View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5899_low_2 (Length: 448)
Name: NF5899_low_2
Description: NF5899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5899_low_2 |
 | |
|
| [»] scaffold0627 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 19)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 20 - 440
Target Start/End: Original strand, 8528857 - 8529277
Alignment:
| Q |
20 |
gggattacttcaaaataatttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8528857 |
gggattacttcaaaataatttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgat |
8528956 |
T |
|
| Q |
120 |
atgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatcgatgtt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8528957 |
atgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatcgatgtt |
8529056 |
T |
|
| Q |
220 |
gtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatcccttt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529057 |
gtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatcccttt |
8529156 |
T |
|
| Q |
320 |
aattctcccatgctaataggcctacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcattttcaaagcaga |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8529157 |
aattctcccatgctaataggcctacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaacgactgcaacctctcattttcaaagcaga |
8529256 |
T |
|
| Q |
420 |
aaaccaatattgacctttgct |
440 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
8529257 |
aaaccaatattgacctttgct |
8529277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 20 - 439
Target Start/End: Original strand, 8535412 - 8535840
Alignment:
| Q |
20 |
gggattacttcaaaataatttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgat |
119 |
Q |
| |
|
||||||||||||||| ||||| | |||||| | |||||||||||||| ||| |||||||| |||||||| |||||| ||||||||||| ||||||||| |
|
|
| T |
8535412 |
gggattacttcaaaaaaatttgaactactcccgtaaattcgaaaaacttcgaatccatatttctcaggttcatagtagataaaacaattgcaggaatgat |
8535511 |
T |
|
| Q |
120 |
atgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacga---tccaaaggattgaacgaagtatcgat |
216 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| ||| |||||||||| |||||||| || |
|
|
| T |
8535512 |
ataacaatatggcagcaccttcttcaaagtgttttattggccagcttaaaccatatctccgtggaacacgactttccgaaggattgaatgaagtatcaat |
8535611 |
T |
|
| Q |
217 |
gttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| ||||||||| |
|
|
| T |
8535612 |
gttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacatcagataaaaaggtcgaatcacaaatgtaaagaaatccc |
8535711 |
T |
|
| Q |
317 |
tttaattctcccatgctaataggcctacaacaaaaaa------cattatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcatttt |
410 |
Q |
| |
|
||||||||||||||||||||| | ||| || || || ||||||||||||||||| |||||||||||||||||||||| || | ||||| ||| |
|
|
| T |
8535712 |
tttaattctcccatgctaatatgtctattactaagaaatccattattatgatttccaaacatctgtggaggagaaggaaatgacttcagcgtctcacttt |
8535811 |
T |
|
| Q |
411 |
caaagcagaaaaccaatattgacctttgc |
439 |
Q |
| |
|
|||||||||||| |||||||||||||||| |
|
|
| T |
8535812 |
caaagcagaaaatcaatattgacctttgc |
8535840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 20 - 440
Target Start/End: Complemental strand, 9074915 - 9074492
Alignment:
| Q |
20 |
gggattacttcaaaataatttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgat |
119 |
Q |
| |
|
||||||||||||||| | ||| |||||||||||||||||||||||||||| |||||||| |||||||| ||| || ||||||||||| || |||||| |
|
|
| T |
9074915 |
gggattacttcaaaaaactttgaatgactcccatgaattcgaaaaactttgaatccatatttctcaggttcatagaagataaaacaattgtagcaatgat |
9074816 |
T |
|
| Q |
120 |
atgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacga---tccaaaggattgaacgaagtatcgat |
216 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| |||||| |||||| || || | || || ||||||||||||||||||| || |
|
|
| T |
9074815 |
ataacaatatggcagcaccttcttcaaagtgttttatcggcca---taaacctgaaccccatgtaataagacagcccgaaggattgaacgaagtatcaat |
9074719 |
T |
|
| Q |
217 |
gttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccc |
316 |
Q |
| |
|
|||||||| ||||||||||||||| |||| |||||||||||||||||||||| |||||||| ||||| ||| ||| ||||||||||| ||||||||| |
|
|
| T |
9074718 |
gttgtaaactttagtccatgattcttcaataccatattcattcataacccacactgaaacatcagataaaaatgtccagtcacaaatgtaaagaaatccc |
9074619 |
T |
|
| Q |
317 |
tttaattctcccatgcta-ataggcctacaacaa--aaaacattatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcattttcaa |
413 |
Q |
| |
|
||||||||||||||| || | | |||||| | |||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9074618 |
tttaattctcccatgatatgtctgttatcaacaattccactattatggtttccaaacacatgcggaggagaaggaaatgactgcaacctctcactttcaa |
9074519 |
T |
|
| Q |
414 |
agcagaaaaccaatattgacctttgct |
440 |
Q |
| |
|
| ||||||| ||||||||||||||||| |
|
|
| T |
9074518 |
aacagaaaaacaatattgacctttgct |
9074492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 44 - 440
Target Start/End: Complemental strand, 1600451 - 1600066
Alignment:
| Q |
44 |
cgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttctt |
143 |
Q |
| |
|
||||||||||||||| |||| ||||| | | |||||| ||||||| || ||| | ||||||||| | || |||| ||||||||||||||||||||| |
|
|
| T |
1600451 |
cgactcccatgaatttcaaaagctttgcatcgatatttcgcaggttcataatagattaaacaattgta---atcatataacaatatggcagcaccttctt |
1600355 |
T |
|
| Q |
144 |
caaagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctcc |
243 |
Q |
| |
|
||||||||| ||||||||| |||||| ||| || || || |||||||||| ||||||||| ||||||| |||||||||||||||| | |
|
|
| T |
1600354 |
caaagtgttgtatcggcca---taaacccgaacaccatgaaa---------aaggattgaatgaagtatcgtacttgtaaaccttagtccatgattcttc |
1600267 |
T |
|
| Q |
244 |
aatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatgctaataggcc-- |
341 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||| ||||| |||||| | ||||||||||| |||||||||||||||||||||||||||| | | | |
|
|
| T |
1600266 |
aatgccatattccttcataacccacattggaacatcagataaaaaggtag--tcacaaatgtaaagaaatccctttaattctcccatgctaacatggctg |
1600169 |
T |
|
| Q |
342 |
-tacaacaa---aaaacattatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgaccttt |
437 |
Q |
| |
|
||| |||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||| |
|
|
| T |
1600168 |
ttaccacaagttccattattatgatttccaaactcatgtggaggagaaggaaatgactgcaacctctcactttcaaaacagaaaaccaatattgacattt |
1600069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 53 - 278
Target Start/End: Original strand, 8636811 - 8637039
Alignment:
| Q |
53 |
tgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttcaaagtgtt |
152 |
Q |
| |
|
||||||| |||||||||||| ||| ||| || ||||| |||||| ||| ||||||| ||||||||||| ||||||||||||| || ||||||||||||| |
|
|
| T |
8636811 |
tgaattctaaaaactttgaaaccaagtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgtt |
8636910 |
T |
|
| Q |
153 |
ttatcggccagcttaaaccataaccccgtggaacacgat---ccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgcc |
249 |
Q |
| |
|
||| |||||| | || |||||||| | | | | || | |||||||| ||| | |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8636911 |
ttaccggccatcatataccataacgctgcgaatcaggtctgcccaaaggactgaccaaagtatcgatgttgtaaaccttagtccatgattctccaatgcc |
8637010 |
T |
|
| Q |
250 |
atattcattcataacccacattgaaacat |
278 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
|
|
| T |
8637011 |
atattcattcataacccacattgcaacat |
8637039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 53 - 437
Target Start/End: Original strand, 8644156 - 8644546
Alignment:
| Q |
53 |
tgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttcaaagtgtt |
152 |
Q |
| |
|
|||||||||||||||||||| ||| ||| | ||||| |||||| ||| ||||||| ||||||||||| ||||||||||||| || |||||||||| || |
|
|
| T |
8644156 |
tgaattcgaaaaactttgaaagcatgtttcttgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtttt |
8644255 |
T |
|
| Q |
153 |
ttatcggccagcttaaaccataaccccgtggaacacgat---ccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgcc |
249 |
Q |
| |
|
||| |||||| | ||||||||||| | | | | || | |||||||| ||| | ||||||| |||||||||| |||||||||||||||||||||| | |
|
|
| T |
8644256 |
ttaccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggactgatcaaagtatcaatgttgtaaaccttagtccatgattctccaatgtc |
8644355 |
T |
|
| Q |
250 |
atattcattcataacccacattgaaacatta-gatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatgctaataggc---ctaca |
345 |
Q |
| |
|
||||||||||||||||||||||| ||||| | || | || | | ||| |||||||| || |||||| ||||||||||||||| |||| || ||| |
|
|
| T |
8644356 |
atattcattcataacccacattgcaacatcacgaaaagaatat-gtatcgcaaatgtaaagtaatccccttaattctcccatgcgaatacgctcgttacg |
8644454 |
T |
|
| Q |
346 |
acaaaaaacatta---tgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgaccttt |
437 |
Q |
| |
|
|| ||| ||||| |||||| |||||| |||||||||||||||||| |||||||||||| ||||||| |||||| |||||| ||||||| |
|
|
| T |
8644455 |
acgaaatccattattttgattttgaaacac---tggaggagaaggaaatgattgcaacctctcactttcaaaacagaaacacaatatagaccttt |
8644546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 53 - 278
Target Start/End: Original strand, 8677749 - 8677986
Alignment:
| Q |
53 |
tgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttcaaagtgtt |
152 |
Q |
| |
|
|||||||||||||||||||| |||| ||| || ||||| |||||| ||| ||||||| ||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
8677749 |
tgaattcgaaaaactttgaaaccatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagcaccctcttcaaagtgtt |
8677848 |
T |
|
| Q |
153 |
ttatcggccagcttaaaccataaccccgtggaaca---cgatccaaaggattga----acg-----aagtatcgatgttgtaaatcttagtccatgattc |
240 |
Q |
| |
|
||| |||||| | |||||||||| ||| | | || | |||||||| ||| ||| | |||| |||||||||| ||||||||||||||| |
|
|
| T |
8677849 |
ttaccggccaacataaaccataatgccgcgaatcaggtctgcccaaaggactgacaggacggaccacaatatcaatgttgtaaaccttagtccatgattc |
8677948 |
T |
|
| Q |
241 |
tccaatgccatattcattcataacccacattgaaacat |
278 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
8677949 |
tccaatgccatattcattcatatcccacattgcaacat |
8677986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 210 - 440
Target Start/End: Original strand, 8641475 - 8641720
Alignment:
| Q |
210 |
tatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcg------gatcacaaat |
303 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| | | | |||||||| |||||||||| |
|
|
| T |
8641475 |
tatcaatgttgtaagccttagtccatgattctccaatgccatattcattcataacccacactgtgacatcaaagaaaaaggtcgagtcacgatcacaaat |
8641574 |
T |
|
| Q |
304 |
gtatagaaatccctttaattctcccatgctaataggcctacaacaaaaaac---------attatgatttccaaacacatgtggaggagaaggaaatgac |
394 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||| |||| || | || ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8641575 |
gtaaggaaatccctttaactctcccatgctaataagcctgttaccatgaattccattattattatgatttccaaacacatgtggaggagaaggaaataac |
8641674 |
T |
|
| Q |
395 |
tgcaacctctcattttcaaagcagaaaaccaatattgacctttgct |
440 |
Q |
| |
|
| ||| |||||| |||| || |||||| |||||||||||||||| |
|
|
| T |
8641675 |
ttcaatctctcactttccaaacagaaacataatattgacctttgct |
8641720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 205 - 414
Target Start/End: Complemental strand, 2856897 - 2856682
Alignment:
| Q |
205 |
cgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatg |
304 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | | | | || ||||||| |
|
|
| T |
2856897 |
cgaagtatcaatgttgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacattctcgagagacgatctatgacaaatg |
2856798 |
T |
|
| Q |
305 |
tatagaaatccctttaattctcccatgctaataggc---ctacaacaaaaaacatt---atgatttccaaacacatgtggaggagaaggaaatgactgca |
398 |
Q |
| |
|
|| ||||||||||| |||||||||| ||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2856797 |
taaagaaatcccttcaattctcccaatctaataggcatgctatggggaaatccattatcatgatttccaaacacatgtggaggagaaggaaacgactgca |
2856698 |
T |
|
| Q |
399 |
acctctcattttcaaa |
414 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
2856697 |
acctctcactttcaaa |
2856682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 205 - 414
Target Start/End: Complemental strand, 2874507 - 2874292
Alignment:
| Q |
205 |
cgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatg |
304 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | | | | || ||||||| |
|
|
| T |
2874507 |
cgaagtatcaatgttgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacattctcgagagacgatctatgacaaatg |
2874408 |
T |
|
| Q |
305 |
tatagaaatccctttaattctcccatgctaataggc---ctacaacaaaaaacatt---atgatttccaaacacatgtggaggagaaggaaatgactgca |
398 |
Q |
| |
|
|| ||||||||||| |||||||||| ||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2874407 |
taaagaaatcccttcaattctcccaatctaataggcatgctatggggaaatccattatcatgatttccaaacacatgtggaggagaaggaaacgactgca |
2874308 |
T |
|
| Q |
399 |
acctctcattttcaaa |
414 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
2874307 |
acctctcactttcaaa |
2874292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 205 - 414
Target Start/End: Complemental strand, 2845070 - 2844855
Alignment:
| Q |
205 |
cgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatg |
304 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | | | | || ||||||| |
|
|
| T |
2845070 |
cgaagtatcaatgctgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacattctcaagagacgatatatgacaaatg |
2844971 |
T |
|
| Q |
305 |
tatagaaatccctttaattctcccatgctaataggc---ctacaacaaaaaacatt---atgatttccaaacacatgtggaggagaaggaaatgactgca |
398 |
Q |
| |
|
|| ||||||||||| |||||||||| ||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2844970 |
taaagaaatcccttcaattctcccaatctaataggcatgctaaggggaaatccattatcatgatttccaaacacatgtggaggagaaggaaacgactgca |
2844871 |
T |
|
| Q |
399 |
acctctcattttcaaa |
414 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
2844870 |
acctctcactttcaaa |
2844855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 2905003 - 2904938
Alignment:
| Q |
207 |
aagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattg |
272 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2905003 |
aagtatcaatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattg |
2904938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 50 - 337
Target Start/End: Complemental strand, 8548256 - 8547984
Alignment:
| Q |
50 |
ccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttcaaagt |
149 |
Q |
| |
|
||||||||||||||| |||||| |||||||| || || | ||||| |||||||||| | ||||||||| |||||| ||||||||| |||||||||| |
|
|
| T |
8548256 |
ccatgaattcgaaaatctttgactccatatttatcggggttatagtaagtaaaacaatccaatgaatgatataacaatacggcagcaccctcttcaaagt |
8548157 |
T |
|
| Q |
150 |
gttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgcc |
249 |
Q |
| |
|
|||||| |||| | | ||| ||| || ||| ||| |||||||| | ||||||| |||| |||||||||||||||||| ||| || |
|
|
| T |
8548156 |
gttttaccggcaaacacaaagcatgacgccgcgga---------gaaggattggtcaaagtatcaatgtggtaaatcttagtccatgactct------cc |
8548072 |
T |
|
| Q |
250 |
atattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatgctaata |
337 |
Q |
| |
|
|||||| |||||||||||||||| ||||| ||| | | || || ||||||||||| ||| |||||||||||||||||| ||||||| |
|
|
| T |
8548071 |
atattcgttcataacccacattgtaacataagagagatagttccagtcacaaatgtaaagacatccctttaattctcccaagctaata |
8547984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 364 - 438
Target Start/End: Complemental strand, 2904848 - 2904774
Alignment:
| Q |
364 |
tccaaacacatgtggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttg |
438 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| ||||||| ||||||| | |||| |||||||||| |||| |
|
|
| T |
2904848 |
tccaaacatatgtggaggagaaggaaatgattgcatcctctcactttcaaaactgaaacacaatattgacttttg |
2904774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 437
Target Start/End: Original strand, 8637140 - 8637201
Alignment:
| Q |
376 |
tggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgaccttt |
437 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| || |||||| |||||| ||||||| |
|
|
| T |
8637140 |
tggaggagaaggaaatgattgcaacctctcattttctaaacagaaacacaatatagaccttt |
8637201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 8641357 - 8641435
Alignment:
| Q |
101 |
aaacaattggaggaatgatatgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataacccc |
179 |
Q |
| |
|
||||||||| ||||||||||| || ||| |||||||| |||||||||||| ||| |||||| | || ||||||||||| |
|
|
| T |
8641357 |
aaacaattgcaggaatgatataaccataacgcagcaccatcttcaaagtgtattaccggccaacatacaccataacccc |
8641435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 2857018 - 2856974
Alignment:
| Q |
48 |
tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt |
92 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
2857018 |
tcccttgaattcgaaaaactttgaacccatgtttctcaggttcgt |
2856974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 2874628 - 2874584
Alignment:
| Q |
48 |
tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt |
92 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
2874628 |
tcccttgaattcgaaaaactttgaacccatgtttctcaggttcgt |
2874584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 2845191 - 2845147
Alignment:
| Q |
48 |
tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt |
92 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| ||| |||||||||| |
|
|
| T |
2845191 |
tcccttgaattcgaaaaactttgaactcatgtttctcaggttcgt |
2845147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 21 - 440
Target Start/End: Original strand, 9443019 - 9443438
Alignment:
| Q |
21 |
ggattacttcaaaataatttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgata |
120 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9443019 |
ggattacttcaaaataatttttccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattgaaggaatgata |
9443118 |
T |
|
| Q |
121 |
tgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatcgatgttg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443119 |
tgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatcgatgttg |
9443218 |
T |
|
| Q |
221 |
taaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatcccttta |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443219 |
taaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatcccttta |
9443318 |
T |
|
| Q |
321 |
attctcccatgctaataggcctacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcattttcaaagcagaa |
420 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9443319 |
attctcccatgctaataggcctactacaataaacattatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcactttcaaagcagaa |
9443418 |
T |
|
| Q |
421 |
aaccaatattgacctttgct |
440 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
9443419 |
aaccaatattgacctttgct |
9443438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 44 - 440
Target Start/End: Complemental strand, 48362020 - 48361618
Alignment:
| Q |
44 |
cgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttctt |
143 |
Q |
| |
|
|||||||| ||||| ||||| ||||| | | |||||| |||||||| || ||| | |||| | | ||||||||||| ||||||||||||||||||||| |
|
|
| T |
48362020 |
cgactcccgtgaatatgaaaagctttgcatctatatttctcaggttcataatagattaaacggtcgtaggaatgatataacaatatggcagcaccttctt |
48361921 |
T |
|
| Q |
144 |
caaagtgttttatcggccagcttaaaccataaccccgtggaacacgatc---caaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattc |
240 |
Q |
| |
|
||||||||||||||||||| |||| | || || | | || | | |||||||||||| ||||| ||||||||||| ||||||| ||||||| |
|
|
| T |
48361920 |
caaagtgttttatcggcca---taaagctgaatgccaagaagcaaaactgctcgaaggattgaacgcagtattgatgttgtaaaccttagtctatgattc |
48361824 |
T |
|
| Q |
241 |
tccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatgctaataggc |
340 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
48361823 |
ttcaataccatattcattcataacccacattgaaacatcagatgcaaaggtcgagtcacaaatgtaaagaaatccctttaattctcccatgctaatatgc |
48361724 |
T |
|
| Q |
341 |
ctacaacaaaaaa------cattatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgacc |
434 |
Q |
| |
|
|| || || || |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| ||||||||||| |
|
|
| T |
48361723 |
ctgttaccaagaattccattattatgatttccaaacacatgtggaggagaaggaaatgactgcaccctctcactttcaaaacagaaaaacaatattgacc |
48361624 |
T |
|
| Q |
435 |
tttgct |
440 |
Q |
| |
|
|||||| |
|
|
| T |
48361623 |
tttgct |
48361618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 48 - 406
Target Start/End: Original strand, 35779776 - 35780119
Alignment:
| Q |
48 |
tcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttcaaa |
147 |
Q |
| |
|
||||| ||||||||||||||||| | |||||||| |||||||| ||||| ||||||||||| | ||||||||| ||||||||||| ||||| |
|
|
| T |
35779776 |
tcccacgaattcgaaaaactttgtatccatatttctcaggttcaaagtagataaaacaattgcatgaatgatataacaatatggca---------tcaaa |
35779866 |
T |
|
| Q |
148 |
gtgttttatcggccagcttaaaccataaccccgtggaacacgat---ccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctcca |
244 |
Q |
| |
|
| |||||| |||||| | ||||||||||| | ||| || | ||| | | || ||||| |||||| || |||||||||| ||||||||| |||||| || |
|
|
| T |
35779867 |
gggttttaccggccaacataaaccataacgcggtgaaataggatagcctagagaattgaccgaagtctcaatgttgtaaaccttagtccacgattcttca |
35779966 |
T |
|
| Q |
245 |
atgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatgctaataggcctac |
344 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| | | ||| || ||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
35779967 |
atgccatgctcattcataacccacattgtaacatcaacaaaaaaattcaagtcacaaatgtaaagaaatccctttaattctcccatgctaatacgcct-- |
35780064 |
T |
|
| Q |
345 |
aacaaaaaacattatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctca |
406 |
Q |
| |
|
| || |||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35780065 |
-------attatcatgaattccaaacacatgtggaggagaaggaaatggctgcaacctctca |
35780119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 26324287 - 26324198
Alignment:
| Q |
195 |
aaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagata |
284 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26324287 |
aaggattgaacgaagcatcgatgttgtaaatcttagtccatgattctccagtgccatattcattcataacccacattgaaacatcagata |
26324198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 48 - 162
Target Start/End: Original strand, 5130745 - 5130860
Alignment:
| Q |
48 |
tcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggt-aaaacaattggaggaatgatatgacaatatggcagcaccttcttcaa |
146 |
Q |
| |
|
||||||||||||||||||||||| | | |||||| || ||||| | ||| | |||||| ||| ||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
5130745 |
tcccatgaattcgaaaaactttgtatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaa |
5130844 |
T |
|
| Q |
147 |
agtgttttatcggcca |
162 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
5130845 |
agtgttttaccggcca |
5130860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 414
Target Start/End: Original strand, 5130959 - 5131081
Alignment:
| Q |
295 |
atcacaaatgtatagaaatccctttaattctcccatgctaataggcc---tacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaat |
391 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||| ||| || | | | ||||| ||||||||||| ||||||| |||||||||||||| ||| |
|
|
| T |
5130959 |
atcagaaatgtaaagaaatccctttaattctcccatgccgatatgctcggtgccataaaaatcattatgattttcaaacacgtgtggaggagaagggaat |
5131058 |
T |
|
| Q |
392 |
gactgcaacctctcattttcaaa |
414 |
Q |
| |
|
|| ||||| |||||| ||||||| |
|
|
| T |
5131059 |
gattgcaatctctcactttcaaa |
5131081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 207 - 337
Target Start/End: Original strand, 16716447 - 16716577
Alignment:
| Q |
207 |
aagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgta |
306 |
Q |
| |
|
||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| | | ||| ||||||| |
|
|
| T |
16716447 |
aagtatcaatgtggtaaaccttagtccatgattctccaatgccatattcattcataacccacattgtaacatattcgaagaagtttgagtcagaaatgta |
16716546 |
T |
|
| Q |
307 |
tagaaatccctttaattctcccatgctaata |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
16716547 |
tagaaatccctttaattctcccatgctaata |
16716577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 16716299 - 16716405
Alignment:
| Q |
49 |
cccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttcaaag |
148 |
Q |
| |
|
|||||||||||||||| |||| |||||||| | ||| || ||||| |||||||||| ||||||||| |||||| | ||||||| ||||||||| |
|
|
| T |
16716299 |
cccatgaattcgaaaacgcttgacaccatatttattaggctcatagtaagtaaaacaatcatttgaatgatataacaatacgccagcaccctcttcaaag |
16716398 |
T |
|
| Q |
149 |
tgtttta |
155 |
Q |
| |
|
||||||| |
|
|
| T |
16716399 |
tgtttta |
16716405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 194 - 337
Target Start/End: Original strand, 4735 - 4878
Alignment:
| Q |
194 |
aaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcg |
293 |
Q |
| |
|
||||||||| || |||||| |||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| || || | | |
|
|
| T |
4735 |
aaaggattgtacaaagtattaatgtggtaaaccttagtccatgattcaccaatgccatattcattcataacccacattgtaacatattttaaggagtttg |
4834 |
T |
|
| Q |
294 |
gatcacaaatgtatagaaatccctttaattctcccatgctaata |
337 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4835 |
agtcacaaatgtaaagaaatccctttaattctcccatgctaata |
4878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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