View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5899-Insertion-4 (Length: 627)
Name: NF5899-Insertion-4
Description: NF5899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5899-Insertion-4 |
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| [»] chr2 (4 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 518; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 8 - 627
Target Start/End: Original strand, 43417645 - 43418260
Alignment:
| Q |
8 |
cggtgtaggtgttttggctctggggattttggttagatgttcctcatatatacggatgctcgttgttctcaccttttaggtgttctgcatatatacggca |
107 |
Q |
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| T |
43417645 |
cggtgtaggtgttttggctctggggattttggttagaggttcctcatatatacggatgctcgttgttctcaccttttaggtgttctgcatatatacggca |
43417744 |
T |
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| Q |
108 |
cctttgtatttgtcttgtggtccaagttttcttgtgattctttcacatgcttggcttaataaattttgcttattcnnnnnnnnnnnnnnnnctatacacc |
207 |
Q |
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| T |
43417745 |
tctttgtatttgtcttgtggtccaagttttcttgtgattctttcacatgcttggcttaataaattttgcttattcaaaaaaaaaaaaa---ctatacacc |
43417841 |
T |
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| Q |
208 |
gacatcataacttttcttacgcaaacattcaatcatatctgtacaaatatctgtggttatatacactgcaagtgtatagtaactaaaaagcataacacaa |
307 |
Q |
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| T |
43417842 |
gacatcataacttttcttacgcaaacattcaatcatatctgtacaaatatctgtggttatatacactgcaagtgtctagtaactaaaaagcataacacaa |
43417941 |
T |
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| Q |
308 |
atttagaatctcaacatgttgaagtgatttcatgttcaatttaataccagaaaacattgtctacctgtctgcatctcctatttggaaaagcaaagaaaat |
407 |
Q |
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| T |
43417942 |
atttagaatctcaacatgttgaagtgatttcatgttcaatttaataccagaaaacattgtctacctgtctgcatctcctatttggaaaagcaaagaaaat |
43418041 |
T |
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| Q |
408 |
ctaataacactgaaagggacatgagtgatatgcatagtccatcagatggattacacgtcatagaattagctgctnnnnnnnngtatctctgtcccttcct |
507 |
Q |
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| T |
43418042 |
ctaataacactgaaagggacatgagtgatatgcatagtccatcggatggattacacgtcatagaattagctgct-aaaaaaagtatctctgtcccttcct |
43418140 |
T |
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| Q |
508 |
tttcttttcctcatcaagtaatatgctctgacacgaagcctgtgggaattgatgcattcatgcatggaggagttagttgaggctgctttctcactaacaa |
607 |
Q |
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| T |
43418141 |
tttcctttcctcatcaagtaatatgctctgacacgaagcctgtgggaattgatgcattcatgcatggaggagttagttgaggctgctttctcactaacaa |
43418240 |
T |
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| Q |
608 |
gtgacatttatgtgttattc |
627 |
Q |
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| T |
43418241 |
gtgacatttatgtgttattc |
43418260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 490 - 564
Target Start/End: Original strand, 43403515 - 43403590
Alignment:
| Q |
490 |
gtatctctgtcccttccttttcttttcctcatcaagtaatatgctctgacacgaag-cctgtgggaattgatgcat |
564 |
Q |
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| T |
43403515 |
gtatctctattctttccttttcctttcctcatcaagtaatatgctccgacacgaagccctgtaggaattgatgcat |
43403590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 43405369 - 43405443
Alignment:
| Q |
283 |
atagtaactaaaaagcataacacaaatttagaatctcaaca---tgttgaagtgatttcatgttcaatttaatac |
354 |
Q |
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| T |
43405369 |
atagtaactaaaaagcatagcacaaaattagaatctttacatgttgttgaagtgatttcatgttcaattttatac |
43405443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 579 - 627
Target Start/End: Original strand, 43406330 - 43406378
Alignment:
| Q |
579 |
gttagttgaggctgctttctcactaacaagtgacatttatgtgttattc |
627 |
Q |
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| T |
43406330 |
gttagtcgaggttgttttctcattcacaagtgacatttatgtgttattc |
43406378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 36820574 - 36820651
Alignment:
| Q |
98 |
atatacggcacctttgtatttgtcttgtggtccaagttttcttgtgattctttcacatgcttggcttaataaattttgc |
176 |
Q |
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| T |
36820574 |
atatacggcacctttgtatttctcttttggtccaagtttt-ttgtgttccttacacatgcgtggcgtaataaattttgc |
36820651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 84 - 176
Target Start/End: Original strand, 5757115 - 5757203
Alignment:
| Q |
84 |
taggtgttctgcatatatacggcacctttgtatttgtcttgtggtccaagttttcttgtgattctttcacatgcttggcttaataaattttgc |
176 |
Q |
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| T |
5757115 |
taggtgttccgcatatatacggcacctt-gtatttatcttgtgatcacagtttt---gtgtttcttacacatacttggcttaataaattttgc |
5757203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 177
Target Start/End: Complemental strand, 45993 - 45900
Alignment:
| Q |
84 |
taggtgttctgcatatatacggcacctttgtatttgtc--ttgtggtccaagttttcttgtgattctttcacatgcttggcttaataaattttgct |
177 |
Q |
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| T |
45993 |
taggtgttctgcatatatacggcacctttgtaatttccctttgtggtccaagttt--tggtgatggtttcactttcttggcttaataaattttgct |
45900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 10681951 - 10681878
Alignment:
| Q |
46 |
gttcctcatatatacggatgctcgttgttctcacctt-ttaggtgttctgcatatatacggcacctttgtattt |
118 |
Q |
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| T |
10681951 |
gttcctcatatatatggatttttggtgttcctaccttgttaggtgttccgcatatatacgacacctttgtattt |
10681878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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