View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5899_low_11 (Length: 243)

Name: NF5899_low_11
Description: NF5899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5899_low_11
NF5899_low_11
[»] chr2 (14 HSPs)
chr2 (1-225)||(34468286-34468501)
chr2 (5-225)||(18556199-18556410)
chr2 (10-67)||(26404871-26404928)
chr2 (9-67)||(32603189-32603247)
chr2 (9-70)||(12915638-12915697)
chr2 (19-64)||(45468304-45468349)
chr2 (15-64)||(45701337-45701386)
chr2 (9-69)||(3202588-3202648)
chr2 (9-69)||(22858812-22858872)
chr2 (7-71)||(28543646-28543710)
chr2 (10-73)||(30515922-30515985)
chr2 (11-65)||(33006835-33006889)
chr2 (134-223)||(45468410-45468499)
chr2 (24-64)||(3376012-3376052)
[»] chr6 (11 HSPs)
chr6 (1-225)||(20210001-20210216)
chr6 (1-225)||(22104024-22104239)
chr6 (11-76)||(29361519-29361584)
chr6 (9-64)||(31848193-31848248)
chr6 (9-73)||(5195424-5195488)
chr6 (9-67)||(14782127-14782185)
chr6 (134-223)||(4103336-4103425)
chr6 (19-62)||(5675649-5675692)
chr6 (9-90)||(4103220-4103301)
chr6 (11-64)||(9756363-9756416)
chr6 (143-223)||(5195283-5195363)
[»] chr1 (10 HSPs)
chr1 (12-225)||(1870213-1870417)
chr1 (1-225)||(16632401-16632616)
chr1 (7-222)||(34504964-34505171)
chr1 (3-67)||(12527077-12527141)
chr1 (9-85)||(33567292-33567368)
chr1 (10-69)||(8303898-8303957)
chr1 (120-186)||(24308520-24308586)
chr1 (24-64)||(24509475-24509515)
chr1 (9-67)||(16423340-16423398)
chr1 (24-64)||(20819764-20819804)
[»] chr7 (12 HSPs)
chr7 (10-85)||(43655980-43656055)
chr7 (7-64)||(13780929-13780986)
chr7 (9-94)||(17263245-17263330)
chr7 (24-72)||(22681606-22681654)
chr7 (9-90)||(22358830-22358911)
chr7 (24-64)||(6458974-6459014)
chr7 (9-77)||(38651158-38651226)
chr7 (9-64)||(47809299-47809354)
chr7 (19-57)||(7567105-7567143)
chr7 (24-65)||(14241176-14241217)
chr7 (9-73)||(644888-644952)
chr7 (9-69)||(40451971-40452031)
[»] chr4 (13 HSPs)
chr4 (9-94)||(37014055-37014140)
chr4 (1-88)||(30036482-30036566)
chr4 (9-90)||(135988-136069)
chr4 (9-64)||(22322556-22322611)
chr4 (15-73)||(9013525-9013583)
chr4 (10-66)||(2632897-2632953)
chr4 (24-64)||(17186149-17186189)
chr4 (145-225)||(30036354-30036434)
chr4 (28-66)||(1463212-1463250)
chr4 (24-65)||(39868202-39868243)
chr4 (9-66)||(46191337-46191394)
chr4 (143-223)||(2633021-2633101)
chr4 (9-77)||(52762793-52762861)
[»] scaffold0074 (2 HSPs)
scaffold0074 (4-67)||(36180-36243)
scaffold0074 (134-223)||(36301-36390)
[»] chr5 (9 HSPs)
chr5 (9-67)||(23257042-23257100)
chr5 (11-66)||(24251171-24251226)
chr5 (24-72)||(26397450-26397498)
chr5 (9-90)||(12824483-12824563)
chr5 (9-90)||(12851547-12851627)
chr5 (19-90)||(9194690-9194761)
chr5 (9-67)||(1585345-1585403)
chr5 (135-223)||(9194797-9194885)
chr5 (24-64)||(40632806-40632846)
[»] chr8 (2 HSPs)
chr8 (9-73)||(15353222-15353286)
chr8 (9-67)||(15172686-15172744)
[»] chr3 (4 HSPs)
chr3 (10-64)||(19667625-19667679)
chr3 (9-90)||(31644096-31644177)
chr3 (9-64)||(7937340-7937396)
chr3 (9-70)||(7639031-7639092)
[»] scaffold0461 (2 HSPs)
scaffold0461 (10-66)||(2081-2137)
scaffold0461 (10-66)||(9017-9073)
[»] scaffold1251 (1 HSPs)
scaffold1251 (24-64)||(1226-1266)
[»] scaffold0334 (2 HSPs)
scaffold0334 (132-215)||(2790-2873)
scaffold0334 (11-69)||(2927-2985)


Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 34468286 - 34468501
Alignment:
Q  1 acaaacacaattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaaggcacataattcgacgaaaaccaaaaacc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||| | ||| |||      
T  34468286 acaaacacaattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaactaaaagctaaaggaacagaattcgacgatagccataaa-- 34468383  T
Q  101 aaaagctaaagcagaccgtttcaacttgtccaaaatattatgaggatcgattaccgtacttttgaagatacaattgtttctatcctaccatatcacccaa 200  Q
           |||||||||| |||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||    
T  34468384 -------aaagcagaccatttcactttgtccaaaatattatgaggatcgattactgtacttttgaagatacaattgtttctatccttccatattacccaa 34468476  T
Q  201 atagaagcaagccatataaccttta 225  Q
    |||||||||||||||||||||||||    
T  34468477 atagaagcaagccatataaccttta 34468501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 18556199 - 18556410
Alignment:
Q  5 acacaattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaaggcacataattcgacgaaaaccaaaaaccaaaa 104  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||| |||||| ||| | |||||||| | ||| |||          
T  18556199 acacaattacatgacaccaatacaaagtagtgggagtctccaccagtcatgaaaactaaaagttaaaggaacaaagttcgacgatagccataaa------ 18556292  T
Q  105 gctaaagcagaccgtttcaacttgtccaaaatattatgaggatcgattaccgtacttttgaagatacaattgtttctatcctaccatatcacccaaatag 204  Q
       |||| || |||||||| |||||| |||||| ||||||||||||||||| || ||||||||||||||||||||||||||| |||||| ||||||||||    
T  18556293 ---aaagaagtccgtttcaccttgtcgaaaatactatgaggatcgattaccatatttttgaagatacaattgtttctatccttccatattacccaaatag 18556389  T
Q  205 aagcaagccatataaccttta 225  Q
    |||||||||| ||||||||||    
T  18556390 aagcaagccagataaccttta 18556410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 26404928 - 26404871
Alignment:
Q  10 attacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagc 67  Q
    ||||||||||| | ||||| |||||||||||||||||||| |||||||||||||||||    
T  26404928 attacatgacatccatacagagaagtgggtgtctccaccaatcatgaaaaccaaaagc 26404871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 32603247 - 32603189
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagc 67  Q
    |||||||||||||| |||||||| |  |||||||||||||| ||||||||| |||||||    
T  32603247 aattacatgacacccatacaaaggatggggtgtctccaccaatcatgaaaatcaaaagc 32603189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 12915697 - 12915638
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaa 70  Q
    ||||||| ||||||| ||||||||||||  ||||||||||| ||||||||||||||||||||    
T  12915697 aattacacgacacca-tacaaagaagtga-tgtctccaccaatcatgaaaaccaaaagctaa 12915638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 45468304 - 45468349
Alignment:
Q  19 caccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaa 64  Q
    |||| ||||||||||||||||| |||||||| ||||||||||||||    
T  45468304 cacctatacaaagaagtgggtgcctccaccaatcatgaaaaccaaa 45468349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 45701337 - 45701386
Alignment:
Q  15 atgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaa 64  Q
    |||||||| ||||||||||||||||| | |||||| ||||||||||||||    
T  45701337 atgacacctatacaaagaagtgggtgcccccaccaatcatgaaaaccaaa 45701386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 3202648 - 3202588
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagcta 69  Q
    |||||||||||| | ||| ||||||||||||| |||||||| || ||||||| ||||||||    
T  3202648 aattacatgacatccatataaagaagtgggtgcctccaccaatcctgaaaactaaaagcta 3202588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 22858812 - 22858872
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagcta 69  Q
    ||||||||||||   ||| |||| | ||||||||||||||| |||||||||||||||||||    
T  22858812 aattacatgacattcatataaagtaatgggtgtctccaccaatcatgaaaaccaaaagcta 22858872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 28543710 - 28543646
Alignment:
Q  7 acaattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaa 71  Q
    |||||||||||||||| |||||||| |||||||||  ||||| || |||| ||| ||||||||||    
T  28543710 acaattacatgacacctatacaaaggagtgggtgttgccacccgttatgataacaaaaagctaaa 28543646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 30515922 - 30515985
Alignment:
Q  10 attacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaagg 73  Q
    ||||||||||| | ||||||||||||| || ||||||||| || ||||||||||| | ||||||    
T  30515922 attacatgacatccatacaaagaagtgagtatctccaccaatcgtgaaaaccaaacgataaagg 30515985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 33006835 - 33006889
Alignment:
Q  11 ttacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaa 65  Q
    ||||||| |||| |||||||| ||||| ||||||||||| || ||||||||||||    
T  33006835 ttacatgccacccatacaaaggagtggatgtctccaccaatcgtgaaaaccaaaa 33006889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 223
Target Start/End: Original strand, 45468410 - 45468499
Alignment:
Q  134 aatattatgaggatcgattaccgtacttttgaagatacaattgtttctatcctaccatatcacccaaatagaagcaagccatataacctt 223  Q
    |||||| | |||||| ||||||| | |||| ||||||||||| ||||| |||| ||||||  |||| | | |||||||||| ||||||||    
T  45468410 aatattgtaaggatcaattaccgcattttttaagatacaattatttctctccttccatattgcccatacacaagcaagccaaataacctt 45468499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 3376052 - 3376012
Alignment:
Q  24 atacaaagaagtgggtgtctccaccagtcatgaaaaccaaa 64  Q
    |||||||||||| |||| |||||||| ||||||||||||||    
T  3376052 atacaaagaagttggtgcctccaccaatcatgaaaaccaaa 3376012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 20210216 - 20210001
Alignment:
Q  1 acaaacacaattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaaggcacataattcgacgaaaaccaaaaacc 100  Q
    |||||||||||||||||||| | || ||||||||||||||| ||||||| |||||||| | |||||||||||  | | |||||||||| | ||| |||      
T  20210216 acaaacacaattacatgacatccattcaaagaagtgggtgtttccaccaatcatgaaagctaaaagctaaagaaatagaattcgacgatagccataaa-- 20210119  T
Q  101 aaaagctaaagcagaccgtttcaacttgtccaaaatattatgaggatcgattaccgtacttttgaagatacaattgtttctatcctaccatatcacccaa 200  Q
           |||| |||||||||||  |||||||| ||| || |||||||||||||| || ||||||||||||  || |||||||||| |||||| || |||    
T  20210118 -------aaagaagaccgtttcacgttgtccaacatactaagaggatcgattaccatatttttgaagatacggttatttctatccttccatattacacaa 20210026  T
Q  201 atagaagcaagccatataaccttta 225  Q
    |||||||||||||||||||||||||    
T  20210025 atagaagcaagccatataaccttta 20210001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 22104239 - 22104024
Alignment:
Q  1 acaaacacaattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaaggcacataattcgacgaaaaccaaaaacc 100  Q
    |||||||||||||||||||| | || ||||||||||||||| ||||||| |||||||| | |||||||||||  | | |||||||||| | ||| |||      
T  22104239 acaaacacaattacatgacatccattcaaagaagtgggtgtttccaccaatcatgaaagctaaaagctaaagaaatagaattcgacgatagccataaa-- 22104142  T
Q  101 aaaagctaaagcagaccgtttcaacttgtccaaaatattatgaggatcgattaccgtacttttgaagatacaattgtttctatcctaccatatcacccaa 200  Q
           |||| |||||||||||  |||||||| ||| || |||||||||||||| || ||||||||||||  || |||||||||| |||||| || |||    
T  22104141 -------aaagaagaccgtttcacgttgtccaacatactaagaggatcgattaccatatttttgaagatacggttatttctatccttccatattacacaa 22104049  T
Q  201 atagaagcaagccatataaccttta 225  Q
    |||||||||||||||||||||||||    
T  22104048 atagaagcaagccatataaccttta 22104024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 29361584 - 29361519
Alignment:
Q  11 ttacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaaggcac 76  Q
    |||||||||||| |||||||| ||||||||||||||||| || |||||||||||||| | ||||||    
T  29361584 ttacatgacacccatacaaaggagtgggtgtctccaccaatcgtgaaaaccaaaagcaataggcac 29361519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 31848193 - 31848248
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaa 64  Q
    |||||||||||||| |||||||| |||| |||||||||||| ||||||||||||||    
T  31848193 aattacatgacacccatacaaaggagtgagtgtctccaccaatcatgaaaaccaaa 31848248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 5195488 - 5195424
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaagg 73  Q
    |||||||||||||| |||||| ||||||||| ||||||||| || ||||||||||| | ||||||    
T  5195488 aattacatgacacccatacaatgaagtgggtatctccaccaatcgtgaaaaccaaacgataaagg 5195424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 14782127 - 14782185
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagc 67  Q
    |||||||||||||| |||||||| |||||||||| |||||| ||||| || ||||||||    
T  14782127 aattacatgacacccatacaaaggagtgggtgtcaccaccaatcatgcaagccaaaagc 14782185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 223
Target Start/End: Original strand, 4103336 - 4103425
Alignment:
Q  134 aatattatgaggatcgattaccgtacttttgaagatacaattgtttctatcctaccatatcacccaaatagaagcaagccatataacctt 223  Q
    |||||| | |||||| ||||||| | ||||||||||||| |||||||| |||| ||| ||   ||||| | |||||||||||||||||||    
T  4103336 aatattgtaaggatcaattaccgcatttttgaagatacagttgtttctctccttccaaattgtccaaacacaagcaagccatataacctt 4103425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 5675649 - 5675692
Alignment:
Q  19 caccaatacaaagaagtgggtgtctccaccagtcatgaaaacca 62  Q
    |||| ||||||||||||||||| |||||||| ||||||||||||    
T  5675649 cacctatacaaagaagtgggtgcctccaccaatcatgaaaacca 5675692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 4103220 - 4103301
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaaggcacataattcgacgaaa 90  Q
    |||||||  ||||| |||||||| | ||||||||||||||| |||||||||| ||| || |  || ||| ||||||||||||    
T  4103220 aattacacaacacccatacaaagtaatgggtgtctccaccaatcatgaaaactaaatgcaattggtacaaaattcgacgaaa 4103301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 9756416 - 9756363
Alignment:
Q  11 ttacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaa 64  Q
    |||||| |||||  ||||||| ||||||||||||||||| ||||||| ||||||    
T  9756416 ttacataacacccctacaaaggagtgggtgtctccaccaatcatgaagaccaaa 9756363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 5195363 - 5195283
Alignment:
Q  143 aggatcgattaccgtacttttgaagatacaattgtttctatcctaccatatcacccaaatagaagcaagccatataacctt 223  Q
    |||||| || |||| | ||||||||||||| ||||| || |||| ||| ||  |||||||| |||||||||| ||||||||    
T  5195363 aggatcaataaccgcatttttgaagatacagttgttcctctccttccaaattgcccaaatacaagcaagccaaataacctt 5195283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 1870417 - 1870213
Alignment:
Q  12 tacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaaggcacataattcgacgaaaaccaaaaaccaaaagctaaag 111  Q
    ||||||||||| |||||||| |||||||||| |||||||||||||||| ||||||||| ||| ||| |||||||||| ||||| |||         || |    
T  1870417 tacatgacaccgatacaaagtagtgggtgtcgccaccagtcatgaaaatcaaaagctataggaacaaaattcgacgataaccataaa---------aagg 1870327  T
Q  112 cagaccgtttcaacttgtccaaaatattatgaggatcgattaccgtacttttgaagatacaattgtttctatcctaccatatcacccaaatagaagcaag 211  Q
     |  | |||||| |||||| |||||| |||||||| ||||| || || ||||||| | ||| ||||||||||||| ||| ||  | ||||||||||||||    
T  1870326 aattctgtttcaccttgtcaaaaatactatgaggaccgattgccatatttttgaaaacacagttgtttctatccttccagattgctcaaatagaagcaag 1870227  T
Q  212 ccatataaccttta 225  Q
    ||| ||||||||||    
T  1870226 ccaaataaccttta 1870213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 16632616 - 16632401
Alignment:
Q  1 acaaacacaattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaaggcacataattcgacgaaaaccaaaaacc 100  Q
    ||||| ||| |||||||||||| ||||| || |||||| ||| |||||||||||||||||||||||||| | | ||| |||||||||| ||||| |||      
T  16632616 acaaaaacagttacatgacacccatacacagtagtgggcgtcgccaccagtcatgaaaaccaaaagctataagaacaaaattcgacgataaccataaa-- 16632519  T
Q  101 aaaagctaaagcagaccgtttcaacttgtccaaaatattatgaggatcgattaccgtacttttgaagatacaattgtttctatcctaccatatcacccaa 200  Q
           || | || ||| |||| |||||| |||||| ||||||||||||||||  || ||||||||| ||| ||||||| ||||| ||| ||  |||||    
T  16632518 -------aaggaagtccgcttcaccttgtcaaaaatactatgaggatcgattacaatatttttgaagacacagttgtttcaatccttccagattgcccaa 16632426  T
Q  201 atagaagcaagccatataaccttta 225  Q
    | |||||||||||| |||| |||||    
T  16632425 agagaagcaagccaaataatcttta 16632401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 34505171 - 34504964
Alignment:
Q  7 acaattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaa-ccaaaagctaaaggcacataattcgacgaaaaccaaaaaccaaaag 105  Q
    |||||||||||||| | ||| |||  || || |||||||||||||| |||||| |||||||||||||| | ||||||||| || ||||| |||           
T  34505171 acaattacatgacatccataaaaaatagaggatgtctccaccagtcgtgaaaaaccaaaagctaaaggaatataattcgaagataaccataaa------- 34505079  T
Q  106 ctaaagcagaccgtttcaacttgtccaaaatattatgaggatcgattaccgtacttttgaagatacaattgtttctatcctaccatatcacccaaataga 205  Q
      || | || ||| |||| |||||| | ||||||| ||||||||||||||| | ||||||||| |||||||||||| |||| |||||| ||||| |  ||    
T  34505078 --aaggaagtccgcttcaccttgtcaagaatattacgaggatcgattaccgcatttttgaagacacaattgtttctctccttccatattacccacactga 34504981  T
Q  206 agcaagccatataacct 222  Q
    ||||||||| |||||||    
T  34504980 agcaagccagataacct 34504964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 12527077 - 12527141
Alignment:
Q  3 aaacacaattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagc 67  Q
    ||||| |||||||||||||| ||||| ||||||||||||||| |||| ||||||||| |||||||    
T  12527077 aaacaaaattacatgacacccatacacagaagtgggtgtctcgaccaatcatgaaaatcaaaagc 12527141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 33567292 - 33567368
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaaggcacataattcga 85  Q
    |||||||||||  | |||||||| ||||| ||||||||||| |||||||||||||||| ||| || |||||||||||    
T  33567292 aattacatgacgtccatacaaaggagtggatgtctccaccaatcatgaaaaccaaaagttaatggaacataattcga 33567368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 8303898 - 8303957
Alignment:
Q  10 attacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagcta 69  Q
    ||||||||||| | ||| |||| ||||| ||||||||||| |||||||||||||||||||    
T  8303898 attacatgacatccatataaaggagtggatgtctccaccaatcatgaaaaccaaaagcta 8303957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 24308520 - 24308586
Alignment:
Q  120 ttcaacttgtccaaaatattatgaggatcgattaccgtacttttgaagatacaattgtttctatcct 186  Q
    |||| |||||| ||||||||||||||||||||||| | | ||||||||| ||  |||||||||||||    
T  24308520 ttcaccttgtcaaaaatattatgaggatcgattacagcatttttgaagacacggttgtttctatcct 24308586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 24509475 - 24509515
Alignment:
Q  24 atacaaagaagtgggtgtctccaccagtcatgaaaaccaaa 64  Q
    ||||||||||||||||| |||||||| ||||||||||||||    
T  24509475 atacaaagaagtgggtgcctccaccaatcatgaaaaccaaa 24509515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 16423340 - 16423398
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagc 67  Q
    |||||||||||||| ||||||| |||||| ||||||||||  || |||||| |||||||    
T  16423340 aattacatgacacccatacaaaaaagtggatgtctccaccgatcgtgaaaatcaaaagc 16423398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 20819764 - 20819804
Alignment:
Q  24 atacaaagaagtgggtgtctccaccagtcatgaaaaccaaa 64  Q
    ||||||||||||||||| | |||||| ||||||||||||||    
T  20819764 atacaaagaagtgggtgccaccaccaatcatgaaaaccaaa 20819804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 43656055 - 43655980
Alignment:
Q  10 attacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaaggcacataattcga 85  Q
    ||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||| |||||| |||||    
T  43656055 attacatgacacccatacaaaggagtggatgtctccaccaatcatgaaaaccaaaagctaaagacacatagttcga 43655980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 13780929 - 13780986
Alignment:
Q  7 acaattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaa 64  Q
    ||||||||||||||||||||||||| ||||| | || |||||||||||| ||||||||    
T  13780929 acaattacatgacaccaatacaaagtagtggatatcaccaccagtcatggaaaccaaa 13780986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 17263330 - 17263245
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaaggcacataattcgacgaaaacca 94  Q
    |||||||||||| | ||| |||| ||||||||||||||||| ||||| ||||||||||  ||||| |||| |||||| || |||||    
T  17263330 aattacatgacatccatataaaggagtgggtgtctccaccaatcatggaaaccaaaagaaaaaggaacattattcgaagataacca 17263245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 22681606 - 22681654
Alignment:
Q  24 atacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaag 72  Q
    ||||||||||||||||| |||||||| ||||||||||||||||| ||||    
T  22681606 atacaaagaagtgggtgcctccaccaatcatgaaaaccaaaagccaaag 22681654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 22358830 - 22358911
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaaggcacataattcgacgaaa 90  Q
    |||||||||||| | |||||||  |||||||||| |||||| ||||||||||| || |||| ||| ||| ||||||| ||||    
T  22358830 aattacatgacatccatacaaacgagtgggtgtcgccaccaatcatgaaaacctaacgctataggaacaaaattcgaagaaa 22358911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 6459014 - 6458974
Alignment:
Q  24 atacaaagaagtgggtgtctccaccagtcatgaaaaccaaa 64  Q
    ||||||||||||||||| |||||||| ||||||||||||||    
T  6459014 atacaaagaagtgggtgcctccaccaatcatgaaaaccaaa 6458974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 38651226 - 38651158
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaaggcaca 77  Q
    |||||||||||||| ||||| || ||||| ||||||||||| || |||||| ||||||| | |||||||    
T  38651226 aattacatgacacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaataggcaca 38651158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 47809354 - 47809299
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaa 64  Q
    |||||||| ||||| |||||||||| ||||||||||||||| ||| |||| |||||    
T  47809354 aattacataacacccatacaaagaaatgggtgtctccaccaatcacgaaatccaaa 47809299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 7567105 - 7567143
Alignment:
Q  19 caccaatacaaagaagtgggtgtctccaccagtcatgaa 57  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  7567105 cacctatacaaagaagtgggtgtctccaccaatcatgaa 7567143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 14241217 - 14241176
Alignment:
Q  24 atacaaagaagtgggtgtctccaccagtcatgaaaaccaaaa 65  Q
    ||||||| |||||| ||||||||||| |||||||||||||||    
T  14241217 atacaaaaaagtggatgtctccaccaatcatgaaaaccaaaa 14241176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 644952 - 644888
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaagg 73  Q
    ||||||||||  || ||| |||||||||| | ||||||||| |||||||||||||| | ||||||    
T  644952 aattacatgatgcccatataaagaagtggatatctccaccaatcatgaaaaccaaacgataaagg 644888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 40451971 - 40452031
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagcta 69  Q
    ||||||||| |||| |||| ||||| ||| || |||||| |||||||||||| ||||||||    
T  40451971 aattacatgccacccatacgaagaaatggatgcctccactagtcatgaaaactaaaagcta 40452031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 37014055 - 37014140
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaaggcacataattcgacgaaaacca 94  Q
    ||||||| |||||  |||||||||||||||||||||||||| |||||||||||||| || |  |||||| ||||||||||||||||    
T  37014055 aattacacgacactcatacaaagaagtgggtgtctccaccaatcatgaaaaccaaatgcaattggcacaaaattcgacgaaaacca 37014140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 30036566 - 30036482
Alignment:
Q  1 acaaacacaattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaaggcacataattcgacga 88  Q
    ||||| ||||||||||   |||||||||||| |||||||||| ||| ||||||||||||||||||| |||||| ||| ||||||||||    
T  30036566 acaaaaacaattacat---accaatacaaagtagtgggtgtcaccaacagtcatgaaaaccaaaagttaaaggaacaaaattcgacga 30036482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 135988 - 136069
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaaggcacataattcgacgaaa 90  Q
    |||||||||||||| ||||| |||| ||| ||||||||||| |||||||| |||||||| | ||| | ||||||||| ||||    
T  135988 aattacatgacacccatacacagaattggatgtctccaccaatcatgaaagccaaaagcaagaggaatataattcgaagaaa 136069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 22322556 - 22322611
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaa 64  Q
    |||||||||| ||| |||||||| ||||||||||||||||| || |||||||||||    
T  22322556 aattacatgatacccatacaaaggagtgggtgtctccaccaatcgtgaaaaccaaa 22322611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 9013525 - 9013583
Alignment:
Q  15 atgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaagg 73  Q
    |||||||| |||||||||||||||| ||||||||| |||||||| ||||| | ||||||    
T  9013525 atgacacccatacaaagaagtgggtatctccaccaatcatgaaagccaaacgataaagg 9013583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 2632897 - 2632953
Alignment:
Q  10 attacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaag 66  Q
    ||||||| | ||| ||||||||||||||||||||||| || || |||||||||||||    
T  2632897 attacataatacccatacaaagaagtgggtgtctccatcaatcgtgaaaaccaaaag 2632953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 17186189 - 17186149
Alignment:
Q  24 atacaaagaagtgggtgtctccaccagtcatgaaaaccaaa 64  Q
    ||||||||||||||||| |||||||| ||||||||||||||    
T  17186189 atacaaagaagtgggtgcctccaccaatcatgaaaaccaaa 17186149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 225
Target Start/End: Complemental strand, 30036434 - 30036354
Alignment:
Q  145 gatcgattaccgtacttttgaagatacaattgtttctatcctaccatatcacccaaatagaagcaagccatataaccttta 225  Q
    ||||||||| |||| |||| |||||||| || |||||||||| ||  ||   |||||||||||||| ||||||||||||||    
T  30036434 gatcgattatcgtatttttaaagatacagttatttctatccttccgaattgtccaaatagaagcaatccatataaccttta 30036354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 1463250 - 1463212
Alignment:
Q  28 aaagaagtgggtgtctccaccagtcatgaaaaccaaaag 66  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  1463250 aaagaagtgggtgtcgccaccaatcatgaaaaccaaaag 1463212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 39868243 - 39868202
Alignment:
Q  24 atacaaagaagtgggtgtctccaccagtcatgaaaaccaaaa 65  Q
    ||||||||||||||||  |||||||| |||||||||||||||    
T  39868243 atacaaagaagtgggtacctccaccaatcatgaaaaccaaaa 39868202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 46191337 - 46191394
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaag 66  Q
    |||||||||||||| ||||| | ||| |||||||| ||||| ||||||||| ||||||    
T  46191337 aattacatgacacccatacacaaaagagggtgtcttcaccaatcatgaaaatcaaaag 46191394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 2633021 - 2633101
Alignment:
Q  143 aggatcgattaccgtacttttgaagatacaattgtttctatcctaccatatcacccaaatagaagcaagccatataacctt 223  Q
    |||||| ||||||||| |||||||||  |  |||||||| | || ||| ||  ||||| ||||||||||||||||||||||    
T  2633021 aggatctattaccgtatttttgaagacgcggttgtttcttttcttccaaatagcccaagtagaagcaagccatataacctt 2633101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 52762861 - 52762793
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaaggcaca 77  Q
    |||||||||||||| | ||| |  ||||| ||||||||||| || |||||||||||||| | |||||||    
T  52762861 aattacatgacacccaaacatatgagtggatgtctccaccaatcttgaaaaccaaaagcaacaggcaca 52762793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 36180 - 36243
Alignment:
Q  4 aacacaattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagc 67  Q
    |||| |||||||||||||| |||||||| |||| |||||||||||| |||||||||||||||||    
T  36180 aacaaaattacatgacacccatacaaaggagtgagtgtctccaccaatcatgaaaaccaaaagc 36243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 223
Target Start/End: Original strand, 36301 - 36390
Alignment:
Q  134 aatattatgaggatcgattaccgtacttttgaagatacaattgtttctatcctaccatatcacccaaatagaagcaagccatataacctt 223  Q
    |||| |||||||||||||||||||| |||| |||| ||  |||||||| |||| ||||||  |||||  ||||| |||||| ||||||||    
T  36301 aatactatgaggatcgattaccgtattttttaagacacggttgtttctttccttccatattgcccaaccagaagaaagccaaataacctt 36390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 23257100 - 23257042
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagc 67  Q
    |||||||||||||| ||||| |||||||||||||||||||| ||||||||| |||||||    
T  23257100 aattacatgacacccatacacagaagtgggtgtctccaccaatcatgaaaatcaaaagc 23257042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 24251226 - 24251171
Alignment:
Q  11 ttacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaag 66  Q
    |||||||||||| ||||||||||  |||||||||||||| ||||||||||||||||    
T  24251226 ttacatgacacccatacaaagaatggggtgtctccaccaatcatgaaaaccaaaag 24251171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 26397450 - 26397498
Alignment:
Q  24 atacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaag 72  Q
    ||||||||||||||||| |||||||| ||||||||||||||||| ||||    
T  26397450 atacaaagaagtgggtgcctccaccaatcatgaaaaccaaaagccaaag 26397498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 12824483 - 12824563
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaaggcacataattcgacgaaa 90  Q
    |||||||||||||| ||||| |||| ||| ||||||||||| ||||| ||||||||||  | ||| ||||||||||| ||||    
T  12824483 aattacatgacacccatacatagaattggatgtctccaccaatcatg-aaaccaaaagtaagaggaacataattcgaagaaa 12824563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 12851547 - 12851627
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaaggcacataattcgacgaaa 90  Q
    |||||||||||||| ||||| |||| ||| ||||||||||| ||||| ||||||||||  | ||| ||||||||||| ||||    
T  12851547 aattacatgacacccatacatagaattggatgtctccaccaatcatg-aaaccaaaagtaagaggaacataattcgaagaaa 12851627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 9194690 - 9194761
Alignment:
Q  19 caccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaaggcacataattcgacgaaa 90  Q
    ||||||| ||||| |||| |||||||||||| |||||||||||||| || |  || ||| ||||||||||||    
T  9194690 caccaatgcaaagtagtgagtgtctccaccaatcatgaaaaccaaacgcaactggtacaaaattcgacgaaa 9194761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 1585403 - 1585345
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagc 67  Q
    |||||||||||||| ||||||  ||| || ||||||||||| || ||||||||||||||    
T  1585403 aattacatgacacccatacaataaaggggatgtctccaccaatcgtgaaaaccaaaagc 1585345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 9194797 - 9194885
Alignment:
Q  135 atattatgaggatcgattaccgtacttttgaagatacaattgtttctatcctaccatatcacccaaatagaagcaagccatataacctt 223  Q
    ||||| |||||||| ||||||| | ||||||||||||| |||||||| |||| ||| ||   ||||| | |||| ||||| ||||||||    
T  9194797 atattgtgaggatcaattaccgcatttttgaagatacagttgtttctctccttccaaattgtccaaacacaagcgagccagataacctt 9194885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 40632806 - 40632846
Alignment:
Q  24 atacaaagaagtgggtgtctccaccagtcatgaaaaccaaa 64  Q
    ||||||||||||||||| |||||||| ||||||||| ||||    
T  40632806 atacaaagaagtgggtgcctccaccaatcatgaaaatcaaa 40632846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 15353286 - 15353222
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaagg 73  Q
    |||||||||||||  |||||||||||||||| ||||||||| |||||||||||||| | ||||||    
T  15353286 aattacatgacactcatacaaagaagtgggtatctccaccaatcatgaaaaccaaacgataaagg 15353222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 15172744 - 15172686
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagc 67  Q
    |||||||||||||| |||||||| |||||||||||||| || || |||||| |||||||    
T  15172744 aattacatgacacccatacaaaggagtgggtgtctccatcaatcgtgaaaaacaaaagc 15172686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 19667625 - 19667679
Alignment:
Q  10 attacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaa 64  Q
    ||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||    
T  19667625 attacatgacacccatacaaaggagtgggtgtctccaccaatcatgaaagccaaa 19667679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 31644096 - 31644177
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaaaggcacataattcgacgaaa 90  Q
    |||||||||||||  |||||||  |||||||||| |||||| |||||||||||||| | || ||| ||| ||||||| ||||    
T  31644096 aattacatgacacacatacaaacgagtgggtgtcgccaccaatcatgaaaaccaaacgttataggaacaaaattcgaagaaa 31644177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 7937396 - 7937340
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctcca-ccagtcatgaaaaccaaa 64  Q
    |||||||||||||| ||||||||||||| || |||||| ||| ||||||||||||||    
T  7937396 aattacatgacacccatacaaagaagtgagtatctccatccaatcatgaaaaccaaa 7937340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 7639031 - 7639092
Alignment:
Q  9 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagctaa 70  Q
    |||||||||||| | | |||||| | ||| ||||||||||| |||| |||||||||||||||    
T  7639031 aattacatgacatccaaacaaagtaatggatgtctccaccaatcataaaaaccaaaagctaa 7639092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 2137 - 2081
Alignment:
Q  10 attacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaag 66  Q
    ||||||||||||  |||||||| |||||||||| |||||| ||||||||||||||||    
T  2137 attacatgacactcatacaaaggagtgggtgtcaccaccaatcatgaaaaccaaaag 2081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 9073 - 9017
Alignment:
Q  10 attacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaag 66  Q
    ||||||||||||  |||||||| |||||||||| |||||| ||||||||||||||||    
T  9073 attacatgacactcatacaaaggagtgggtgtcaccaccaatcatgaaaaccaaaag 9017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 1226 - 1266
Alignment:
Q  24 atacaaagaagtgggtgtctccaccagtcatgaaaaccaaa 64  Q
    ||||||||||||||||| |||||||| ||||||||||||||    
T  1226 atacaaagaagtgggtgcctccaccaatcatgaaaaccaaa 1266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 2873 - 2790
Alignment:
Q  132 aaaatattatgaggatcgattaccgtacttttgaagatacaattgtttctatcctaccatatcacccaaatagaagcaagccat 215  Q
    ||||| || ||||||||| |||||||| ||||||||| ||| ||||||||||||| | | ||  |||| |||||||||| ||||    
T  2873 aaaatgttgtgaggatcggttaccgtatttttgaagacacagttgtttctatccttctaaatttcccagatagaagcaaaccat 2790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 2985 - 2927
Alignment:
Q  11 ttacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaaccaaaagcta 69  Q
    |||||||||||  |||||||| ||||| |||| |||||||||||| || ||||||||||    
T  2985 ttacatgacactcatacaaagtagtggatgtcgccaccagtcatggaatccaaaagcta 2927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University