcaaaacaaaacttgttacgagcagattaaatgtcacgagaatgagtctcgagtattttgattatgtctcca |
104557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 104753 - 104681
Alignment:
| Q |
35 |
aagaaataagggagttgaaaaacttagaatt--gttatattatctatatgttcaacattaaatcacagtcatc |
105 |
Q |
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| T |
104753 |
aagaaataagggagttgaaagacatagaagtatgttatattatctatatgttcaacattaaattatagtcatc |
104681 |
T |
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