View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5899_high_8 (Length: 251)
Name: NF5899_high_8
Description: NF5899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5899_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 77 - 231
Target Start/End: Original strand, 37169057 - 37169211
Alignment:
| Q |
77 |
cattcatcacccgcaccaccagaaacctccctcatccataatccaactttctatttccaacacccattctggtctcaaaccaatttctgttatgtcattg |
176 |
Q |
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| T |
37169057 |
cattcatcacccgcaccaccagaaacctccctcatccataatccaactttccatttccaacacccattctgatctcaaaccaatttctgttatgtcattg |
37169156 |
T |
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| Q |
177 |
tatctacagtggtcctgtcaaaacgtgccacttgtgcggccatgcacgaatagac |
231 |
Q |
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| T |
37169157 |
tatctacagtgatcctgtcaaaacgtgccacttgtgcggccatgcacgaatagac |
37169211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 37168909 - 37168985
Alignment:
| Q |
1 |
ataggattttgatttgttgttgtagaaaagacggtccaaattacacatcaagtttaatatagttaaatgatcttaac |
77 |
Q |
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| T |
37168909 |
ataggattttgatttgttgttgtagaaaagacggtccaaattacacatcaagtttaatatagttaaatgatcttaac |
37168985 |
T |
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