View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5898-Insertion-1 (Length: 897)

Name: NF5898-Insertion-1
Description: NF5898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5898-Insertion-1
NF5898-Insertion-1
[»] chr4 (5 HSPs)
chr4 (339-781)||(41768084-41768526)
chr4 (158-292)||(41767926-41768060)
chr4 (814-897)||(41768554-41768638)
chr4 (22-88)||(16841203-16841272)
chr4 (95-163)||(24216193-24216261)
[»] chr5 (14 HSPs)
chr5 (8-168)||(37704299-37704459)
chr5 (8-88)||(37437445-37437525)
chr5 (8-76)||(37698573-37698641)
chr5 (87-168)||(37698424-37698505)
chr5 (93-169)||(37441574-37441650)
chr5 (87-169)||(37391389-37391471)
chr5 (95-168)||(37534731-37534804)
chr5 (95-163)||(37713260-37713328)
chr5 (95-168)||(37595961-37596037)
chr5 (87-168)||(37411754-37411835)
chr5 (95-168)||(37641512-37641585)
chr5 (87-163)||(37437337-37437413)
chr5 (87-169)||(37430387-37430469)
chr5 (118-163)||(37380802-37380847)
[»] chr3 (1 HSPs)
chr3 (95-169)||(14554689-14554760)


Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 339 - 781
Target Start/End: Original strand, 41768084 - 41768526
Alignment:
Q  339 aatttggcatcttataattttcaaatttttgtagtgcaatatttgtcattttactatccattttgattgattgattaattgtataaattatgccgttact 438  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41768084 aatttggcattttataattttcaaatttttgtagtgcaatatttgtccttttactatccattttgattgattgattaattgtataaattatgccgttact 41768183  T
Q  439 tgttcgtatgtagaattgtcgtagttctccgcattcttgaacattaaataattaaatgtatgcactatcaaatttatttatttacacaatgaatctagtc 538  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41768184 tgttcgtatgtagaattgtcgtagttctccgcattcttgaacattaaataattaaatgtatgcactatcaaatttatttatttacacaataaatctagtc 41768283  T
Q  539 attaaacacttcatgttctcgttcacggtaagaaaaagatactttacaaaggagaaggggtgtagaaagaaatcaaaaaatgtagtagcaagcctaaatt 638  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  41768284 attaaacacttcattttctcgttcacggtaagaaaaagatactttacaaaggagaaggggtgtagaaagaaatcaaaaaatgtagtagcaagcccaactt 41768383  T
Q  639 ataataaggggtagaaaatccaacccactttaataatnnnnnnnntaaaataagaaaagggatannnnnnnccaaaacgaagtcgtttggcctatgattg 738  Q
    | ||||| |||||||||||||||||||||||||| ||        |||||||||||||||||||       |||||||||||||||||||||| ||||||    
T  41768384 acaataaagggtagaaaatccaacccactttaattataaaaaaaataaaataagaaaagggatatttttttccaaaacgaagtcgtttggcctgtgattg 41768483  T
Q  739 cagtaacataaacattacgcaataatcaaacagaaattaaaca 781  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  41768484 cagtaacataaacattacgcaataatcaaacagaaattaaaca 41768526  T

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Target: chr4; HSP #2
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 158 - 292
Target Start/End: Original strand, 41767926 - 41768060
Alignment:
Q  158 tttactccctatcactctccattgtcctccctgcagacacgtcattgctagaataattaaaaccagacctttgttttcatcttgcaccacgaagtaattt 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41767926 tttactccctatcactctccattgtcctccctgcagacacgtcattgctagaataattaaaaccagacctttgttttcatcttgcaccacgaagtaattt 41768025  T
Q  258 taatctaatgatatcatggtgttacaaagagggtg 292  Q
    |||||||||||||||||||||||||||||||||||    
T  41768026 taatctaatgatatcatggtgttacaaagagggtg 41768060  T

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Target: chr4; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 814 - 897
Target Start/End: Original strand, 41768554 - 41768638
Alignment:
Q  814 tcgaagcaataaccatggcaggtagattaacaaacgtagcatcacaaatctta-gcggaaacggcgtcgttcaccgatctgtagc 897  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41768554 tcgaagcaataaccatggcaggtagattgacaaacgtagcatcacaaatcttaggcggaaacggcgtcgttcaccgatctgtagc 41768638  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 16841203 - 16841272
Alignment:
Q  22 cttagtttcaggttatgtttcctatataaata---gaggctaatcaattggtatatcccaaatcatcaaa 88  Q
    ||||||||||||||||||||||||||||||||   ||||||||||| ||||||||||  |||||||||||    
T  16841203 cttagtttcaggttatgtttcctatataaatagaggaggctaatcagttggtatatcgtaaatcatcaaa 16841272  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 24216193 - 24216261
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttact 163  Q
    ||||||||||||||| ||||| |||| || |||||||||||| |||| ||| |||||||||||||||||    
T  24216193 tccttttttattctaatgcctcatttgacctttcacttgttcatgttgttgttgcttactcattttact 24216261  T

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Target: chr5 (Bit Score: 153; Significance: 1e-80; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 37704459 - 37704299
Alignment:
Q  8 tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcccaaatcatcaaaatgcggtccttttttattc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37704459 tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcctaaatcatcaaaatgcggtccttttttattc 37704360  T
Q  108 tattgccttattttacttttcacttgttcttgttattgctgcttactcattttactcccta 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37704359 tattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttccta 37704299  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 37437525 - 37437445
Alignment:
Q  8 tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcccaaatcatcaaa 88  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  37437525 tttggtccttgccccttagtttcaagttatgtttcctatataaatagaggctaatcatttggtatatcctaaatcatcaaa 37437445  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 37698641 - 37698573
Alignment:
Q  8 tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcc 76  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37698641 tttggtcctttccccgtagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcc 37698573  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 37698505 - 37698424
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttactcccta 168  Q
    ||||| ||||||||||||||||||||||||||||| | |||||||| |||||||| ||| ||||||||||||||||| ||||    
T  37698505 aaatggggtccttttttattctattgccttattttgcctttcactttttcttgttgttgttgcttactcattttacttccta 37698424  T

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Target: chr5; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 37441650 - 37441574
Alignment:
Q  93 ggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttactccctat 169  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||| || ||||||||||||||||||||| |||||    
T  37441650 ggtccttttttattttattgccttattttacctttcacatgttcttcttgttgctgcttactcattttacttcctat 37441574  T

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Target: chr5; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 87 - 169
Target Start/End: Original strand, 37391389 - 37391471
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttactccctat 169  Q
    ||||| ||||||| |||||| |||||||||||||||| |||||||||||| |||| ||| ||||||||||||||||| |||||    
T  37391389 aaatggggtccttgtttattttattgccttattttacctttcacttgttcatgttgttgttgcttactcattttacttcctat 37391471  T

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Target: chr5; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 37534804 - 37534731
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttactcccta 168  Q
    ||||||||||||| ||||||||||||||| |||||||| |||||||| ||| || |||||||||||||| ||||    
T  37534804 tccttttttattccattgccttattttacctttcactttttcttgttgttgttgattactcattttacttccta 37534731  T

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Target: chr5; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 37713328 - 37713260
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttact 163  Q
    ||||||||||||| ||||||||||||||| |||||||| |||| ||| ||| |||||||||||||||||    
T  37713328 tccttttttattccattgccttattttacctttcacttcttctcgttgttgttgcttactcattttact 37713260  T

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Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 37596037 - 37595961
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttc---ttgttattgctgcttactcattttactcccta 168  Q
    ||||||||||||| ||||||||||||||| |||||||| |||   ||||| ||||||||||||||||||||| ||||    
T  37596037 tccttttttattccattgccttattttacctttcactttttcttgttgttgttgctgcttactcattttacttccta 37595961  T

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Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 37411754 - 37411835
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttactcccta 168  Q
    ||||| |||||| |||| |||||||| | |||||||| |||||||||||||||||  ||||| |||||||||||||| ||||    
T  37411754 aaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgttgctgctgtttactcattttacttccta 37411835  T

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Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 37641585 - 37641512
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttactcccta 168  Q
    ||||||||||||| ||||||||||||||| |||||||| || ||||| ||| || |||||||||||||| ||||    
T  37641585 tccttttttattccattgccttattttacctttcacttcttgttgttgttgttgattactcattttacttccta 37641512  T

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Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 37437413 - 37437337
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttact 163  Q
    ||||| |||||||||||||||| ||||||| |||| |  |||||||||||| ||| ||| |||||||||| ||||||    
T  37437413 aaatggggtccttttttattcttttgccttgttttgcccttcacttgttctcgttgttgttgcttactcactttact 37437337  T

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Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 169
Target Start/End: Complemental strand, 37430469 - 37430387
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttactccctat 169  Q
    ||||| ||||||||| | ||||||| |||||| || | |||||||||||||||||  ||||||| |||| ||||||| |||||    
T  37430469 aaatggggtccttttgttttctatttccttatcttgcctttcacttgttcttgttgatgctgctaactctttttacttcctat 37430387  T

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Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 37380802 - 37380847
Alignment:
Q  118 ttttacttttcacttgttcttgttattgctgcttactcattttact 163  Q
    |||||| ||||||||||||||||| ||| |||||||||||||||||    
T  37380802 ttttacctttcacttgttcttgttgttgttgcttactcattttact 37380847  T

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Target: chr3 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 14554760 - 14554689
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttactccctat 169  Q
    ||||||||||||||||||||||||||||| |||||||| |||   |||||| ||||||||||||||||| |||||    
T  14554760 tccttttttattctattgccttattttacctttcactttttc---ttattgttgcttactcattttacttcctat 14554689  T

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