View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5899-Insertion-8 (Length: 354)
Name: NF5899-Insertion-8
Description: NF5899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5899-Insertion-8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 7 - 354
Target Start/End: Complemental strand, 52999832 - 52999487
Alignment:
| Q |
7 |
aaagtttttattcaattatgattatagtcttatataaattctatttgttcccaacgttatagtgttcttcaactagtggttgacctgatctttagtttat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52999832 |
aaagtttttattcaattatgattatagtcttatataaattctatttgttctcaacgttatagtgttcttcaactagtggttgacctgatctttaggttat |
52999733 |
T |
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| Q |
107 |
ggtatatgattgactatcctgctctcacatgaacatgaacaatataaattgcttatttaatttaattttactattgaatttaagtgtgatattatgatta |
206 |
Q |
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| T |
52999732 |
ggtatatgattgactatcctgctctcacttgaacatgaacaatataaattgcttatttaatttaattttactattgaatttaagtgtgatattatgatta |
52999633 |
T |
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| Q |
207 |
tgaatcatctctaagggaagtaaaaagtatagcccttgttcagacacatatacaataacactataactttccactggttcatcacattttataatagaac |
306 |
Q |
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| T |
52999632 |
tgattcatctctaagggaagtaaaaagtatagccctttttgagacac--atacaataacactataactttccggtggttcatcacattttataatagaac |
52999535 |
T |
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| Q |
307 |
cattgtttatcaatgtcaggtcataactaatagaaatctaagttaatt |
354 |
Q |
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| T |
52999534 |
cattgtttatcaatgtcaggtcataactaatagaaatctaagttaatt |
52999487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 26779924 - 26780150
Alignment:
| Q |
8 |
aagtttttattcaattatgattatagtcttatataaattctatttgttcccaacgttatagtgttcttcaactagtggttgacctgatctttagtttatg |
107 |
Q |
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||||||||||||| ||||||| |||||| ||||||| ||| |||||||| |||||| | || | ||||||| || ||||||||||||| | | || | |
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| T |
26779924 |
aagtttttattcagttatgatcatagtcctatataatttcgatttgttctgaacgttgtgatgcttttcaacttgtagttgacctgatctctgggttcta |
26780023 |
T |
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| Q |
108 |
gtatatgattgactatcctgctctcacatgaacatgaacaatataaattgcttatttaatttaattttactattgaatttaagtgtgatattatgattat |
207 |
Q |
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| T |
26780024 |
gtataggattaagtatcttgctctcacttgaacaagagcaatagaaattgcttatttttttaaattaaattattgaatttaagtatgatattatgattat |
26780123 |
T |
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| Q |
208 |
gaatcatctctaagggaagtaaaaagt |
234 |
Q |
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| T |
26780124 |
gattcaattataggggaagtcaaaagt |
26780150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 7 - 209
Target Start/End: Original strand, 26775608 - 26775812
Alignment:
| Q |
7 |
aaagtttttattcaattatgattatagtcttatataaattctatttgttcccaacgttatagtgttcttcaactagtggttgacctgatctttagtttat |
106 |
Q |
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|||||||||||||| ||||||| |||||||||||||| ||| |||||||| |||| ||| || | ||||||| | ||||||| ||||| ||| || | |
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| T |
26775608 |
aaagtttttattcagttatgatcatagtcttatataatttcgatttgttctgaacgctatgatgcttttcaacttgcagttgaccagatctctaggttct |
26775707 |
T |
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| Q |
107 |
ggtatatgattgactatcctgctctcacatgaacatgaacaatataaattgcttat--ttaatttaattttactattgaatttaagtgtgatattatgat |
204 |
Q |
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|||||| |||||| |||| ||||||||| ||||| || ||||| ||||| ||||| || |||||||| | |||||||||||||| |||||||||||| |
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| T |
26775708 |
ggtataggattgagtatcttgctctcactcgaacaagagcaatagaaatttcttattatttttttaatttaattattgaatttaagtatgatattatgat |
26775807 |
T |
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| Q |
205 |
tatga |
209 |
Q |
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||||| |
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| T |
26775808 |
tatga |
26775812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 28195559 - 28195653
Alignment:
| Q |
7 |
aaagtttttattcaatt-atgattatagtcttatataaattctatttgttcccaacgttatagtgttcttcaactagtggttgacctgatcttta |
100 |
Q |
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||||||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||||||| |||| |||| |||||||||||||||||||||| |
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| T |
28195559 |
aaagtttttattcaatttatgatcatagtcttatataatttctacatgttcataacgttataatgtttttcatctagtggttgacctgatcttta |
28195653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 24846889 - 24846958
Alignment:
| Q |
59 |
aacgttatagtgttcttcaactagtggttgacctgatctttagtttatggtatatgattgactatcctgc |
128 |
Q |
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| T |
24846889 |
aacgctataatgtttttcaactagtggttgatctgatctctaggttacgatataagatagactatcctgc |
24846958 |
T |
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