View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5899-Insertion-7 (Length: 387)
Name: NF5899-Insertion-7
Description: NF5899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5899-Insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 9 - 285
Target Start/End: Complemental strand, 18940990 - 18940715
Alignment:
| Q |
9 |
aatgattattggaaacattattaggggcacattactgcatgaagtgatatctcactaaacctatagaaccatgatctcggaaaattgttcaaaacaatgc |
108 |
Q |
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| T |
18940990 |
aatgattattggaaacattattaggggcacattactgcatgaagtgatatctcaacaaacctatagaaccatgatctcggaaaattgttcaaaacaatgc |
18940891 |
T |
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| Q |
109 |
attttaaatgcatatatgttcttttcaatatgagtagtggactagtggtttattaaggaactgtaaatataaggatatgcagattacattatctaggtca |
208 |
Q |
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| T |
18940890 |
attttaaatgcatatatgttcttttcgatatgagtagtggactagtgg-ttattaaggagctgtaaatataaggatatgcagattatattatctaggtca |
18940792 |
T |
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| Q |
209 |
cagacacgatacaactgatctagtatatgtggtaaaccgcgtggccaaatataagaagacaaaagtttaaattaatc |
285 |
Q |
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| T |
18940791 |
cagacacgatacaactgatctagtatatgtggtaaaccgcgtggccaaatataagaagacaaaagtttaaattaatc |
18940715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 349 - 387
Target Start/End: Complemental strand, 18940707 - 18940669
Alignment:
| Q |
349 |
tattaaatttaactcatgagaaaaaatttacaataattt |
387 |
Q |
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| T |
18940707 |
tattaaatttaactcatgagaaaaaatttacaataattt |
18940669 |
T |
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