View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5898_low_8 (Length: 246)

Name: NF5898_low_8
Description: NF5898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5898_low_8
NF5898_low_8
[»] chr3 (11 HSPs)
chr3 (19-237)||(18026943-18027161)
chr3 (28-128)||(27392694-27392794)
chr3 (19-127)||(11418386-11418494)
chr3 (33-128)||(27375876-27375971)
chr3 (47-122)||(27347244-27347320)
chr3 (38-97)||(28081443-28081502)
chr3 (35-97)||(28147263-28147325)
chr3 (32-97)||(28183467-28183532)
chr3 (28-58)||(19472099-19472129)
chr3 (186-231)||(27392867-27392913)
chr3 (35-84)||(28131660-28131709)
[»] chr2 (1 HSPs)
chr2 (33-136)||(22390790-22390893)
[»] scaffold0043 (1 HSPs)
scaffold0043 (47-127)||(55093-55172)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 18026943 - 18027161
Alignment:
Q  19 acctaccaccaacctttccaaagcgacaaaatgctccacattcccactccattcctgccacaaatgaatgggaaataaattacaaatgcatgaaataaga 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18026943 acctaccagcaacctttccaaagcgacaaaatgctccacattcccactccattcctgccacaaatgaatgggaaataaattacaaatgcatgaaataaga 18027042  T
Q  119 gtgaagaaacggtagaactaagtcacttaaataatataacaaacatccatatactgctcaacatgcataaacaaccgatattaaataagcttaacttttc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18027043 gtgaagaaacggtagaactaagtcacttaaataatataacaaacatccatatactgctcaacatgcataaacaaccgatattaaataagcttaacttttc 18027142  T
Q  219 tgtttaatttgagtataat 237  Q
    ||||||||||||| |||||    
T  18027143 tgtttaatttgagcataat 18027161  T

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Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 27392694 - 27392794
Alignment:
Q  28 caacctttccaaagcgacaaaatgctccacattcccactccattcctgccacaaatgaatgggaaataaattacaaatgcatgaaataagagtgaagaaa 127  Q
    |||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  27392694 caacttttccaaagcgacaaaatgctccacattcccgctcgattcctgccacaaatgaatgggaaataaattacacatacatgaaataagagtgaagaaa 27392793  T
Q  128 c 128  Q
    |    
T  27392794 c 27392794  T

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Target: chr3; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 11418494 - 11418386
Alignment:
Q  19 acctaccaccaacctttccaaagcgacaaaatgctccacattcccactccattcctgccacaaatgaatgggaaataaattacaaatgcatgaaataaga 118  Q
    |||||||  |||||||||||||||||||||||||||||  ||||||||| ||||||||||||||| |||||||||||||||||| || ||||||||||||    
T  11418494 acctaccttcaacctttccaaagcgacaaaatgctccatgttcccactcaattcctgccacaaataaatgggaaataaattacacatacatgaaataaga 11418395  T
Q  119 gtgaagaaa 127  Q
    |||||||||    
T  11418394 gtgaagaaa 11418386  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 33 - 128
Target Start/End: Complemental strand, 27375971 - 27375876
Alignment:
Q  33 tttccaaagcgacaaaatgctccacattcccactccattcctgccacaaatgaatgggaaataaattacaaatgcatgaaataagagtgaagaaac 128  Q
    ||||||| | || ||||||||| || ||| ||||| ||||||||||||||||||||| |||||||||||| |||||| |||||||||||| |||||    
T  27375971 tttccaacgagagaaaatgctcaacgttcacactcaattcctgccacaaatgaatggcaaataaattacacatgcataaaataagagtgacgaaac 27375876  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 27347320 - 27347244
Alignment:
Q  47 aaatgctccacattcccactccattcctgccacaaatgaatgggaaataaattacaaatgcatgaa-ataagagtga 122  Q
    |||| |||||| ||| ||||| ||||||||||||||||||||| |||||||||||| |||||| || ||||||||||    
T  27347320 aaattctccacgttcgcactcaattcctgccacaaatgaatggcaaataaattacacatgcataaatataagagtga 27347244  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 28081502 - 28081443
Alignment:
Q  38 aaagcgacaaaatgctccacattcccactccattcctgccacaaatgaatgggaaataaa 97  Q
    ||||||| |||||| ||||||||||||||| |||||||| | ||||||||||||||||||    
T  28081502 aaagcgagaaaatgatccacattcccactcaattcctgcaataaatgaatgggaaataaa 28081443  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 28147325 - 28147263
Alignment:
Q  35 tccaaagcgacaaaatgctccacattcccactccattcctgccacaaatgaatgggaaataaa 97  Q
    |||||||||| |||||  ||||||||||||||| |||||||  | ||||||||||||||||||    
T  28147325 tccaaagcgagaaaattatccacattcccactcaattcctgtaataaatgaatgggaaataaa 28147263  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 28183532 - 28183467
Alignment:
Q  32 ctttccaaagcgacaaaatgctccacattcccactccattcctgccacaaatgaatgggaaataaa 97  Q
    |||||||||||   |||||| || |||||||||||| |||||||| | ||||||||||||||||||    
T  28183532 ctttccaaagcacaaaaatgttcgacattcccactcaattcctgcaataaatgaatgggaaataaa 28183467  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 58
Target Start/End: Complemental strand, 19472129 - 19472099
Alignment:
Q  28 caacctttccaaagcgacaaaatgctccaca 58  Q
    |||||||||||||||||||||||||||||||    
T  19472129 caacctttccaaagcgacaaaatgctccaca 19472099  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 27392867 - 27392913
Alignment:
Q  186 taaacaaccgatattaaataagcttaactt-ttctgtttaatttgag 231  Q
    ||||||||||||||||||||||||||||||  |||| ||||||||||    
T  27392867 taaacaaccgatattaaataagcttaacttgatctgcttaatttgag 27392913  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 28131709 - 28131660
Alignment:
Q  35 tccaaagcgacaaaatgctccacattcccactccattcctgccacaaatg 84  Q
    ||||||| || |||||| ||||||||||||||| |||||||| |||||||    
T  28131709 tccaaagagagaaaatggtccacattcccactcaattcctgcaacaaatg 28131660  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 136
Target Start/End: Complemental strand, 22390893 - 22390790
Alignment:
Q  33 tttccaaagcgacaaaatgctccacattcccactccattcctgccacaaatgaatgggaaataaattacaaatgcatgaaataagagtgaagaaacggta 132  Q
    ||||||| | || |||||||||||| ||| ||||| ||||||||||||||||||||| |||||||||||| |||||| |||||||||||| ||||| |||    
T  22390893 tttccaaggagagaaaatgctccacgttcgcactcaattcctgccacaaatgaatggcaaataaattacacatgcataaaataagagtgacgaaacagta 22390794  T
Q  133 gaac 136  Q
    ||||    
T  22390793 gaac 22390790  T

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Target: scaffold0043 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 55093 - 55172
Alignment:
Q  47 aaatgctccacattcccactccattcctgccacaaatgaatgggaaataaattacaaatgcatgaaataagagtgaagaaa 127  Q
    |||| |||||| ||| ||||| |||||||||||||||||||||||||||||| ||| |||||| |||||||||||| ||||    
T  55093 aaattctccacgttcgcactcaattcctgccacaaatgaatgggaaataaatcacacatgcat-aaataagagtgacgaaa 55172  T

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