View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5897_low_9 (Length: 428)
Name: NF5897_low_9
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5897_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 9 - 398
Target Start/End: Complemental strand, 15142770 - 15142375
Alignment:
| Q |
9 |
agcataggtagcagacaagcatattttgttactacatgtgaaatagtcgtctataagattttttataatgttggaacatgtgaagagctttatagtaata |
108 |
Q |
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| T |
15142770 |
agcataggtagcagacaagcatattttgttactacatgtgaaatagtcgtctataagattttttataatgttggaacatgtgaaaagctttatagtaata |
15142671 |
T |
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| Q |
109 |
atttaactcaagtgtagaaacaaatcagtttgttaaggagataagaaattccatcacttcaagaaacactgaattttatagatagacatcacggataacc |
208 |
Q |
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| T |
15142670 |
atttaactcaagtgtagaaacaaatcagtttgttaaggagataagaaattccatcacttcaagaaacactgaattttatagatagacatcacggataacc |
15142571 |
T |
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| Q |
209 |
aattagggtatcatttacttgcattaccaaataactgaggcataagggttatgtgtcttattcttttaagacnnnnnnnntggggtcaggaggaatct-- |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
15142570 |
aattagggtatcatttacttgcattaccaaataactgaggcataagggttatgtgtcttattcttttaagac-aaaaatatggggtcaggaggaatctat |
15142472 |
T |
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| Q |
307 |
-----accctagccattaactataacctataataagccacaaaacattccaaaataatatctaattacatacttttctcccacacctattttctata |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15142471 |
atctaaccctagccattaactataacctataataagccacaaaacattccaaaataatatctaattacatacttttctcccacacctattttctata |
15142375 |
T |
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