View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5899_low_14 (Length: 212)
Name: NF5899_low_14
Description: NF5899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5899_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 21 - 196
Target Start/End: Original strand, 24898624 - 24898799
Alignment:
| Q |
21 |
gatacactataaataacaacaataccaccacccttctctcatattcattcattctttttctcaactctccaccaaaaagctaaaacatttcaaagtccaa |
120 |
Q |
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| T |
24898624 |
gatacactataaataacaacaataccaccacccttctctcatattcattcattctttttctcaactctccaccaaaaagcaaaagcatttcaacgtccaa |
24898723 |
T |
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| Q |
121 |
ataatttttctgcttcttcaatcatacacaatgaatcaagatattgaagttacaccattttttctatgccctattt |
196 |
Q |
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| T |
24898724 |
acaatttttcagctacttgaatcatacacaatgaatcaagatattgaagttacaccattttttctatgccctattt |
24898799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 24891344 - 24891168
Alignment:
| Q |
17 |
cacagatacactataaataacaacaataccaccacccttctctcatattcattcattctttttctcaactctccaccaaaaagctaaaacatttcaaagt |
116 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
24891344 |
cacagatacactataaataacaa---taccaccacccttctctcatattcattcattctttttctcaactctccaccaaaaagcaataacatttcaaagt |
24891248 |
T |
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| Q |
117 |
ccaaataatttttctgcttcttcaatcatacacaatgaatcaagatattgaagttacaccattttttctatgccctattt |
196 |
Q |
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| T |
24891247 |
ccaaacaatttttcagctacttgaatcatacacaatgaatcaagatattgaagttacaccattttttctatgccctattt |
24891168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 24906139 - 24906258
Alignment:
| Q |
77 |
tttctcaactctccaccaaaaagctaaaacatttcaaagtccaaataatttttctgcttcttcaatcatacacaatgaatcaagatattgaagttacacc |
176 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||||| |||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24906139 |
tttctcaactctccaccaaaaagcaataacatttcaaagtccaaacaatttttcagctacttgaatcatacacaatgaatcaagatattgaagttacacc |
24906238 |
T |
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| Q |
177 |
attttttctatgccctattt |
196 |
Q |
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|||||||||||||||||||| |
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| T |
24906239 |
attttttctatgccctattt |
24906258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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