View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5897_low_5 (Length: 544)

Name: NF5897_low_5
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5897_low_5
NF5897_low_5
[»] chr1 (8 HSPs)
chr1 (1-382)||(14756807-14757188)
chr1 (1-238)||(14880175-14880412)
chr1 (383-544)||(23314873-23315034)
chr1 (1-178)||(14769683-14769860)
chr1 (1-178)||(14789732-14789909)
chr1 (386-544)||(39208902-39209062)
chr1 (386-544)||(50445989-50446149)
chr1 (1-175)||(14874889-14875063)
[»] chr4 (2 HSPs)
chr4 (15-245)||(35368626-35368856)
chr4 (378-481)||(8972973-8973075)
[»] chr3 (8 HSPs)
chr3 (386-544)||(17712549-17712707)
chr3 (386-544)||(19013806-19013964)
chr3 (420-484)||(7237778-7237842)
chr3 (407-481)||(32391450-32391524)
chr3 (380-481)||(22513922-22514022)
chr3 (15-65)||(33003102-33003152)
chr3 (188-245)||(33003343-33003400)
chr3 (414-459)||(37508288-37508333)
[»] chr8 (1 HSPs)
chr8 (1-178)||(14857365-14857542)
[»] scaffold0042 (1 HSPs)
scaffold0042 (1-197)||(91845-92041)
[»] chr6 (1 HSPs)
chr6 (420-484)||(22501880-22501944)
[»] chr5 (2 HSPs)
chr5 (420-484)||(42838128-42838192)
chr5 (396-481)||(31698259-31698344)
[»] chr7 (3 HSPs)
chr7 (387-472)||(11604889-11604974)
chr7 (420-484)||(24768349-24768413)
chr7 (414-466)||(36962986-36963038)
[»] chr2 (1 HSPs)
chr2 (414-466)||(16767895-16767947)


Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 14757188 - 14756807
Alignment:
Q  1 atggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacaggatctttccctgccatatttggatcataattataaaattgtatccc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  14757188 atggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtctttccctgccatatttggatcatatttataaaattgtatccc 14757089  T
Q  101 aggaacttgccaacgtaatgaatcttggtcatcaatgtctgagagtagttttgtttcatgaggtgtgggttttgatggagttatcagttcaggttcatgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14757088 aggaacttgccaacgtaatgaatcttggtcatcaatgtctgagagtagttttgtttcatgaggtgtgggttttgatggagttatcagttcaggttcacgc 14756989  T
Q  201 ctcttcaccgtgaacactagagcatgggccataattataaactatagaggaaaataggtatagnnnnnnnngtctcttgttagttttggatgatatggtt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||| ||||||||||||||||||    
T  14756988 ctcttcaccgtgaacactagagcatgggccataattataaactatagaggaaaataggtatagttttttttgtctcttgtttgttttggatgatatggtt 14756889  T
Q  301 atatgcaaatactgaatgtagggatgctatgtatatataaggaaaatgtttagtatatgtgtacatatacgaaaaacaaaaa 382  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14756888 atatgcaaatactgaatgtggggatgctatgtatatataaggaaaatgtttagtatatgtgtacatatacgaaaaagaaaaa 14756807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 14880175 - 14880412
Alignment:
Q  1 atggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacaggatctttccctgccatatttggatcataattataaaattgtatccc 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||| |||||||||      
T  14880175 atggataataaaatacaagtgtttttgctaatgcttttctaataacatcaacaggatctttccctgccatatttggatcatggttatagaattgtatcaa 14880274  T
Q  101 aggaacttgccaacgtaatgaatcttggtcatcaatgtctgagagtagttttgtttcatgaggtgtgggttttgatggagttatcagttcaggttcatgc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||| |||||| ||| ||    
T  14880275 aggaacttgccaacgtaatgaatcttggtcatcaatgtctgagagtagctttgtttcatgaagtgtgggttttgatggtgttatcaattcagggtcacgc 14880374  T
Q  201 ctcttcaccgtgaacactagagcatgggccataattat 238  Q
    ||||||||  |||| |||||||  | ||||||||||||    
T  14880375 ctcttcactttgaatactagagatttggccataattat 14880412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 383 - 544
Target Start/End: Original strand, 23314873 - 23315034
Alignment:
Q  383 ggaaaattattggtagacatacccttttcaataccattcttgtacacctgcctatgtggatggcatctttgtaattttgttaaaaagcaaagggtaaaat 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23314873 ggaaaattattggtagacatacccttttcaataccattcttgtacacctgcctatgtggatggcatctttgtaattttgttaaaaagcaaagggtaaaat 23314972  T
Q  483 tggaattttggatctgttttttcattctttctcaatctcagagaactctgttctcgttctct 544  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23314973 tggaattttggatctgttttttcattctttctcaatctcagagaactctgttctcgttctct 23315034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 14769683 - 14769860
Alignment:
Q  1 atggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacaggatctttccctgccatatttggatcataattataaaattgtatccc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||| |    
T  14769683 atggataataaaacacaagtgtttttgctaatgcttttctaataaaatcaacaggatctttacctgccatatttggatcatatttataaaattgtatcac 14769782  T
Q  101 aggaacttgccaacgtaatgaatcttggtcatcaatgtctgagagtagttttgtttcatgaggtgtgggttttgatgg 178  Q
     |||| |||  |||||||    ||||||||||| |||||||| |||| |||| ||||||||||||| |||||||||||    
T  14769783 tggaatttgaaaacgtaacccttcttggtcatctatgtctgaaagtaattttatttcatgaggtgttggttttgatgg 14769860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 14789732 - 14789909
Alignment:
Q  1 atggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacaggatctttccctgccatatttggatcataattataaaattgtatccc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||      
T  14789732 atggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtctttccctgccatatttggatcatacttgtaaaattgtatcaa 14789831  T
Q  101 aggaacttgccaacgtaatgaatcttggtcatcaatgtctgagagtagttttgtttcatgaggtgtgggttttgatgg 178  Q
    | ||  |||  ||||||||   ||||||||||| || ||||| |||| |||| ||||||||||||| |||||||||||    
T  14789832 acgagtttgataacgtaatccttcttggtcatctatatctgaaagtaattttatttcatgaggtgttggttttgatgg 14789909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 386 - 544
Target Start/End: Complemental strand, 39209062 - 39208902
Alignment:
Q  386 aaattattggtagacatacccttttcaataccattcttgtacacctgcctatgtggatggcatctttgtaattttgttaaaaagcaaagggtaaaattgg 485  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||| ||||||||||||    
T  39209062 aaattattggtagacacacccttttcaataccattcttgtacacctgcctatgtggatgacatctctataattttgttaaaaaacaaggggtaaaattgg 39208963  T
Q  486 aattt--tggatctgttttttcattctttctcaatctcagagaactctgttctcgttctct 544  Q
    |||||     ||||||||||||||||||||||||||||| | |||||||||||| ||||||    
T  39208962 aatttcaaatatctgttttttcattctttctcaatctcacataactctgttctcattctct 39208902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 386 - 544
Target Start/End: Original strand, 50445989 - 50446149
Alignment:
Q  386 aaattattggtagacatacccttttcaataccattcttgtacacctgcctatgtggatggcatctttgtaattttgttaaaaagcaaagggtaaaattgg 485  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||| ||||||||||||    
T  50445989 aaattattggtagacacacccttttcaataccattcttgtacacctgcctatgtggatgacatctctataattttgttaaaaaacaaggggtaaaattgg 50446088  T
Q  486 aattt--tggatctgttttttcattctttctcaatctcagagaactctgttctcgttctct 544  Q
    |||||     ||||||||||||||||||||||||||||| | |||||||||||| ||||||    
T  50446089 aatttcaaatatctgttttttcattctttctcaatctcacaaaactctgttctcattctct 50446149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 14874889 - 14875063
Alignment:
Q  1 atggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacaggatctttccctgccatatttggatcataattataaaattgtatccc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||  |||| |||| || |||||||||||| |    
T  14874889 atggataataaaacacaagtgtttttgctaatgcttttctaataacatcaacaggatctttctctgccataactggaacatagttgtaaaattgtatcac 14874988  T
Q  101 aggaacttgccaacgtaatgaatcttggtcatcaatgtctgagagtagttttgtttcatgaggtgtgggttttga 175  Q
    ||| | |||  |||||||    ||||||||||| || ||||| |||| |||| ||||||||||||| ||||||||    
T  14874989 aggcatttgataacgtaacccttcttggtcatctatatctgaaagtaattttatttcatgaggtgttggttttga 14875063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 147; Significance: 3e-77; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 15 - 245
Target Start/End: Complemental strand, 35368856 - 35368626
Alignment:
Q  15 acaagtgtttttgctaatgcttttctaataatatcaacaggatctttccctgccatatttggatcataattataaaattgtatcccaggaacttgccaac 114  Q
    |||||||||||||| | |||||||||||||| ||||||| | ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35368856 acaagtgtttttgcaattgcttttctaataacatcaacaaggtctttcccttccataattggatcataattataaaattgtatcccaggaacttgccaac 35368757  T
Q  115 gtaatgaatcttggtcatcaatgtctgagagtagttttgtttcatgaggtgtgggttttgatggagttatcagttcaggttcatgcctcttcaccgtgaa 214  Q
    ||||||||||||| |||||||||| |||||||  |||| |||||||||||||||  |||||||||||||| | |||||||||| ||||||||||||||||    
T  35368756 gtaatgaatcttgatcatcaatgtttgagagtgattttatttcatgaggtgtggaatttgatggagttattaattcaggttcacgcctcttcaccgtgaa 35368657  T
Q  215 cactagagcatgggccataattataaactat 245  Q
     | |||||  |||||||||||||||||||||    
T  35368656 tattagagattgggccataattataaactat 35368626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 378 - 481
Target Start/End: Original strand, 8972973 - 8973075
Alignment:
Q  378 aaaaaggaaaattattggtagacatacccttttcaataccattcttgtacacctgcctatgtggatggcatctttgtaattttgttaaaaagcaaagggt 477  Q
    |||||||| ||||||  || ||||| || ||||||||||| | |||||||||||||| | |||||||||| |||||||||||||||||||||||| |||     
T  8972973 aaaaaggataattatcagtggacat-cctttttcaataccttccttgtacacctgccaacgtggatggcaactttgtaattttgttaaaaagcaaggggc 8973071  T
Q  478 aaaa 481  Q
    ||||    
T  8973072 aaaa 8973075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 147; Significance: 3e-77; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 386 - 544
Target Start/End: Original strand, 17712549 - 17712707
Alignment:
Q  386 aaattattggtagacatacccttttcaataccattcttgtacacctgcctatgtggatggcatctttgtaattttgttaaaaagcaaagggtaaaattgg 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  17712549 aaattattggtagacatacccttttcaataccattcttgtacacctgcctatgtggatggcatctctgtaattttgttaaaaagaaaagggtaaaattgg 17712648  T
Q  486 aattttggatctgttttttcattctttctcaatctcagagaactctgttctcgttctct 544  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17712649 aattttgaatctgttttttcattctttctcaatctcagagaactctgttctcgttctct 17712707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 386 - 544
Target Start/End: Original strand, 19013806 - 19013964
Alignment:
Q  386 aaattattggtagacatacccttttcaataccattcttgtacacctgcctatgtggatggcatctttgtaattttgttaaaaagcaaagggtaaaattgg 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  19013806 aaattattggtagacatacccttttcaataccattcttgtacacctgcctatgtggatggcatctctgtaattttgttaaaaagaaaagggtaaaattgg 19013905  T
Q  486 aattttggatctgttttttcattctttctcaatctcagagaactctgttctcgttctct 544  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19013906 aattttgaatctgttttttcattctttctcaatctcagagaactctgttctcgttctct 19013964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 420 - 484
Target Start/End: Complemental strand, 7237842 - 7237778
Alignment:
Q  420 tcttgtacacctgcctatgtggatggcatctttgtaattttgttaaaaagcaaagggtaaaattg 484  Q
    |||| |||||||||| |||||||||||| ||||||||||||||||||||| || |||||||||||    
T  7237842 tcttatacacctgcccatgtggatggcagctttgtaattttgttaaaaaggaaggggtaaaattg 7237778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 407 - 481
Target Start/End: Original strand, 32391450 - 32391524
Alignment:
Q  407 ttttcaataccattcttgtacacctgcctatgtggatggcatctttgtaattttgttaaaaagcaaagggtaaaa 481  Q
    ||||||||||| | |||||||||||||| |  ||||||||| |||||||||||||||||||||||| ||| ||||    
T  32391450 ttttcaataccttccttgtacacctgccaacatggatggcaactttgtaattttgttaaaaagcaaggggcaaaa 32391524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 481
Target Start/End: Original strand, 22513922 - 22514022
Alignment:
Q  380 aaaggaaaattattggtagacatacccttttcaataccattcttgtacacctgcctatgtggatggcatctttgtaattttgttaaaaagcaaagggtaa 479  Q
    |||||| ||||||  |||||||| || |||||||||||   |||||||||||||| |  ||||||||| |||||||||||||||||||||||| ||| ||    
T  22513922 aaaggataattatcagtagacat-cctttttcaatacctcccttgtacacctgccaacatggatggcaactttgtaattttgttaaaaagcaaggggcaa 22514020  T
Q  480 aa 481  Q
    ||    
T  22514021 aa 22514022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 33003102 - 33003152
Alignment:
Q  15 acaagtgtttttgctaatgcttttctaataatatcaacaggatctttccct 65  Q
    |||||||||||||| | |||||||||||||| ||||||||| |||||||||    
T  33003102 acaagtgtttttgcaattgcttttctaataacatcaacagggtctttccct 33003152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 33003343 - 33003400
Alignment:
Q  188 ttcaggttcatgcctcttcaccgtgaacactagagcatgggccataattataaactat 245  Q
    |||||||||| ||||||||||||| || | |||||  |||||||||||||||||||||    
T  33003343 ttcaggttcacgcctcttcaccgtaaatattagagattgggccataattataaactat 33003400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Complemental strand, 37508333 - 37508288
Alignment:
Q  414 taccattcttgtacacctgcctatgtggatggcatctttgtaattt 459  Q
    ||||| ||||||||||||||| ||||||||||||  ||||||||||    
T  37508333 taccactcttgtacacctgcccatgtggatggcagttttgtaattt 37508288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 9e-53; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 14857542 - 14857365
Alignment:
Q  1 atggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacaggatctttccctgccatatttggatcataattataaaattgtatccc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| |    
T  14857542 atggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtctttccctgccatatttggatcatatttataaaattggatcgc 14857443  T
Q  101 aggaacttgccaacgtaatgaatcttggtcatcaatgtctgagagtagttttgtttcatgaggtgtgggttttgatgg 178  Q
     |||| |||  |||||||    ||||||||||| |||||||| |||| |||| ||||||||||||  |||||||||||    
T  14857442 tggaatttgaaaacgtaacccttcttggtcatctatgtctgaaagtaattttatttcatgaggtgcaggttttgatgg 14857365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 91845 - 92041
Alignment:
Q  1 atggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacaggatctttccctgccatatttggatcataattataaaattgtatccc 100  Q
    ||||||||||||||||||| ||||| || |  ||||||||||||| | ||||||| ||||| ||| ||||| |||||| ||| || ||||||||||||      
T  91845 atggataataaaacacaagcgttttcgcaagggcttttctaataacaacaacagggtctttgccttccataattggattatagttgtaaaattgtatcaa 91944  T
Q  101 aggaacttgccaacgtaatgaatcttggtcatcaatgtctgagagtagttttgtttcatgaggtgtgggttttgatggagttatcagttcaggttca 197  Q
    |||||| ||  | ||||| || | ||||||||| |||||||||||| ||||| |||||||||| ||||||||||||||| |||||| ||||||||||    
T  91945 aggaacatgaaagcgtaaagattgttggtcatctatgtctgagagtcgttttatttcatgaggagtgggttttgatggacttatcaattcaggttca 92041  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 420 - 484
Target Start/End: Original strand, 22501880 - 22501944
Alignment:
Q  420 tcttgtacacctgcctatgtggatggcatctttgtaattttgttaaaaagcaaagggtaaaattg 484  Q
    |||| |||||||||| |||||||||||| ||||||||||||||||||||| || |||||||||||    
T  22501880 tcttatacacctgcccatgtggatggcagctttgtaattttgttaaaaaggaaggggtaaaattg 22501944  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 420 - 484
Target Start/End: Original strand, 42838128 - 42838192
Alignment:
Q  420 tcttgtacacctgcctatgtggatggcatctttgtaattttgttaaaaagcaaagggtaaaattg 484  Q
    |||| |||||||||| |||||||||||| ||||||||||||||||||||| || |||||||||||    
T  42838128 tcttatacacctgcccatgtggatggcagctttgtaattttgttaaaaaggaaggggtaaaattg 42838192  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 481
Target Start/End: Original strand, 31698259 - 31698344
Alignment:
Q  396 tagacatacccttttcaataccattcttgtacacctgcctatgtggatggcatctttgtaattttgttaaaaagcaaagggtaaaa 481  Q
    |||||||||| ||||| | |||  |||| ||||| |||| ||||||||||||  |||||| | |||||||||||  ||||||||||    
T  31698259 tagacataccattttctacacctctcttatacacatgcccatgtggatggcaattttgtagtgttgttaaaaagttaagggtaaaa 31698344  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 472
Target Start/End: Original strand, 11604889 - 11604974
Alignment:
Q  387 aattattggtagacatacccttttcaataccattcttgtacacctgcctatgtggatggcatctttgtaattttgttaaaaagcaa 472  Q
    |||||||||| |||| ||  |||||||||||||| || ||||| |||||||||| | ||||||| ||||||||||||| |||||||    
T  11604889 aattattggttgacacacttttttcaataccattgttatacacttgcctatgtgcaaggcatctctgtaattttgttataaagcaa 11604974  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 420 - 484
Target Start/End: Original strand, 24768349 - 24768413
Alignment:
Q  420 tcttgtacacctgcctatgtggatggcatctttgtaattttgttaaaaagcaaagggtaaaattg 484  Q
    |||| |||||||||| |||||||||||| ||||||||||||||||||||| ||  ||||||||||    
T  24768349 tcttatacacctgcccatgtggatggcagctttgtaattttgttaaaaaggaagaggtaaaattg 24768413  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 414 - 466
Target Start/End: Complemental strand, 36963038 - 36962986
Alignment:
Q  414 taccattcttgtacacctgcctatgtggatggcatctttgtaattttgttaaa 466  Q
    ||||| ||||||||||||||| ||||||||| ||  |||||||||| ||||||    
T  36963038 taccactcttgtacacctgcccatgtggatgacagttttgtaatttcgttaaa 36962986  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 466
Target Start/End: Original strand, 16767895 - 16767947
Alignment:
Q  414 taccattcttgtacacctgcctatgtggatggcatctttgtaattttgttaaa 466  Q
    ||||| ||||||||||||||| ||||||||||||  |||||||||| ||||||    
T  16767895 taccactcttgtacacctgcccatgtggatggcagttttgtaatttcgttaaa 16767947  T

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