View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5899_low_3 (Length: 330)
Name: NF5899_low_3
Description: NF5899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5899_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 52445797 - 52446111
Alignment:
| Q |
1 |
tttaatttcttcatacaaactattgagtactaacacatttgtctacaagttttaactaatcatgtaaaaatatcaaaattgctaggtcgaacctcatgat |
100 |
Q |
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| T |
52445797 |
tttaatttcttcttacaaactattgagtactaacacatttgtctaaaagttttaactaaacatgtaaaaatatcaaaatttctaggtcgaacctcatgat |
52445896 |
T |
|
| Q |
101 |
atgagtttgaaccgtgacacgtatgatgatgttgatgtttgatttactcttcatgacttcatgtgttgttgtataatgctttggttgagttgatgctctg |
200 |
Q |
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| T |
52445897 |
atgagtttgaaccctgacacgtatgatgatgttgatgtttgatttactcttc--------atgtgttgttgtataatgctttggtcgagttgatactctg |
52445988 |
T |
|
| Q |
201 |
ttcacaatcataatgtatagttatgttgatgttcattattttattattggtgtttatttacatctttctattgtttcaatttatggatgattcacaattt |
300 |
Q |
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| T |
52445989 |
ttcacaatcataatgtatagttgtgttgatgttcattattttattattggcgtttatttacatctttctattgtttcaatttatggatgattcacaattt |
52446088 |
T |
|
| Q |
301 |
caatcgcaatgtacgtgtctctg |
323 |
Q |
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||||| ||||||| ||||||||| |
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| T |
52446089 |
caatcacaatgtatgtgtctctg |
52446111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 52446727 - 52447031
Alignment:
| Q |
1 |
tttaatttcttcatacaaactattgagtactaacacatttgtctacaagttttaactaatcatgtaaaaatatcaaaattgctaggtcgaacctcatgat |
100 |
Q |
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|||||||| |||||||||| |||| || ||||||| || ||||||||||||||| ||| ||||||||||||| |||| |||||||| |||||||||| |
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| T |
52446727 |
tttaatttattcatacaaattattaagcactaacatatctgtctacaagttttaggtaaacatgtaaaaatattgaaatctctaggtcggacctcatgat |
52446826 |
T |
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| Q |
101 |
atgagtttgaaccgtgacacgt----------atgatgatgttgatgtttgatttactcttcatgacttcatgtgttgttgtataatgctttggttgagt |
190 |
Q |
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||||||||||||| ||| |||| | |||||| ||||||||||||||||||| | || |||||||||||||||||| |||||| |
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| T |
52446827 |
atgagtttgaaccttgatacgttcacttatgtacgatgatattgatgtttgatttactctccgtg--------tgttgttgtataatgcttcaattgagt |
52446918 |
T |
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| Q |
191 |
tgatgctctgttcacaatcataatgtatagttatgttgatgttcattattttattattggtgtttatttacatctttctattgtttcaatttatggatga |
290 |
Q |
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||||||||| | ||||||| |||||||| |||||||||||||||||| || ||||||||||||||||||||| ||| |||||||| |||||| |||||| |
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| T |
52446919 |
tgatgctctatccacaatcgtaatgtatggttatgttgatgttcattgttctattattggtgtttatttacacgtttttattgttttaatttagggatga |
52447018 |
T |
|
| Q |
291 |
ttcacaatttcaat |
304 |
Q |
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| T |
52447019 |
tt-acaatttcaat |
52447031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 52447708 - 52447786
Alignment:
| Q |
1 |
tttaatttcttcatacaaactattgagtactaacacatttgtctacaagttttaactaatcatgtaaaaatatcaaaat |
79 |
Q |
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||||||||||||||||||||| || || |||| ||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
52447708 |
tttaatttcttcatacaaacttttaagcactagcacatttgtctacaagtttgaactaaacatgtaaaaatatcaaaat |
52447786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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