View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5898-Insertion-3 (Length: 522)
Name: NF5898-Insertion-3
Description: NF5898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5898-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 427
Target Start/End: Original strand, 44973708 - 44974128
Alignment:
| Q |
8 |
atagtttgcttgatttgcctgtggttgtaaaggagccacctttggagagtgatgggaatggaaaagggtactcagaggttttgaatagtcaacaacaacc |
107 |
Q |
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| T |
44973708 |
atagtttacttgatttgcctgtggttgtaaaggagccacctttggagagtgatgggaatggaaaagagtattcagaggttttgaatagtcaacaacaacc |
44973807 |
T |
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| Q |
108 |
tgctactcctaactcttcatctatttcatctgcttctagtgaagcaatcaatgatgaacacaataaaactgttgaccaaactaataatcaactcaacaaa |
207 |
Q |
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| T |
44973808 |
tgctactcctaactcttcatctatttcatctgcttctagtgaagcaatcaatgatgaacacaataaaactgttgaccaaactaataatcaactcaacaaa |
44973907 |
T |
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| Q |
208 |
cagtgagtttcattttcttcttctatttttatcttctaggtgcttaaagannnnnnnatggaagggcaaagatggga-nnnnnnngggtgaaacnnnnnn |
306 |
Q |
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| T |
44973908 |
cagtgagtttcattttcttcttctatttttatcttctaggtgcttaaagatttttttatggaagggcaaagatgggattttttttgggtgaaacaaaaaa |
44974007 |
T |
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| Q |
307 |
nngttttggaatttgattatgagcttagtttttcacctacctaattttgtttaaaaagttttagttttgatttcatgaattatgaatgtcttcattattt |
406 |
Q |
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| T |
44974008 |
aagttttggaatttgattatgagcttagtttttcacctacctaattttgtttaaaaagttttagttttgatttcatgaattatgaatgtcttcattattt |
44974107 |
T |
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| Q |
407 |
gtggttctattctactaatat |
427 |
Q |
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| T |
44974108 |
gtggttctattctattaatat |
44974128 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 38850875 - 38850813
Alignment:
| Q |
100 |
caacaacctgctactcctaactcttcatctatttcatctgcttctagtgaagcaatcaatgat |
162 |
Q |
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| T |
38850875 |
caacaacctgcaactcctaattcttgttcgatttcatcagcatctagtgaagcagtcaatgat |
38850813 |
T |
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