View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5898_low_6 (Length: 289)
Name: NF5898_low_6
Description: NF5898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5898_low_6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 61 - 289
Target Start/End: Original strand, 12812826 - 12813054
Alignment:
| Q |
61 |
tgataaagaaccatgatgttgatcaatgccatgatttgaagtgagcacatcatttatatgacaaggaagtaaatttataattgacacatgaattacgttc |
160 |
Q |
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| T |
12812826 |
tgataaagaaccatgatgttgatcaatgccataatttgaagtgagcacatcatttatatgacaaggaagtaaatttataattgacacatgaattacattc |
12812925 |
T |
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| Q |
161 |
taaatgtcaagtcttatttcaactttatgatacgtggacatgaccatgcatgttccatatatgttgctatcttgggaccaatctatatgatgattgttag |
260 |
Q |
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| T |
12812926 |
taaatgtcaagtcttatttcaactttatgatacatggacatgaccatgcatgttccatatatgttgctatctttggaccaatctatatgatgattgttag |
12813025 |
T |
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| Q |
261 |
agaatcaaaggattacaacattgaagact |
289 |
Q |
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| T |
12813026 |
agaatcaaaagattacaacattgaagact |
12813054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 12812748 - 12812807
Alignment:
| Q |
1 |
ctataagcatacaatttttagnnnnnnnnnccttttgcaaaattattatggaagacaaaa |
60 |
Q |
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| T |
12812748 |
ctataagcatacaatttttagtttttttttccttttgcaaaattattatggaagacaaaa |
12812807 |
T |
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