View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5897_low_6 (Length: 523)

Name: NF5897_low_6
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5897_low_6
NF5897_low_6
[»] chr4 (12 HSPs)
chr4 (177-502)||(37252927-37253252)
chr4 (180-459)||(37232684-37232960)
chr4 (7-110)||(37252745-37252848)
chr4 (362-502)||(37237772-37237912)
chr4 (184-354)||(37257059-37257238)
chr4 (346-461)||(37245014-37245129)
chr4 (189-268)||(37244881-37244960)
chr4 (349-442)||(37241994-37242087)
chr4 (386-450)||(37257240-37257304)
chr4 (272-323)||(37237700-37237751)
chr4 (344-436)||(37242193-37242285)
chr4 (40-108)||(37256922-37256990)
[»] scaffold1652 (2 HSPs)
scaffold1652 (354-459)||(396-501)
scaffold1652 (182-257)||(595-670)
[»] chr6 (8 HSPs)
chr6 (183-267)||(14316682-14316766)
chr6 (183-268)||(14253954-14254039)
chr6 (183-262)||(14248144-14248223)
chr6 (354-425)||(14254119-14254190)
chr6 (351-426)||(14316847-14316922)
chr6 (351-413)||(14248312-14248374)
chr6 (302-452)||(14351689-14351839)
chr6 (383-461)||(14248539-14248617)
[»] scaffold1176 (3 HSPs)
scaffold1176 (344-459)||(1294-1409)
scaffold1176 (183-262)||(371-450)
scaffold1176 (354-459)||(177-282)
[»] scaffold0902 (2 HSPs)
scaffold0902 (183-260)||(3200-3277)
scaffold0902 (344-424)||(3361-3441)
[»] scaffold1801 (2 HSPs)
scaffold1801 (344-428)||(92-176)
scaffold1801 (221-261)||(268-308)
[»] scaffold0002 (1 HSPs)
scaffold0002 (383-461)||(165109-165187)


Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 177 - 502
Target Start/End: Original strand, 37252927 - 37253252
Alignment:
Q  177 ctcgagtaactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgttttcggaagg 276  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37252927 ctcgagtaactctctatagtatcaaagcggcggcgaaaaccactacagcagcagatccggcaacggtaaatctgttcaaagcggcaccgttttcggaagg 37253026  T
Q  277 tccttcagaaggaggagtggagatggatgatggagtaagagcaggagagacagcgggagagtcggatgaagcaggaggaggagatggtggagagttgatg 376  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37253027 tccttcggaaggaggagtggaaatggatgatggagtaagagcaggagagacagcgggagagtcggatgaagcaggaggaggagatggtggagagttgatg 37253126  T
Q  377 gctgaaggtgaaggagatggagcgttcttcacaggtactggagcagatgccgccggtgagtcagcggagggagagatcgcaggtgtggcaacaggggata 476  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37253127 gctgaaggtgaaggagatggagcgttcttcacaggtatgggagcagatgccgccggtgagtcagcggagggagagatcgcaggtgtggcaacaggggata 37253226  T
Q  477 tggtgggagataaagatggagattga 502  Q
    ||||||||||| ||||||||||||||    
T  37253227 tggtgggagatgaagatggagattga 37253252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 180 - 459
Target Start/End: Original strand, 37232684 - 37232960
Alignment:
Q  180 gagtaactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgttttcggaaggtcc 279  Q
    ||||||||||||| | |||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||   || ||| |    
T  37232684 gagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcgccgttt---gatggtgc 37232780  T
Q  280 ttcagaaggaggagtggagatggatgatggagtaagagcaggagagacagcgggagagtcggatgaagcaggaggaggagatggtggagagttgatggct 379  Q
    ||||| ||||||||||||||| ||||||||||||| |||||||| | | ||||| ||  | || |||||||||||||||||||||||||||||||||||     
T  37232781 ttcagcaggaggagtggagatcgatgatggagtaacagcaggagcggcggcgggtgaaccagaggaagcaggaggaggagatggtggagagttgatggcg 37232880  T
Q  380 gaaggtgaaggagatggagcgttcttcacaggtactggagcagatgccgccggtgagtcagcggagggagagatcgcagg 459  Q
    || || |||||||||||||  |||||||||||| | |||| |||||| |||||||||| |||||||||||||||||||||    
T  37232881 gatggcgaaggagatggagaattcttcacaggtgcgggaggagatgcagccggtgagtgagcggagggagagatcgcagg 37232960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 37252745 - 37252848
Alignment:
Q  7 aagaataaaaaatgtatcactgattaattaaagtaataaatagattacagaaaataatcgaatgaataaatcgtcgtcgcacagatcgaaaccgagaaac 106  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37252745 aagaagaaaaaatgtgtcactgattaattaaagtaataaatagattacagaaaataatcgaatgaataaatcgtcgtcgcacagatcgaaacagagaaac 37252844  T
Q  107 aaca 110  Q
    ||||    
T  37252845 aaca 37252848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 362 - 502
Target Start/End: Original strand, 37237772 - 37237912
Alignment:
Q  362 ggtggagagttgatggctgaaggtgaaggagatggagcgttcttcacaggtactggagcagatgccgccggtgagtcagcggagggagagatcgcaggtg 461  Q
    ||||||||||||| ||| || | | ||||||||||||   ||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||    
T  37237772 ggtggagagttgacggcggatgctaaaggagatggagacgtcttcacaggtacgggaggagatgccaccggtgagtcagcggagggagagatcgcaggtg 37237871  T
Q  462 tggcaacaggggatatggtgggagataaagatggagattga 502  Q
    ||||||| || |||||||| |||||| | || |||||||||    
T  37237872 tggcaacgggtgatatggttggagatgatgaaggagattga 37237912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 184 - 354
Target Start/End: Original strand, 37257059 - 37257238
Alignment:
Q  184 aactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccg---ttttcggaaggtc-- 278  Q
    ||||||||| | ||||||||| |||||||||||||  |||||||||||||| |||||||| |||||||| ||||||||| ||   || || ||||||       
T  37257059 aactctctacatcatcaaagcagcggcgaaaaccataacagcagcagatccagcaacggtgaatctgttaaaagcggcggcggagttgtctgaaggtgaa 37257158  T
Q  279 ----cttcagaaggaggagtggagatggatgatggagtaagagcaggagagacagcgggagagtcggatgaagcaggagg 354  Q
        |||||||||||| ||| ||||||||||||||||||| ||||||||| |||||||||||||| || |||||||||||    
T  37257159 ggtgcttcagaaggagtagtagagatggatgatggagtaacagcaggagaaacagcgggagagtcagaggaagcaggagg 37257238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 346 - 461
Target Start/End: Original strand, 37245014 - 37245129
Alignment:
Q  346 agcaggaggaggagatggtggagagttgatggctgaaggtgaaggagatggagcgttcttcacaggtactggagcagatgccgccggtgagtcagcggag 445  Q
    |||||||||||||||||||||||||||| |||  || ||||| ||||| |||  | ||||| |||| || |||||||||||||||| ||||| |||||||    
T  37245014 agcaggaggaggagatggtggagagttgttggtggacggtgatggagaaggaatgctcttcgcaggcacgggagcagatgccgccgttgagttagcggag 37245113  T
Q  446 ggagagatcgcaggtg 461  Q
    ||||| ||||| ||||    
T  37245114 ggagaaatcgctggtg 37245129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 37244881 - 37244960
Alignment:
Q  189 tctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgttt 268  Q
    |||||| ||||||| | || ||||||||||| |||||||||||||||||||| || |||||||| |||||||||||||||    
T  37244881 tctatatcatcaaaacagcagcgaaaaccacaacagcagcagatccggcaacagtgaatctgttgaaagcggcgccgttt 37244960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 349 - 442
Target Start/End: Original strand, 37241994 - 37242087
Alignment:
Q  349 aggaggaggagatggtggagagttgatggctgaaggtgaaggagatggagcgttcttcacaggtactggagcagatgccgccggtgagtcagcg 442  Q
    |||||||||||||||||||||||||||||| || ||||||||||| |||  | || | |||||||| |||| ||||||| ||||||||| ||||    
T  37241994 aggaggaggagatggtggagagttgatggcggacggtgaaggagaaggactgctcgttacaggtacgggagaagatgccaccggtgagttagcg 37242087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 386 - 450
Target Start/End: Original strand, 37257240 - 37257304
Alignment:
Q  386 gaaggagatggagcgttcttcacaggtactggagcagatgccgccggtgagtcagcggagggaga 450  Q
    |||||||| |||||||||||||||||||| |||| ||||||| |||||||| ||||||| |||||    
T  37257240 gaaggagaaggagcgttcttcacaggtacgggaggagatgccaccggtgagacagcggaaggaga 37257304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 323
Target Start/End: Original strand, 37237700 - 37237751
Alignment:
Q  272 gaaggtccttcagaaggaggagtggagatggatgatggagtaagagcaggag 323  Q
    |||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  37237700 gaaggtgcttcagaaggaggagtagagatggatgatggagtaacagcaggag 37237751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 436
Target Start/End: Original strand, 37242193 - 37242285
Alignment:
Q  344 gaagcaggaggaggagatggtggagagttgatggctgaaggtgaaggagatggagcgttcttcacaggtactggagcagatgccgccggtgag 436  Q
    ||||||||||||||||||| |||| |||| |  ||  | ||||||||||||||||||||| ||| ||| || |||| |||| |||||||||||    
T  37242193 gaagcaggaggaggagatgttggatagttaactgcgaacggtgaaggagatggagcgttcatcaaaggaacgggagaagataccgccggtgag 37242285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 37256922 - 37256990
Alignment:
Q  40 taataaatagattacagaaaataatcgaatgaataaatcgtcgtcgcacagatcgaaaccgagaaacaa 108  Q
    |||| ||||||||||||||||||||  ||||||| ||| || ||| ||||||||||||| ||| |||||    
T  37256922 taatcaatagattacagaaaataataaaatgaatgaatggtagtcacacagatcgaaacagagcaacaa 37256990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 354 - 459
Target Start/End: Complemental strand, 501 - 396
Alignment:
Q  354 gaggagatggtggagagttgatggctgaaggtgaaggagatggagcgttcttcacaggtactggagcagatgccgccggtgagtcagcggagggagagat 453  Q
    ||||||||||||||||||||||||| || ||||||||||| |||  | ||||||||||||| |||||||||||| ||| ||||| |||||||||||| ||    
T  501 gaggagatggtggagagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgccaccgttgagttagcggagggagaaat 402  T
Q  454 cgcagg 459  Q
    ||||||    
T  401 cgcagg 396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 670 - 595
Alignment:
Q  182 gtaactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaag 257  Q
    ||||||||||| | ||||||||| || | ||||||||| |||||||||||||||||||| ||||||||||||||||    
T  670 gtaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaag 595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 14316682 - 14316766
Alignment:
Q  183 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgtt 267  Q
    |||||||||| | ||||||||| || ||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||    
T  14316682 taactctctacatcatcaaagcagcagcgaaaaccacgacagcagcagatccggcaagggtaaatctgttcaaagcggcgtcgtt 14316766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 183 - 268
Target Start/End: Original strand, 14253954 - 14254039
Alignment:
Q  183 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgttt 268  Q
    |||||||||| | ||||||||| || ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |||||    
T  14253954 taactctctacatcatcaaagcagcagcgaaaaccacgacagcagcagatccagcaactgtaaatctgttcaaagcggcgtcgttt 14254039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 14248144 - 14248223
Alignment:
Q  183 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcg 262  Q
    |||||||||| | ||||||||| ||  | |||||||| ||||||| |||||||||||| |||||||||||||||||||||    
T  14248144 taactctctacatcatcaaagcagcaacaaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcg 14248223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 354 - 425
Target Start/End: Original strand, 14254119 - 14254190
Alignment:
Q  354 gaggagatggtggagagttgatggctgaaggtgaaggagatggagcgttcttcacaggtactggagcagatg 425  Q
    ||||||||||||||||||||||||| || ||||||||||| |||  | ||||||||||||| ||||||||||    
T  14254119 gaggagatggtggagagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatg 14254190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 351 - 426
Target Start/End: Original strand, 14316847 - 14316922
Alignment:
Q  351 gaggaggagatggtggagagttgatggctgaaggtgaaggagatggagcgttcttcacaggtactggagcagatgc 426  Q
    |||||||||||| ||||||||||||||| || ||||||  ||| |||  | ||||||||||||| |||||||||||    
T  14316847 gaggaggagatgatggagagttgatggcagacggtgaaatagaaggactgctcttcacaggtacgggagcagatgc 14316922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 413
Target Start/End: Original strand, 14248312 - 14248374
Alignment:
Q  351 gaggaggagatggtggagagttgatggctgaaggtgaaggagatggagcgttcttcacaggta 413  Q
    |||||||||||| ||||||||||||||| || ||||||||||| |||  | ||||||||||||    
T  14248312 gaggaggagatgatggagagttgatggcagacggtgaaggagaaggactgctcttcacaggta 14248374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 452
Target Start/End: Original strand, 14351689 - 14351839
Alignment:
Q  302 gatgatggagtaagagcaggagagacagcgggagagtcggatgaagcaggaggaggagatggtggagagttgatggctgaaggtgaaggagatggagcgt 401  Q
    ||||||||||||| |||||||| ||||||||||||  |  | |||||| ||||||  ||||  |||||||| |||||  |  |||||||||||||||| |    
T  14351689 gatgatggagtaacagcaggagcgacagcgggagaaccaaaggaagcatgaggagaggatgtcggagagttaatggcaaacagtgaaggagatggagcat 14351788  T
Q  402 tcttcacaggtactggagcagatgccgccggtgagtcagcggagggagaga 452  Q
    || | ||||| || |||| ||||  || || ||||| |||||| |||||||    
T  14351789 tcataacaggaacgggagaagatatcgtcgatgagttagcggaaggagaga 14351839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 461
Target Start/End: Original strand, 14248539 - 14248617
Alignment:
Q  383 ggtgaaggagatggagcgttcttcacaggtactggagcagatgccgccggtgagtcagcggagggagagatcgcaggtg 461  Q
    ||||||||||| |||||  | |||| |||||| |||| ||| ||| | |||||||||||||||||||| || |||||||    
T  14248539 ggtgaaggagagggagcactattcagaggtaccggagaagacgccactggtgagtcagcggagggagaaatagcaggtg 14248617  T

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Target: scaffold1176 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 344 - 459
Target Start/End: Complemental strand, 1409 - 1294
Alignment:
Q  344 gaagcaggaggaggagatggtggagagttgatggctgaaggtgaaggagatggagcgttcttcacaggtactggagcagatgccgccggtgagtcagcgg 443  Q
    |||||| ||||||||||||||||| ||||||||||  | ||||||||||| |||  | |||||||||||||  ||||| ||||||||| ||||| ||| |    
T  1409 gaagcatgaggaggagatggtggacagttgatggcacacggtgaaggagaaggactgctcttcacaggtacacgagcatatgccgccgttgagttagctg 1310  T
Q  444 agggagagatcgcagg 459  Q
    ||||||| ||||||||    
T  1309 agggagaaatcgcagg 1294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 450 - 371
Alignment:
Q  183 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcg 262  Q
    |||||||||| | ||||||||| ||   ||||||||| ||||||| |||||||||||| |||||||||||||||||||||    
T  450 taactctctacatcatcaaagcagcaatgaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcg 371  T

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Target: scaffold1176; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 459
Target Start/End: Complemental strand, 282 - 177
Alignment:
Q  354 gaggagatggtggagagttgatggctgaaggtgaaggagatggagcgttcttcacaggtactggagcagatgccgccggtgagtcagcggagggagagat 453  Q
    |||||||||||  |||||||||||| || ||||||||||| |||  | ||||||||||| | |||||||| ||||| | ||||| ||| |||||||| ||    
T  282 gaggagatggtctagagttgatggcagatggtgaaggagaaggactgctcttcacaggttcaggagcagacgccgcggttgagttagctgagggagaaat 183  T
Q  454 cgcagg 459  Q
    ||||||    
T  182 cgcagg 177  T

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Target: scaffold0902 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 3200 - 3277
Alignment:
Q  183 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcgg 260  Q
    |||||||||| | ||||||||| || | ||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  3200 taactctctacatcatcaaagcagccgtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcgg 3277  T

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Target: scaffold0902; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 344 - 424
Target Start/End: Original strand, 3361 - 3441
Alignment:
Q  344 gaagcaggaggaggagatggtggagagttgatggctgaaggtgaaggagatggagcgttcttcacaggtactggagcagat 424  Q
    |||||| |||||||||||||||||||||||||||| || ||||||||||| |||  | ||||||||||||| |||||||||    
T  3361 gaagcatgaggaggagatggtggagagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagat 3441  T

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Target: scaffold1801 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 428
Target Start/End: Complemental strand, 176 - 92
Alignment:
Q  344 gaagcaggaggaggagatggtggagagttgatggctgaaggtgaaggagatggagcgttcttcacaggtactggagcagatgccg 428  Q
    |||||| ||||||||||| |||||||||||||||| || ||||||||||| |||  | |||||||||| || |||||||||||||    
T  176 gaagcatgaggaggagattgtggagagttgatggcagacggtgaaggagaaggactgctcttcacaggaacaggagcagatgccg 92  T

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Target: scaffold1801; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 308 - 268
Alignment:
Q  221 acagcagcagatccggcaacggtaaatctgttcaaagcggc 261  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  308 acagcagcagatccggcaactgtaaatctgttcaaagcggc 268  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 461
Target Start/End: Complemental strand, 165187 - 165109
Alignment:
Q  383 ggtgaaggagatggagcgttcttcacaggtactggagcagatgccgccggtgagtcagcggagggagagatcgcaggtg 461  Q
    ||||||||||| |||||  | |||| |||||| |||| ||| ||| | |||||||||||||||||||| || |||||||    
T  165187 ggtgaaggagagggagcactattcagaggtaccggagaagacgccactggtgagtcagcggagggagaaatagcaggtg 165109  T

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