View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5899_high_5 (Length: 254)

Name: NF5899_high_5
Description: NF5899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5899_high_5
NF5899_high_5
[»] chr8 (9 HSPs)
chr8 (32-136)||(43969928-43970031)
chr8 (32-83)||(515076-515127)
chr8 (32-83)||(9812347-9812398)
chr8 (38-88)||(12339892-12339942)
chr8 (32-82)||(15227744-15227794)
chr8 (32-89)||(33746061-33746118)
chr8 (33-97)||(22699574-22699638)
chr8 (32-83)||(6115932-6115983)
chr8 (32-88)||(15750252-15750308)
[»] chr1 (10 HSPs)
chr1 (32-88)||(44556990-44557046)
chr1 (32-88)||(2610757-2610813)
chr1 (32-83)||(29568070-29568121)
chr1 (32-87)||(8894937-8894992)
chr1 (32-83)||(26594995-26595046)
chr1 (37-93)||(7190972-7191028)
chr1 (32-87)||(18794464-18794519)
chr1 (32-95)||(27209539-27209602)
chr1 (32-85)||(8989563-8989616)
chr1 (38-87)||(14373345-14373394)
[»] chr7 (6 HSPs)
chr7 (32-87)||(4268906-4268961)
chr7 (32-87)||(28289389-28289444)
chr7 (32-85)||(30312709-30312762)
chr7 (38-87)||(42286078-42286127)
chr7 (32-83)||(37490961-37491012)
chr7 (38-88)||(48843735-48843785)
[»] chr4 (9 HSPs)
chr4 (32-87)||(44061168-44061223)
chr4 (32-87)||(6991190-6991245)
chr4 (32-83)||(47817913-47817964)
chr4 (38-88)||(26934402-26934450)
chr4 (32-88)||(41496379-41496435)
chr4 (32-83)||(19451136-19451187)
chr4 (32-87)||(34413474-34413529)
chr4 (35-87)||(45839814-45839864)
chr4 (35-87)||(24157299-24157351)
[»] chr5 (10 HSPs)
chr5 (34-87)||(7721264-7721317)
chr5 (32-87)||(13974448-13974503)
chr5 (32-87)||(21634285-21634340)
chr5 (32-87)||(21642532-21642587)
chr5 (32-83)||(1309286-1309337)
chr5 (32-83)||(14161827-14161879)
chr5 (1-87)||(27557744-27557830)
chr5 (32-83)||(4911037-4911088)
chr5 (32-83)||(11977762-11977813)
chr5 (32-95)||(7736548-7736612)
[»] chr6 (7 HSPs)
chr6 (32-83)||(20226148-20226199)
chr6 (32-83)||(22120132-22120183)
chr6 (35-83)||(21271330-21271378)
chr6 (32-83)||(13011275-13011326)
chr6 (32-83)||(13503771-13503822)
chr6 (37-87)||(3988668-3988718)
chr6 (34-83)||(32193985-32194034)
[»] chr3 (11 HSPs)
chr3 (32-83)||(36844667-36844718)
chr3 (33-93)||(7230809-7230869)
chr3 (32-87)||(31190650-31190705)
chr3 (32-82)||(40717298-40717348)
chr3 (32-95)||(11017006-11017070)
chr3 (32-87)||(27067775-27067828)
chr3 (32-83)||(30315484-30315535)
chr3 (32-87)||(47823339-47823394)
chr3 (32-87)||(48901881-48901936)
chr3 (38-88)||(11337542-11337592)
chr3 (42-95)||(4759464-4759517)
[»] chr2 (8 HSPs)
chr2 (32-87)||(12565394-12565449)
chr2 (32-95)||(29412158-29412221)
chr2 (33-83)||(43971951-43972001)
chr2 (1-87)||(8540182-8540268)
chr2 (40-95)||(45423790-45423845)
chr2 (33-83)||(11188177-11188227)
chr2 (38-83)||(681694-681739)
chr2 (38-87)||(35799396-35799445)
[»] scaffold0300 (1 HSPs)
scaffold0300 (34-87)||(4739-4792)
[»] scaffold0136 (1 HSPs)
scaffold0136 (32-77)||(9716-9761)


Alignment Details
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 43970031 - 43969928
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaattgagggattgctgtttatgaaaatacagacaatgagacaaatg 131  Q
    ||||||||||||||||| |||| ||| ||||| |||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  43970031 aattaatgcatttcttagtatgtgtataaaaatcttaaacggcattcattttaaaattga-ggattactgtttatgaaaatacagacaatgagacaaatg 43969933  T
Q  132 ttagc 136  Q
    |||||    
T  43969932 ttagc 43969928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 515076 - 515127
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcatttt 83  Q
    ||||||| |||||||||||||| ||| |||||||||||| ||||||||||||    
T  515076 aattaatacatttcttaatatgtgtataaaaaccttaaatgacattcatttt 515127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 9812347 - 9812398
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcatttt 83  Q
    ||||| |||||||||||||||| ||| |||||||||||||| ||||||||||    
T  9812347 aattagtgcatttcttaatatgtgtataaaaaccttaaacggcattcatttt 9812398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 12339892 - 12339942
Alignment:
Q  38 tgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaat 88  Q
    |||||||||||||||| ||  ||||||||||||||||||||||||| ||||    
T  12339892 tgcatttcttaatatgtgtgtaaaaaccttaaacgacattcattttgaaat 12339942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 15227744 - 15227794
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattt 82  Q
    |||||||||||||||||||||| ||  ||||| ||||||||||||||||||    
T  15227744 aattaatgcatttcttaatatgcgtgtaaaaatcttaaacgacattcattt 15227794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 33746118 - 33746061
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaatt 89  Q
    ||||||||||||| |||||||| ||  |||||||||||| |||||||||||| |||||    
T  33746118 aattaatgcattttttaatatgcgtgtaaaaaccttaaatgacattcattttgaaatt 33746061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 22699574 - 22699638
Alignment:
Q  33 attaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaattgagggatt 97  Q
    |||| |||||||||||||||| || ||| |||||||||||||| ||||||| |||  ||||||||    
T  22699574 attattgcatttcttaatatgtgtggaacaaccttaaacgacactcattttgaaacggagggatt 22699638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 6115983 - 6115932
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcatttt 83  Q
    ||||||||||||| |||||||| ||  ||||||||||||||||| |||||||    
T  6115983 aattaatgcattttttaatatgtgtgtaaaaaccttaaacgacactcatttt 6115932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 15750308 - 15750252
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaat 88  Q
    |||||||| ||||||||||||| ||  ||||||  ||||||||||||||||| ||||    
T  15750308 aattaatgtatttcttaatatgtgtgtaaaaactataaacgacattcattttgaaat 15750252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 44557046 - 44556990
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaat 88  Q
    ||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||    
T  44557046 aattaatgcattttttaatatgtgtataaaaaccttaaacgacattcattttaaaat 44556990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 2610813 - 2610757
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaat 88  Q
    |||||||| ||||||||||||| ||| |||||| |||||||||||||||||||||||    
T  2610813 aattaatgaatttcttaatatgtgtataaaaactttaaacgacattcattttaaaat 2610757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 29568070 - 29568121
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcatttt 83  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||||||||    
T  29568070 aattaatgcatttcttaatatgtgtgtaaaaaccttaaacgacattcatttt 29568121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 8894992 - 8894937
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaa 87  Q
    ||||||||||||||||||||||  || ||||| ||||||||||| |||||||||||    
T  8894992 aattaatgcatttcttaatatgtatataaaaatcttaaacgacactcattttaaaa 8894937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 26595046 - 26594995
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcatttt 83  Q
    |||||||| ||||||||||||| ||  |||||||||||||||||||||||||    
T  26595046 aattaatgtatttcttaatatgtgtgtaaaaaccttaaacgacattcatttt 26594995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 7191028 - 7190972
Alignment:
Q  37 atgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaattgagg 93  Q
    ||||||||||||||||| ||  |||||| ||| ||||||||||||||||||| ||||    
T  7191028 atgcatttcttaatatgtgtgtaaaaacattagacgacattcattttaaaatagagg 7190972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 18794519 - 18794464
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaa 87  Q
    ||||||||||||| |||||||| ||  |||||  ||||||||||||||||||||||    
T  18794519 aattaatgcatttattaatatgtgtgtaaaaatattaaacgacattcattttaaaa 18794464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 27209539 - 27209602
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaattgaggga 95  Q
    ||||||||||||| |||||||| ||  ||||||||||||| ||| ||||||| |||| ||||||    
T  27209539 aattaatgcattttttaatatgtgtgtaaaaaccttaaacaacactcattttgaaatggaggga 27209602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 8989616 - 8989563
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaa 85  Q
    |||||||||||||||||||||| ||  |||||| |||| ||||||| |||||||    
T  8989616 aattaatgcatttcttaatatgtgtgtaaaaactttaatcgacatttattttaa 8989563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 14373394 - 14373345
Alignment:
Q  38 tgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaa 87  Q
    |||||||||||||||| ||  ||| |||| ||||||||||||||||||||    
T  14373394 tgcatttcttaatatgtgtgtaaacacctaaaacgacattcattttaaaa 14373345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 4268906 - 4268961
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaa 87  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||||||||||||    
T  4268906 aattaatgcatttcttaatatgtgtgtaaaaaccttaaacgacattcattttaaaa 4268961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 28289389 - 28289444
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaa 87  Q
    |||||||| |||| |||||||| ||  |||||||||||||||||||||||||||||    
T  28289389 aattaatgtatttattaatatgtgtgtaaaaaccttaaacgacattcattttaaaa 28289444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 30312709 - 30312762
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaa 85  Q
    ||||||||||||| |||||||  ||  |||||||||||||||||||||||||||    
T  30312709 aattaatgcattttttaatatatgtgtaaaaaccttaaacgacattcattttaa 30312762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 42286078 - 42286127
Alignment:
Q  38 tgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaa 87  Q
    ||||||||||||||||  |  |||||||||||||||||||||||||||||    
T  42286078 tgcatttcttaatatgtttgtaaaaaccttaaacgacattcattttaaaa 42286127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 37490961 - 37491012
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcatttt 83  Q
    ||||||| |||||||||||||| ||  ||||||||||||||||||| |||||    
T  37490961 aattaattcatttcttaatatgtgtgtaaaaaccttaaacgacatttatttt 37491012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 48843735 - 48843785
Alignment:
Q  38 tgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaat 88  Q
    ||||||||||||||||  |  ||||||||||||||||| ||||||||||||    
T  48843735 tgcatttcttaatatgtatgtaaaaaccttaaacgacactcattttaaaat 48843785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 44061168 - 44061223
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaa 87  Q
    |||||||||||||||||||| | ||| |||||||||||||||||||||||||||||    
T  44061168 aattaatgcatttcttaatacgtgtataaaaaccttaaacgacattcattttaaaa 44061223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 6991245 - 6991190
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaa 87  Q
    |||||||||||||||||||||| ||| ||||||||| ||||| |||||||||||||    
T  6991245 aattaatgcatttcttaatatgtgtataaaaaccttgaacgaaattcattttaaaa 6991190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 47817913 - 47817964
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcatttt 83  Q
    |||||||||||||||||||||| ||| ||||| |||||||||||||||||||    
T  47817913 aattaatgcatttcttaatatgtgtataaaaaacttaaacgacattcatttt 47817964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 26934450 - 26934402
Alignment:
Q  38 tgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaat 88  Q
    |||||||||||||||| ||||||||  ||||||||||||||||||||||||    
T  26934450 tgcatttcttaatatgtgtagaaaa--cttaaacgacattcattttaaaat 26934402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 41496379 - 41496435
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaat 88  Q
    ||||||| ||||| |||||||| ||  ||||||||||||||| ||||||||||||||    
T  41496379 aattaatacattttttaatatgtgtgtaaaaaccttaaacgatattcattttaaaat 41496435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 19451187 - 19451136
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcatttt 83  Q
    |||||||||||||||||||||| ||  |||||| |||||| |||||||||||    
T  19451187 aattaatgcatttcttaatatgtgtgtaaaaactttaaacaacattcatttt 19451136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 34413529 - 34413474
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaa 87  Q
    |||||| |||||||||||| || ||| |||||| ||||||||| ||||||||||||    
T  34413529 aattaacgcatttcttaatttgtgtataaaaacattaaacgacgttcattttaaaa 34413474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 45839814 - 45839864
Alignment:
Q  35 taatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaa 87  Q
    |||||||||||||||| || |||  ||||| ||||||||||||||||||||||    
T  45839814 taatgcatttcttaatttgtgta--aaaactttaaacgacattcattttaaaa 45839864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 24157299 - 24157351
Alignment:
Q  35 taatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaa 87  Q
    ||||||| || |||||||| ||  |||||| ||||||||||||||||||||||    
T  24157299 taatgcactttttaatatgtgtgtaaaaactttaaacgacattcattttaaaa 24157351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 7721264 - 7721317
Alignment:
Q  34 ttaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaa 87  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||||||||||||    
T  7721264 ttaatgcatttattaatatgtgtataaaaaccttaaacgacattcattttaaaa 7721317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 13974448 - 13974503
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaa 87  Q
    |||||||||||||||||||||| ||  ||||| |||||||||||||||||||||||    
T  13974448 aattaatgcatttcttaatatgtgtgtaaaaatcttaaacgacattcattttaaaa 13974503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 21634285 - 21634340
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaa 87  Q
    |||||||||||||||||||||| ||  |||||| ||||||||||||||||||||||    
T  21634285 aattaatgcatttcttaatatgtgtgtaaaaactttaaacgacattcattttaaaa 21634340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 21642532 - 21642587
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaa 87  Q
    |||||||||||||||||||||| ||  |||||| ||||||||||||||||||||||    
T  21642532 aattaatgcatttcttaatatgtgtgtaaaaactttaaacgacattcattttaaaa 21642587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 1309337 - 1309286
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcatttt 83  Q
    |||||||||||||||||||||| ||  |||||||||||| ||||||||||||    
T  1309337 aattaatgcatttcttaatatgtgtgtaaaaaccttaaatgacattcatttt 1309286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 14161879 - 14161827
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaa-ccttaaacgacattcatttt 83  Q
    |||||||||||||||||||||| ||  ||||| ||||||||||||||||||||    
T  14161879 aattaatgcatttcttaatatgtgtgcaaaaaaccttaaacgacattcatttt 14161827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 27557830 - 27557744
Alignment:
Q  1 aatttgataaaataacatctcnnnnnnnnnnaattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaa 87  Q
    |||||||||||||||||||||          |||||||| ||||||||||||| ||| |||| | |||||||||||| |||||||||    
T  27557830 aatttgataaaataacatctcttattcttttaattaatgtatttcttaatatgtgtataaaatctttaaacgacatttattttaaaa 27557744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 4911088 - 4911037
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcatttt 83  Q
    |||||||| ||||||||||||| ||  |||||||||||| ||||||||||||    
T  4911088 aattaatgtatttcttaatatgtgtgtaaaaaccttaaatgacattcatttt 4911037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 11977762 - 11977813
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcatttt 83  Q
    |||||||||||||||||||||| ||  ||||| ||||||||||| |||||||    
T  11977762 aattaatgcatttcttaatatgtgtgtaaaaagcttaaacgacactcatttt 11977813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 7736548 - 7736612
Alignment:
Q  32 aattaatgcatttctt-aatatgggtagaaaaaccttaaacgacattcattttaaaattgaggga 95  Q
    ||||||||||||| || |||||| ||  ||||| ||||||||||||||||||| |||| ||||||    
T  7736548 aattaatgcatttttttaatatgtgtgtaaaaatcttaaacgacattcattttgaaatggaggga 7736612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 20226199 - 20226148
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcatttt 83  Q
    |||||||||||||||||||||  || ||||||||||||||||||||||||||    
T  20226199 aattaatgcatttcttaatatatgtggaaaaaccttaaacgacattcatttt 20226148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 22120183 - 22120132
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcatttt 83  Q
    |||||||||||||||||||||  || ||||||||||||||||||||||||||    
T  22120183 aattaatgcatttcttaatatatgtggaaaaaccttaaacgacattcatttt 22120132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 21271378 - 21271330
Alignment:
Q  35 taatgcatttcttaatatgggtagaaaaaccttaaacgacattcatttt 83  Q
    ||||||||||||||||||| ||  |||||||||||||||||||||||||    
T  21271378 taatgcatttcttaatatgtgtgtaaaaaccttaaacgacattcatttt 21271330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 13011326 - 13011275
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcatttt 83  Q
    |||||||||||||||||||||| ||  ||||| |||||||||| ||||||||    
T  13011326 aattaatgcatttcttaatatgtgtgtaaaaatcttaaacgacgttcatttt 13011275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 13503822 - 13503771
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcatttt 83  Q
    |||||||||||||||||||||| ||  ||||| ||||||||||||| |||||    
T  13503822 aattaatgcatttcttaatatgtgtgtaaaaatcttaaacgacatttatttt 13503771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 3988718 - 3988668
Alignment:
Q  37 atgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaa 87  Q
    |||||||||| |||||| ||  ||||| |||||||||||||||||||||||    
T  3988718 atgcatttctcaatatgtgtgtaaaaatcttaaacgacattcattttaaaa 3988668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 32193985 - 32194034
Alignment:
Q  34 ttaatgcatttcttaatatgggtagaaaaaccttaaacgacattcatttt 83  Q
    ||||| |||||||||||||  ||  |||||||||||||||||||||||||    
T  32193985 ttaatacatttcttaatatatgtgtaaaaaccttaaacgacattcatttt 32194034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 36844718 - 36844667
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcatttt 83  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||||||||    
T  36844718 aattaatgcatttcttaatatgtgtctaaaaaccttaaacgacattcatttt 36844667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 7230869 - 7230809
Alignment:
Q  33 attaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaattgagg 93  Q
    |||||| |||||||||||||| ||  ||||| |||||||||||||||||||||||| ||||    
T  7230869 attaattcatttcttaatatgtgtgtaaaaatcttaaacgacattcattttaaaatagagg 7230809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 31190650 - 31190705
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaa 87  Q
    ||||||| ||||||||||||||  |  |||||||||||||||||||||||||||||    
T  31190650 aattaatacatttcttaatatgtatgtaaaaaccttaaacgacattcattttaaaa 31190705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 40717348 - 40717298
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattt 82  Q
    |||||||||||||||||||||| ||  |||||||||||||||| |||||||    
T  40717348 aattaatgcatttcttaatatgtgtgtaaaaaccttaaacgacgttcattt 40717298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 11017070 - 11017006
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaacc-ttaaacgacattcattttaaaattgaggga 95  Q
    ||||||||||||| ||||||||  |||||||| | ||||| ||||||||||||||||| ||||||    
T  11017070 aattaatgcatttattaatatgtatagaaaaaacattaaaagacattcattttaaaatggaggga 11017006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 27067775 - 27067828
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaa 87  Q
    ||||||||||||||||||| || |||  |||||||||||||||| |||||||||||    
T  27067775 aattaatgcatttcttaatgtgtgta--aaaaccttaaacgacactcattttaaaa 27067828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 30315484 - 30315535
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcatttt 83  Q
    |||||||||||||||||||||| ||  || | ||||||||||||||||||||    
T  30315484 aattaatgcatttcttaatatgtgtgtaacagccttaaacgacattcatttt 30315535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 47823394 - 47823339
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaa 87  Q
    ||||||| ||||| |||||||| ||| ||||||||||||| || ||||||||||||    
T  47823394 aattaatacattttttaatatgtgtataaaaaccttaaacaacgttcattttaaaa 47823339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 48901881 - 48901936
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaa 87  Q
    ||||||||||||||||||||||  |  ||||| ||||||||||| |||||||||||    
T  48901881 aattaatgcatttcttaatatgtatgtaaaaaacttaaacgacactcattttaaaa 48901936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 11337592 - 11337542
Alignment:
Q  38 tgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaat 88  Q
    |||||||| ||||||| ||  ||||||||||||||||||||||||| ||||    
T  11337592 tgcatttcataatatgtgtgtaaaaaccttaaacgacattcattttgaaat 11337542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 4759464 - 4759517
Alignment:
Q  42 tttcttaatatgggtagaaaaaccttaaacgacattcattttaaaattgaggga 95  Q
    |||||||||||| ||| ||| |||| |||||||| |||||||||||| ||||||    
T  4759464 tttcttaatatgtgtataaacacctaaaacgacactcattttaaaatggaggga 4759517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 12565449 - 12565394
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaa 87  Q
    |||||| |||||| |||||||| ||  |||||||||||||||||||||||||||||    
T  12565449 aattaacgcatttattaatatgtgtgtaaaaaccttaaacgacattcattttaaaa 12565394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 29412158 - 29412221
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaattgaggga 95  Q
    |||||||||||||||||||||  ||  ||||||||||||||||||| ||||| |||| ||||||    
T  29412158 aattaatgcatttcttaatatacgtgtaaaaaccttaaacgacattaattttgaaatggaggga 29412221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 43971951 - 43972001
Alignment:
Q  33 attaatgcatttcttaatatgggtagaaaaaccttaaacgacattcatttt 83  Q
    ||||||||||||||||||||| ||  |||||||||| ||||||||||||||    
T  43971951 attaatgcatttcttaatatgtgtgtaaaaaccttagacgacattcatttt 43972001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 8540182 - 8540268
Alignment:
Q  1 aatttgataaaataacatctcnnnnnnnnnnaattaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaa 87  Q
    |||||||||||||||||||||          |||||||||||||||||||||| ||  ||||| ||||||| | |||||||||||||    
T  8540182 aatttgataaaataacatctctttttcttttaattaatgcatttcttaatatgtgtgtaaaaatcttaaactatattcattttaaaa 8540268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 45423790 - 45423845
Alignment:
Q  40 catttcttaatatgggtagaaaaaccttaaacgacattcattttaaaattgaggga 95  Q
    |||||||||||||| ||  |||||  ||||||||||||||||||||||| ||||||    
T  45423790 catttcttaatatgtgtgtaaaaattttaaacgacattcattttaaaatggaggga 45423845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 11188227 - 11188177
Alignment:
Q  33 attaatgcatttcttaatatgggtagaaaaaccttaaacgacattcatttt 83  Q
    |||||||||||| |||||||| ||  || ||||||||||||||||||||||    
T  11188227 attaatgcatttattaatatgtgtgtaagaaccttaaacgacattcatttt 11188177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 681739 - 681694
Alignment:
Q  38 tgcatttcttaatatgggtagaaaaaccttaaacgacattcatttt 83  Q
    |||||||||||||||| ||  ||||||||||||||||| |||||||    
T  681739 tgcatttcttaatatgtgtgcaaaaaccttaaacgacactcatttt 681694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 35799396 - 35799445
Alignment:
Q  38 tgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaa 87  Q
    |||||||||||||||| ||  ||| |||| ||||||||||||||||||||    
T  35799396 tgcatttcttaatatgtgtgtaaacacctaaaacgacattcattttaaaa 35799445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 4739 - 4792
Alignment:
Q  34 ttaatgcatttcttaatatgggtagaaaaaccttaaacgacattcattttaaaa 87  Q
    |||||||||||||||||||| ||  |||||  |||||||||||| |||||||||    
T  4739 ttaatgcatttcttaatatgtgtgtaaaaattttaaacgacatttattttaaaa 4792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 9716 - 9761
Alignment:
Q  32 aattaatgcatttcttaatatgggtagaaaaaccttaaacgacatt 77  Q
    |||||||| ||||||||||||| ||  |||||||||||||||||||    
T  9716 aattaatgtatttcttaatatgtgtgcaaaaaccttaaacgacatt 9761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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