View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5899-Insertion-5 (Length: 594)
Name: NF5899-Insertion-5
Description: NF5899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5899-Insertion-5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 8 - 594
Target Start/End: Complemental strand, 1223702 - 1223110
Alignment:
| Q |
8 |
gttatagcatagcagaatttgaaaaaatcgttattgttatgtgatttggtgattagtataaaatgttgtcggataggggcgggctaatgctgttgatcca |
107 |
Q |
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| T |
1223702 |
gttataacatagcagaatttgaaaaaatcgttattgttatgtgatatggtgattagtataaaatgttgtcggataggggcgggctaaaactgttgatcca |
1223603 |
T |
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| Q |
108 |
ccgtaattaggatcttggacccaccatagtgctaaaatgtagcggtgctattgttacatgatgcattatttcgagtgaaatgttgtcgaatagcagctat |
207 |
Q |
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| T |
1223602 |
ccgtaattaggatcttggacccaccatagcgctaaaatgtagtggtgctattgttacatgatgcattatttcgagtgaaatgttgtcgaatagcagctat |
1223503 |
T |
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| Q |
208 |
agaggcgcaatagcgtgtaatgtagtttgaacaaactattgttttttgtgatctgcgattgacaacacttgttattggattaatttcttgagtcggttgt |
307 |
Q |
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| T |
1223502 |
agaggcgcaatagcgtgtaatgtagtttgatcaaactattgttttttgtgatctgcgattgacaacacttgttattggattaatttcttgagtcggttgt |
1223403 |
T |
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| Q |
308 |
gcaacatcggtttcttttttacggagtagggctggcttaccttccaaatatgtgactctaggaatcaaattaagggcatcgagttggagcaactctttat |
407 |
Q |
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| T |
1223402 |
gcaacatcggtttcttttttacggagtagggctggc-taccttccaaatatgtgactctaggaatcaaattaagggcatcgtgttggggcaactctttat |
1223304 |
T |
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| Q |
408 |
gttggtgatt-------ttgatacttttctttctttatatatgatggaatgtaattgaatttgnnnnnnngtgcagctgaaatggtgagaagacaggctt |
500 |
Q |
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| T |
1223303 |
gttggtgattttgatacttgatacttttctttctttatatatgatggaatgtaattgaatttgtttttttgtgcagctgaaatggtgagaagacaggctt |
1223204 |
T |
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| Q |
501 |
tgtttccaggggattctgaattccagcagattctgaacatattcaagtatatcaaactcactttttaataccttttctgattcaagtatattgc |
594 |
Q |
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| T |
1223203 |
tgtttccaggggattctgaattccagcagcttctgaacatattcaagtatatcaaactcactttttaataccttttctgattcaagtatattgc |
1223110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 415132 - 415198
Alignment:
| Q |
10 |
tatagcatagcagaatttgaaaaaatcgttattgttatgtgatttggtgattagtataaaatgttgt |
76 |
Q |
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| T |
415132 |
tatagcatagcagaatttgaacaagtcgctattgtttcgtgatttgctatttagtacaaaatgttgt |
415198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 18841709 - 18841746
Alignment:
| Q |
8 |
gttatagcatagcagaatttgaaaaaatcgttattgtt |
45 |
Q |
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| T |
18841709 |
gttatagcataacagaatttgaaaaaatcgttgttgtt |
18841746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 25314106 - 25314062
Alignment:
| Q |
8 |
gttatagcatagcagaatttgaaaaaatcgttattgttatgtgat |
52 |
Q |
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| T |
25314106 |
gttatagcatagaggaatttgaacaaatcgttattgttctgtgat |
25314062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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