View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5898_high_2 (Length: 458)
Name: NF5898_high_2
Description: NF5898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5898_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Complemental strand, 12813624 - 12813194
Alignment:
| Q |
19 |
ttttcagggcattttagcccgaccaaaaataaactcgctatccgttagggctaacatgtacgaaacatgagtaatctgtttggatgacatagctgaaaat |
118 |
Q |
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| T |
12813624 |
ttttcagggcattttagccccaccaaaaataaactcgctatccgttagggctaacatgtacgaaacatgagtaacctgtttggatgacatagctaaaaat |
12813525 |
T |
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| Q |
119 |
actaaactaaattagtaacatctatgaagcactaaattagaacccgctacccattagggccatcgtgtacgagacatgagtagcccatttgaatgacata |
218 |
Q |
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| T |
12813524 |
actaaactaaattagtaacatatatgaagcactaaattagaacccgctacccattagggccaacgtgtacgagacatgagtagcccatttgaatgacata |
12813425 |
T |
|
| Q |
219 |
gctaaagtactaaactaaattagtaacattcatgaaacgctaaattagtaacatt---gtaaacttcctttaatcatttttgttaaacaaaatatgtggc |
315 |
Q |
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| T |
12813424 |
gctaaagtactaaactaaattagtaacattcatgaaacactaaattagtaacatttaagtaaacttcctttaatcatttttgtt--acaaaatacgtggc |
12813327 |
T |
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| Q |
316 |
acaaaaactagacttgttacttgtatactttttaattttgtataaaaaatgacttgtattgttatttaaactttaattaaacaattattacatctactgt |
415 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12813326 |
acaaaaactagacttgttacatgtatactttttaattttgtataaaaaatgacttgtattgttatttaaactttaattaaacaattattacatctactgt |
12813227 |
T |
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| Q |
416 |
aaattcttctctttggtgctctaaccctctgtg |
448 |
Q |
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| T |
12813226 |
aaattcttctctttggtactctaaccctttgtg |
12813194 |
T |
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