View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5899-Insertion-1 (Length: 1090)

Name: NF5899-Insertion-1
Description: NF5899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5899-Insertion-1
NF5899-Insertion-1
[»] chr8 (4 HSPs)
chr8 (560-1059)||(18014869-18015363)
chr8 (558-844)||(18010866-18011153)
chr8 (810-1059)||(43445233-43445488)
chr8 (839-876)||(32529109-32529146)
[»] chr4 (5 HSPs)
chr4 (560-844)||(25322962-25323247)
chr4 (558-844)||(15537144-15537430)
chr4 (741-831)||(16937497-16937589)
chr4 (962-1059)||(16942667-16942766)
chr4 (839-876)||(28394896-28394933)
[»] chr1 (3 HSPs)
chr1 (684-860)||(42039863-42040039)
chr1 (962-1059)||(24012151-24012250)
chr1 (839-876)||(6831307-6831344)
[»] chr7 (2 HSPs)
chr7 (810-1059)||(43586545-43586800)
chr7 (810-1059)||(35965979-35966234)
[»] chr3 (3 HSPs)
chr3 (8-140)||(3359185-3359317)
chr3 (509-560)||(3721289-3721340)
chr3 (341-387)||(3359797-3359843)
[»] chr6 (1 HSPs)
chr6 (810-1059)||(26257683-26257938)


Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 560 - 1059
Target Start/End: Complemental strand, 18015363 - 18014869
Alignment:
560 tgttggttatatggtataaatgaaaaataatatgatagacagggaagaatacgttgaaatggaatgggaaattaatt-attaatttcactaaaacaatac 658  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
18015363 tgttggttatatggtataaatgaaaaataatatgatagacagggaagaatacgttgaaatggaatgggaaattgatttattaatttcactaaaacaatac 18015264  T
659 acttaatagtgtttcacaaaacaaaacagaacacagctacatcaccactaaactaggaacgtgggataacaacaactgctttctcctaaagtgtaggtac 758  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||          |    
18015263 acttaatagtgtttcacaaaacaaaacagaacacaactacatcaccactaaactaggaacgtgggataacaacaactgctttctcctaa----------c 18015174  T
759 cacttattgactaaaataaaaaactgaaacaatagagaataaagataaatcagccacgtaatgcagtccaaaagcaataattaacactcctccttgcttt 858  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18015173 cacttattgactaaaataaaaaactgaaacaatagggaataaagataaatcagccacgtaatgcagtccaaaagcaataattaacactcctccttgcttt 18015074  T
859 aggatctgcaaactccaactttttgccttaaaaactcaaacttgctgacaggaagtggctttgtaaacatgtctgctaattgatcctctgacttgc-ata 957  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
18015073 aggatctgcaaactccaactttttgccttaaaaactcaaacttgttgacaggaagtggctttgtaaacatgtctgctaattgatcctttgacttgcaata 18014974  T
958 aacc-aagtcacttctccattttgctgcatctcttcttaag-agtagagcttgatgttaaaatgtttagtc-tgccatgacacactggatcc-ttgaaat 1053  Q
    |||| |||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
18014973 aaccaaagttacttctccattttgctgcatctc-tcttaagaagtagagcttgatgttaaaatgtttagtcttgccatgacacactggatcctttgaaat 18014875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 558 - 844
Target Start/End: Complemental strand, 18011153 - 18010866
Alignment:
558 tttgttggttatatggtataaatgaaaaataatatgatagacagggaagaatacgttgaaatggaatgggaaattaatt-attaatttcactaaaacaat 656  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
18011153 tttgttggttatatggtataaatgaaaaataatatgatagacagggaagaatacgttgaaatggaatgggaaattgatttattaatttcactaaaacaat 18011054  T
657 acacttaatagtgtttcacaaaacaaaacagaacacagctacatcaccactaaactaggaacgtgggataacaacaactgctttctcctaaagtgtaggt 756  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
18011053 acacttaatagtgtttcacaaaacaaaacagaacacaactacatcaccactaaactaggatcgtgggataacaacaactgctttctcctaaagtgtaggt 18010954  T
757 accacttattgactaaaataaaaaactgaaacaatagagaataaagataaatcagccacgtaatgcagtccaaaagcaataattaaca 844  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
18010953 accacttattgactaaaataaaaaactgaaacaatagggaataaagataaatcagccacgtaatgcagtccaaaagcaataattaaca 18010866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 810 - 1059
Target Start/End: Complemental strand, 43445488 - 43445233
Alignment:
810 agccacgtaatgcagtcc-aaaagcaa-taattaacactcctccttgctttaggatctgcaaactccaactttttgccttaaaaactcaaacttgctgac 907  Q
    |||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| ||    
43445488 agccacataatgcagtcctaaaagcaaataattaacactcctccttgctttaggatctgcaaactccaattttctgccttaagaactcaaacttgctaac 43445389  T
908 aggaagtggctttgtaaacatgtctgctaattgatcctctgacttgc-ataaacc-aagtcacttctccattttgctgcatctcttcttaag-agtagag 1004  Q
    ||||||||| |||||||| |  ||||| | ||| || |||||  ||| ||||||| |||| ||||||||| |||| || | ||| ||||||| ||||||     
43445388 aggaagtggttttgtaaataaatctgccagttgctcttctgatctgcaataaaccaaagtgacttctccactttgttgaacctc-tcttaagaagtagaa 43445290  T
1005 cttgatgttaaaatgtttagtc-tgccatgacacactggatcc-ttgaaattgcaat 1059  Q
    ||| ||||| |||||||||||| | |||||||| ||||||||| |||||||||||||    
43445289 cttaatgttgaaatgtttagtcttcccatgacatactggatcctttgaaattgcaat 43445233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 839 - 876
Target Start/End: Complemental strand, 32529146 - 32529109
Alignment:
839 ttaacactcctccttgctttaggatctgcaaactccaa 876  Q
    |||||||||||||||||||||||| |||||||| ||||    
32529146 ttaacactcctccttgctttaggagctgcaaacaccaa 32529109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 560 - 844
Target Start/End: Original strand, 25322962 - 25323247
Alignment:
560 tgttggttatatggtataaatgaaaaataatatgatagacagggaagaatacgttgaaatggaatgggaaattaatt-attaatttcactaaaacaatac 658  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
25322962 tgttggttatatggtataaatgaaaaataatatgatagacagggaagaatacgttgaaatggaatgggaaattgatttattaatttcactaaaacaatac 25323061  T
659 acttaatagtgtttcacaaaacaaaacagaacacagctacatcaccactaaactaggaacgtgggataacaacaactgctttctcctaaagtgtaggtac 758  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
25323062 acttaatagtgtttcacaaaacaaaacagaacacaactacatcaccactaaactaggaacgtgggataacaacaactgctttctcctaaagtgtaggtac 25323161  T
759 cacttattgactaaaataaaaaactgaaacaatagagaataaagataaatcagccacgtaatgcagtccaaaagcaataattaaca 844  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
25323162 cacttattgactaaaataaaaaactgaaacaatagggaataaagataaatcagccacgtaatgcagtccaaaagcaataattaaca 25323247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 558 - 844
Target Start/End: Complemental strand, 15537430 - 15537144
Alignment:
558 tttgttggttatatggtataaatgaaaaataatatgatagacagggaagaatacgttgaaatggaatgggaaattaat-tattaatttcactaaaacaat 656  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||    
15537430 tttgttggttatatggtataaatgaaaaataatatgatagacagggaagaatacattgaaatggaatgggaaattgatatattaatttcactaaaacaat 15537331  T
657 acacttaatagtgtttcacaaaacaaaacagaacacagctacatcaccactaaactaggaacgtgggataacaacaactgctttctcctaaagtgtaggt 756  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
15537330 acacttaatagtgtttcacaaaacaaaacagaacacaactacatcaccactaaactaggaacgtgggataacaacaactgctttctcctaaagtgtaggt 15537231  T
757 accacttattgactaaaataaaaaactgaaacaatagagaataaagataaatcagccacgtaatgcagtccaaaagcaataattaaca 844  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
15537230 accacttattgactaaaataaaaaactgaaa-aatagaaaataaagataaatcagccacgcaatgcagtccaaaagcaataattaaca 15537144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 741 - 831
Target Start/End: Complemental strand, 16937589 - 16937497
Alignment:
741 ctcctaaagtgtaggtaccacttattgactaaaataaaaaactgaaacaatagagaataaagataaat--cagccacgtaatgcagtccaaaa 831  Q
    |||||||| |||||| |||||| ||||||||||| |  |||||||||||| | | ||||| |||||||   ||||||||||||||||||||||    
16937589 ctcctaaaatgtaggaaccactaattgactaaaacactaaactgaaacaaaataaaataaggataaataaaagccacgtaatgcagtccaaaa 16937497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 962 - 1059
Target Start/End: Complemental strand, 16942766 - 16942667
Alignment:
962 aagtcacttctccattttgctgcatctcttcttaagagtagagcttgatgttaaaatgtttagtc-tgccatgacacactggatcc-ttgaaattgcaat 1059  Q
    |||| ||||||||| |||| |||| ||||| | |  ||||||||||||| || |||||||||||| | |||| ||| ||||||||| |||||||||||||    
16942766 aagtgacttctccactttgttgcacctcttgtaagaagtagagcttgatattgaaatgtttagtcttcccataacatactggatcctttgaaattgcaat 16942667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 839 - 876
Target Start/End: Complemental strand, 28394933 - 28394896
Alignment:
839 ttaacactcctccttgctttaggatctgcaaactccaa 876  Q
    |||||||||||||||||||||||| |||||||| ||||    
28394933 ttaacactcctccttgctttaggagctgcaaacaccaa 28394896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 165; Significance: 1e-87; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 1e-87
Query Start/End: Original strand, 684 - 860
Target Start/End: Original strand, 42039863 - 42040039
Alignment:
684 acagaacacagctacatcaccactaaactaggaacgtgggataacaacaactgctttctcctaaagtgtaggtaccacttattgactaaaataaaaaact 783  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
42039863 acagaacacaactacatcaccactaaactaggaacgtgggataacaacaactgctttctcctaaagtgtaggtactacttattgactaaaataaaaaact 42039962  T
784 gaaacaatagagaataaagataaatcagccacgtaatgcagtccaaaagcaataattaacactcctccttgctttag 860  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42039963 gaaataatagagaataaagataaatcagccacgtaatgcagtccaaaagcaataattaacactcctccttgctttag 42040039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 962 - 1059
Target Start/End: Original strand, 24012151 - 24012250
Alignment:
962 aagtcacttctccattttgctgcatctcttcttaaga-gtagagcttgatgttaaaatgtttagtc-tgccatgacacactggatcc-ttgaaattgcaa 1058  Q
    ||||||||||||||||||||||||| ||| | ||||| ||| |||||||||||||||||||||||| | |||||||| ||||||||| ||||||||||||    
24012151 aagtcacttctccattttgctgcatttct-cgtaagaagtaaagcttgatgttaaaatgtttagtcttcccatgacatactggatcctttgaaattgcaa 24012249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 839 - 876
Target Start/End: Original strand, 6831307 - 6831344
Alignment:
839 ttaacactcctccttgctttaggatctgcaaactccaa 876  Q
    |||||||||||||||||||||||| |||||||| ||||    
6831307 ttaacactcctccttgctttaggagctgcaaacaccaa 6831344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 2e-49; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 810 - 1059
Target Start/End: Complemental strand, 43586800 - 43586545
Alignment:
810 agccacgtaatgcagtcc-aaaagcaa-taattaacactcctccttgctttaggatctgcaaactccaactttttgccttaaaaactcaaacttgctgac 907  Q
    |||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| ||    
43586800 agccacataatgcagtcctaaaagcaaataattaacactcctccttgctttaggatctgcaaactccaattttctgccttaagaactcaaacttgctaac 43586701  T
908 aggaagtggctttgtaaacatgtctgctaattgatcctctgacttgc-ataaacc-aagtcacttctccattttgctgcatctcttcttaag-agtagag 1004  Q
    ||||||||| |||||||| |  ||||| | ||| || |||||  ||| ||||||| |||| ||||||||| |||| || | ||| ||||||| |||||||    
43586700 aggaagtggttttgtaaataaatctgccagttgctcttctgatctgcaataaaccaaagtgacttctccactttgttgaacctc-tcttaagaagtagag 43586602  T
1005 cttgatgttaaaatgtttagtc-tgccatgacacactggatcc-ttgaaattgcaat 1059  Q
    ||||||||| |||||||||||| | |||||||| ||||||||| |||||||||||||    
43586601 cttgatgttgaaatgtttagtcttcccatgacatactggatcctttgaaattgcaat 43586545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 810 - 1059
Target Start/End: Original strand, 35965979 - 35966234
Alignment:
810 agccacgtaatgcagtcc-aaaagcaa-taattaacactcctccttgctttaggatctgcaaactccaactttttgccttaaaaactcaaacttgctgac 907  Q
    |||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| ||    
35965979 agccacataatgcagtcctaaaagcaaataattaacactcctccttgctttaggatctgcaaactccaattttctgccttaagaactcaaacttgctaac 35966078  T
908 aggaagtggctttgtaaacatgtctgctaattgatcctctgacttgc-ataaa-ccaagtcacttctccattttgctgcatctcttcttaag-agtagag 1004  Q
    ||||||||| |||||||| |  ||||| | ||| || |||||  ||| ||||| | |||| ||||||||| |||| || | ||| ||||||| |||||||    
35966079 aggaagtggttttgtaaataaatctgccagttgctcttctgatctgcaataaagcaaagtgacttctccactttgttgaacctc-tcttaagaagtagag 35966177  T
1005 cttgatgttaaaatgtttagtc-tgccatgacacactggatcc-ttgaaattgcaat 1059  Q
    ||| ||||| |||||||||||| | |||||||| ||||||||| |||||||||||||    
35966178 cttaatgttgaaatgtttagtcttcccatgacatactggatcctttgaaattgcaat 35966234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 2e-49; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 3359185 - 3359317
Alignment:
8 tgtctttctgtttctatcactggtcccttctcacaaaaattatttgtgattccggattttgttggacaagaggatttttcaagattggttccgagtcacc 107  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||| || |||||||||||||||||| |||||||||| ||||||||    
3359185 tgtctttctgtttctttcactggtcccttctcacaaaaattatttgtgaattcggattatgctggacaagaggatttttcgagattggttctgagtcacc 3359284  T
108 atatgagcctgtgttgagccttatctgtatata 140  Q
    || ||||||||||||||||||||||||||||||    
3359285 atctgagcctgtgttgagccttatctgtatata 3359317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 509 - 560
Target Start/End: Complemental strand, 3721340 - 3721289
Alignment:
509 atacgttagaaactatagtatattaatttattattgtaatgtgtgtaatttt 560  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||    
3721340 atacgttagaaactatcgtatattaatttattattgtaatgtgtgtgatttt 3721289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 387
Target Start/End: Original strand, 3359797 - 3359843
Alignment:
341 cttaaagtgtcaccatttcgttcacatagactaaacattttattaca 387  Q
    ||||||||||||| ||||||||| |||||||  ||||||||||||||    
3359797 cttaaagtgtcacgatttcgttcgcatagaccgaacattttattaca 3359843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 1e-44; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 810 - 1059
Target Start/End: Complemental strand, 26257938 - 26257683
Alignment:
810 agccacgtaatgcagtcc-aaaagcaa-taattaacactcctccttgctttaggatctgcaaactccaactttttgccttaaaaactcaaacttgctgac 907  Q
    |||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| ||    
26257938 agccacataatgcagtcctaaaagcaaataattaacactcctccttgctttaggatctgcaaactccaattttctgccttaagaactcaaacttgctaac 26257839  T
908 aggaagtggctttgtaaacatgtctgctaattgatcctctgacttgc-ataaacc-aagtcacttctccattttgctgcatctcttcttaag-agtagag 1004  Q
    ||||||||| |||||||| |  ||||| | ||| || | |||  ||| ||||||| |||| ||||||||| |||| || | ||| ||||||| |||||||    
26257838 aggaagtggttttgtaaataaatctgccacttgctcttttgatctgcaataaaccaaagtgacttctccactttgttgaacctc-tcttaagaagtagag 26257740  T
1005 cttgatgttaaaatgtttagtc-tgccatgacacactggatcc-ttgaaattgcaat 1059  Q
    ||| ||||| |||||||||||| | |||||||| ||||||||| |||||||||||||    
26257739 ctttatgttgaaatgtttagtcttcccatgacatactggatcctttgaaattgcaat 26257683  T

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