View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5898_low_7 (Length: 252)

Name: NF5898_low_7
Description: NF5898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5898_low_7
NF5898_low_7
[»] chr2 (4 HSPs)
chr2 (1-234)||(33082027-33082260)
chr2 (1-234)||(33091887-33092120)
chr2 (1-234)||(33099383-33099616)
chr2 (33-234)||(33072318-33072519)
[»] chr5 (1 HSPs)
chr5 (21-220)||(3931197-3931395)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 33082027 - 33082260
Alignment:
Q  1 tcaataaatttcacagccaagttagccagaaataccattaagaaatccttccttacgacgttcaaatccaggctataatagtttcttctctctctttgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  33082027 tcaataaatttcacagccaagttagccagaaataccattaagaaatccttccttacgaccttcaaatccaggctataatagcttcttctctctctttgca 33082126  T
Q  101 atcttcctcagtttctcatcattaatcttctcagctatatttgctgaccttttttagttgtttctctgccttcaactgatcccttgtttgaaccctctct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  33082127 atcttcctcagtttctcatcattaatcttctcagctatatttgctgaccttttttagttgtttctcggacttcaactgatcccttgtttgaaccctctct 33082226  T
Q  201 tcccatttcactgcgtttttctgctgccttttct 234  Q
    ||||||||||||||||||||||||||||||||||    
T  33082227 tcccatttcactgcgtttttctgctgccttttct 33082260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 33091887 - 33092120
Alignment:
Q  1 tcaataaatttcacagccaagttagccagaaataccattaagaaatccttccttacgacgttcaaatccaggctataatagtttcttctctctctttgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  33091887 tcaataaatttcacagccaagttagccagaaataccattaagaaatccttccttacgaccttcaaatccaggctataatagcttcttctctctctttgca 33091986  T
Q  101 atcttcctcagtttctcatcattaatcttctcagctatatttgctgaccttttttagttgtttctctgccttcaactgatcccttgtttgaaccctctct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  33091987 atcttcctcagtttctcatcattaatcttctcagctatatttgctgaccttttttagttgtttctcggacttcaactgatcccttgtttgaaccctctct 33092086  T
Q  201 tcccatttcactgcgtttttctgctgccttttct 234  Q
    ||||||||||||||||||||||||||||||||||    
T  33092087 tcccatttcactgcgtttttctgctgccttttct 33092120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 33099383 - 33099616
Alignment:
Q  1 tcaataaatttcacagccaagttagccagaaataccattaagaaatccttccttacgacgttcaaatccaggctataatagtttcttctctctctttgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  33099383 tcaataaatttcacagccaagttagccagaaataccattaagaaatccttccttacgaccttcaaatccaggctataatagcttcttctctctctttgca 33099482  T
Q  101 atcttcctcagtttctcatcattaatcttctcagctatatttgctgaccttttttagttgtttctctgccttcaactgatcccttgtttgaaccctctct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  33099483 atcttcctcagtttctcatcattaatcttctcagctatatttgctgaccttttttagttgtttctcggacttcaactgatcccttgtttgaaccctctct 33099582  T
Q  201 tcccatttcactgcgtttttctgctgccttttct 234  Q
    ||||||||||||||||||||||||||||||||||    
T  33099583 tcccatttcactgcgtttttctgctgccttttct 33099616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 33072318 - 33072519
Alignment:
Q  33 taccattaagaaatccttccttacgacgttcaaatccaggctataatagtttcttctctctctttgcaatcttcctcagtttctcatcattaatcttctc 132  Q
    |||||||| |||| ||||||||||||| |||||||||||||  |||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  33072318 taccattacgaaaaccttccttacgaccttcaaatccaggccgtaatagcttcttctctctctttgcaatcttcctcagtttcttatcattaatcctctc 33072417  T
Q  133 agctatatttgctgaccttttttagttgtttctctgccttcaactgatcccttgtttgaaccctctcttcccatttcactgcgtttttctgctgcctttt 232  Q
    ||||||||||||  ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||| || ||||| ||    
T  33072418 agctatatttgcaaacctttttttgttgtttctctgccttcaactgatcccttgattgaaccctctcttcccatttctctgcatttttatgttgcctctt 33072517  T
Q  233 ct 234  Q
    ||    
T  33072518 ct 33072519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 21 - 220
Target Start/End: Original strand, 3931197 - 3931395
Alignment:
Q  21 gttagccagaaataccattaagaaatccttccttacgacgttcaaatccaggctataatagtttcttctctctctttgcaatcttcctcagtttctcatc 120  Q
    ||||||||||| | | ||||| ||| |||||||| |||| |||||| || |||  |||||| || ||||||||||||||||||||||||| ||||| |||    
T  3931197 gttagccagaactgctattaataaaaccttccttgcgaccttcaaagcccggccgtaatagctttttctctctctttgcaatcttcctcattttcttatc 3931296  T
Q  121 attaatcttctcagctatatttgctgaccttttttagttgtttctctgccttcaactgatcccttgtttgaaccctctcttcccatttcactgcgttttt 220  Q
    ||||||| |||||||||||||  |||||||||| |  ||| ||||||||||||||||||||||||| |||||| ||||||||||||||| |||| |||||    
T  3931297 attaatcctctcagctatattatctgaccttttct-tttgcttctctgccttcaactgatcccttgattgaactctctcttcccatttctctgcattttt 3931395  T

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