View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5899-Insertion-6 (Length: 477)
Name: NF5899-Insertion-6
Description: NF5899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5899-Insertion-6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 116 - 259
Target Start/End: Complemental strand, 17125544 - 17125401
Alignment:
| Q |
116 |
gcttacaataggatcaggagcatcttcttgtttgcacataatccatggtacgccagtatctaaacttacagccatttgagcaaaccatttggtataagct |
215 |
Q |
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| T |
17125544 |
gcttacaattggatcaggagcatcttcttgcttacacataacccatggaacaccagtgtttagtcctacagccatttgagaaaaccatttggtgtaagat |
17125445 |
T |
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| Q |
216 |
tttccaggagcaccaatttcccactccactggtccatactcatt |
259 |
Q |
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| T |
17125444 |
tttccaggtgcaccaatttcccattccactggtccatactcatt |
17125401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 269
Target Start/End: Original strand, 42989291 - 42989443
Alignment:
| Q |
117 |
cttacaataggatcaggagcatcttcttgtttgcacataatccatggtacgccagtatctaaacttacagccatttgagcaaaccatttggtataagctt |
216 |
Q |
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| T |
42989291 |
cttacaacaggatcaggagcatcatcttgcttgcacatgatccacggaactccggtaccaagtcctacagccatatctgctgcccatttggtgtaggatt |
42989390 |
T |
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| Q |
217 |
ttccaggagcaccaatttcccactccactggtccatactcattttctatctac |
269 |
Q |
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| T |
42989391 |
taccaggagcaccaatttcatactccataggtccatattcattttcaatctac |
42989443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 117 - 268
Target Start/End: Complemental strand, 5230477 - 5230326
Alignment:
| Q |
117 |
cttacaataggatcaggagcatcttcttgtttgcacataatccatggtacgccagtatctaaacttacagccatttgagcaaaccatttggtataagctt |
216 |
Q |
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| T |
5230477 |
cttacaacgggatcaggggcgtcttcttgcttgcacatgtcccaaggtacaccagtatctagacctacagccatttgagcagcccattttgtgtaagcct |
5230378 |
T |
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| Q |
217 |
ttccaggagcaccaatttcccactccactggtccatactcattttctatcta |
268 |
Q |
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| T |
5230377 |
ttccaggagcaccaatttcccattccacaggtccatactcattctcaatcta |
5230326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 417 - 477
Target Start/End: Original strand, 52549229 - 52549289
Alignment:
| Q |
417 |
ttaaaataggaatacaatcatacaaatatatttaaatcacatttccttgcctgagacagaa |
477 |
Q |
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| T |
52549229 |
ttaaaataggaatacaattatacaaatatatttaaatcacatttccttgcctgagacagaa |
52549289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 300 - 352
Target Start/End: Original strand, 52549112 - 52549164
Alignment:
| Q |
300 |
attatgatcattattgctgcaataatgtaattggccagcttaaacctttctag |
352 |
Q |
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| T |
52549112 |
attatgatcattattactgcaataatgtaattggccagcttaaacctttctag |
52549164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 117 - 267
Target Start/End: Complemental strand, 5451744 - 5451594
Alignment:
| Q |
117 |
cttacaataggatcaggagcatcttcttgtttgcacataatccatggtacgccagtatctaaacttacagccatttgagcaaaccatttggtataagctt |
216 |
Q |
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| T |
5451744 |
cttacaacaggatcaggagcatcatcttgtttgcacatgacccatggaaccccagtattaagtcctacagccatatgtgctgcccactgagtataggctt |
5451645 |
T |
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| Q |
217 |
ttccaggagcaccaatttcccactccactggtccatactcattttctatct |
267 |
Q |
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| T |
5451644 |
tagcaggagcaccaagttcatactccattggtccatattcattttcaatct |
5451594 |
T |
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