View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5900-Insertion-1 (Length: 1120)

Name: NF5900-Insertion-1
Description: NF5900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5900-Insertion-1
NF5900-Insertion-1
[»] chr8 (13 HSPs)
chr8 (34-502)||(43969384-43969846)
chr8 (694-1068)||(43968881-43969251)
chr8 (531-634)||(43969252-43969355)
chr8 (886-994)||(968361-968469)
chr8 (890-994)||(11492042-11492146)
chr8 (887-994)||(29431011-29431118)
chr8 (887-994)||(8484999-8485106)
chr8 (887-962)||(16852340-16852415)
chr8 (887-962)||(28783060-28783135)
chr8 (945-995)||(31087226-31087276)
chr8 (889-994)||(3624582-3624686)
chr8 (888-962)||(29858050-29858124)
chr8 (887-940)||(6530807-6530860)
[»] chr3 (14 HSPs)
chr3 (890-994)||(30510168-30510272)
chr3 (887-994)||(10499078-10499185)
chr3 (887-994)||(51903847-51903954)
chr3 (929-994)||(45308871-45308936)
chr3 (887-994)||(10445108-10445216)
chr3 (887-994)||(31520574-31520681)
chr3 (887-985)||(14186648-14186745)
chr3 (894-994)||(2667869-2667969)
chr3 (887-972)||(8051214-8051299)
chr3 (945-993)||(32639003-32639051)
chr3 (886-962)||(53956383-53956459)
chr3 (886-960)||(2597223-2597297)
chr3 (887-996)||(8170672-8170781)
chr3 (887-972)||(15048052-15048137)
[»] chr5 (7 HSPs)
chr5 (887-994)||(30109278-30109384)
chr5 (887-994)||(22020831-22020938)
chr5 (887-994)||(8278244-8278351)
chr5 (886-994)||(16773806-16773914)
chr5 (886-962)||(21589287-21589363)
chr5 (926-994)||(29173529-29173597)
chr5 (887-940)||(18989024-18989077)
[»] chr7 (17 HSPs)
chr7 (887-994)||(25590611-25590718)
chr7 (887-965)||(48771938-48772016)
chr7 (887-994)||(30579335-30579442)
chr7 (908-994)||(45228994-45229080)
chr7 (887-995)||(23301570-23301678)
chr7 (890-994)||(43663064-43663168)
chr7 (887-994)||(2446308-2446415)
chr7 (887-972)||(26459401-26459486)
chr7 (890-962)||(15905675-15905746)
chr7 (887-979)||(33869429-33869521)
chr7 (887-967)||(39631844-39631924)
chr7 (907-994)||(5668540-5668627)
chr7 (887-958)||(48039652-48039723)
chr7 (952-994)||(22035463-22035505)
chr7 (887-965)||(31835192-31835270)
chr7 (929-994)||(41519079-41519144)
chr7 (945-994)||(48079701-48079750)
[»] chr1 (10 HSPs)
chr1 (887-994)||(16893394-16893501)
chr1 (887-979)||(40257399-40257491)
chr1 (894-994)||(42983343-42983443)
chr1 (887-994)||(51814494-51814601)
chr1 (949-995)||(48619177-48619223)
chr1 (887-971)||(19528319-19528403)
chr1 (948-994)||(12993956-12994002)
chr1 (887-985)||(19940850-19940948)
chr1 (908-962)||(52029938-52029992)
chr1 (893-994)||(43445969-43446070)
[»] scaffold0009 (1 HSPs)
scaffold0009 (887-979)||(19831-19923)
[»] scaffold0258 (1 HSPs)
scaffold0258 (887-994)||(15292-15399)
[»] chr6 (8 HSPs)
chr6 (891-962)||(10338175-10338246)
chr6 (887-980)||(12234490-12234583)
chr6 (887-967)||(33549104-33549184)
chr6 (924-995)||(17736743-17736814)
chr6 (887-972)||(30127400-30127485)
chr6 (889-994)||(32613109-32613214)
chr6 (887-994)||(31622960-31623067)
chr6 (908-994)||(6385883-6385969)
[»] chr4 (15 HSPs)
chr4 (887-962)||(55427201-55427276)
chr4 (934-995)||(32662801-32662862)
chr4 (890-962)||(41346964-41347036)
chr4 (887-995)||(51948480-51948588)
chr4 (887-994)||(7949423-7949530)
chr4 (928-994)||(51954155-51954221)
chr4 (887-972)||(37109342-37109427)
chr4 (945-994)||(46174353-46174402)
chr4 (887-971)||(19238569-19238653)
chr4 (887-994)||(21660113-21660220)
chr4 (887-994)||(21668877-21668984)
chr4 (887-994)||(37274428-37274536)
chr4 (889-920)||(40284029-40284060)
chr4 (887-994)||(46545711-46545818)
chr4 (886-959)||(17618280-17618353)
[»] chr2 (21 HSPs)
chr2 (891-994)||(3001383-3001486)
chr2 (887-994)||(19016031-19016138)
chr2 (887-962)||(39714992-39715067)
chr2 (945-993)||(33569828-33569876)
chr2 (886-994)||(42327364-42327472)
chr2 (887-994)||(29503271-29503377)
chr2 (887-994)||(42602554-42602661)
chr2 (887-972)||(40416381-40416466)
chr2 (886-962)||(26482092-26482167)
chr2 (887-995)||(29197344-29197452)
chr2 (887-971)||(37480075-37480159)
chr2 (890-993)||(2311724-2311830)
chr2 (887-994)||(7799005-7799111)
chr2 (887-994)||(19244109-19244216)
chr2 (891-982)||(24191842-24191933)
chr2 (895-985)||(21213777-21213867)
chr2 (929-995)||(31573609-31573675)
chr2 (908-994)||(41504905-41504991)
chr2 (889-994)||(12086098-12086203)
chr2 (929-994)||(33582015-33582080)
chr2 (887-972)||(41908629-41908714)
[»] scaffold0126 (1 HSPs)
scaffold0126 (908-979)||(25331-25402)
[»] scaffold0118 (1 HSPs)
scaffold0118 (887-994)||(41602-41709)
[»] scaffold0032 (1 HSPs)
scaffold0032 (887-994)||(112282-112389)
[»] scaffold0299 (1 HSPs)
scaffold0299 (893-979)||(11534-11620)
[»] scaffold0070 (1 HSPs)
scaffold0070 (890-992)||(38873-38975)
[»] scaffold0391 (1 HSPs)
scaffold0391 (894-983)||(6558-6647)
[»] scaffold0211 (1 HSPs)
scaffold0211 (887-995)||(24053-24161)
[»] scaffold0194 (1 HSPs)
scaffold0194 (891-979)||(13030-13118)
[»] scaffold0180 (1 HSPs)
scaffold0180 (908-979)||(19946-20017)
[»] scaffold0008 (1 HSPs)
scaffold0008 (945-995)||(49364-49414)
[»] scaffold0955 (1 HSPs)
scaffold0955 (890-979)||(3466-3554)
[»] scaffold0047 (1 HSPs)
scaffold0047 (886-979)||(14956-15048)
[»] scaffold0021 (1 HSPs)
scaffold0021 (894-994)||(156958-157056)


Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 34 - 502
Target Start/End: Complemental strand, 43969846 - 43969384
Alignment:
Q  34 gcgaagtggaatgcaatgattgaggtttcaaccttatatttcatgttatcaatgggagtcttgaagagtttatagtggtcatgtattaggcattttgatg 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43969846 gcgaagtggaatgcaatgattgaggtttcaaccttatatttcatgttatcaatgggagtcttgaagagtttatagtggtcatgtattaggcattttgatg 43969747  T
Q  134 tctttgattttcttcattttggtcacacacaagtgtggggtactagcaacattaatgcgatttaacctccacttgtgtgatccaaagtgaggccatattg 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  43969746 tctttgattttcttcattttggtcacacacaagtgtggggtactagcaacattaatgcgatttaacctccacttgtgtgatccaaagtgaggcc------ 43969653  T
Q  234 atatcacataaactcttttgttttcaccaagtaaatacaattaataagtctcgtcaacttgaatatgactgaaatatcttttggcaaacatagggtgctt 333  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43969652 atatcacatagactcttttgttttcaccaagtaaatacaattaataagtctcgtcaacttgaatatgactgaaatatcttttggcaaacatagggtgctt 43969553  T
Q  334 tagcgtgcaaagataggattccgtttggtatccacaaatctttaatggtgaaaagggttagaaagtgtggnnnnnnncaagctcaagtgctcggctatca 433  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||    
T  43969552 tagcgtgcaaagataggattccgtttagtatccacaaatctttaatggtgaaaagggttagaaagtgtgcaaaaaaacaagctcaagtgctcggctatca 43969453  T
Q  434 aatcttccaatgtagtggtggtcatatcattacttacaataagttattcactaattgactttacataat 502  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  43969452 aatcttccaatgtaatggtggtcaaatcattacttacaataagttattcactaattgactttacataat 43969384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 694 - 1068
Target Start/End: Complemental strand, 43969251 - 43968881
Alignment:
Q  694 taattttagtatgttatcaacacatacgtagaagccttgcacattatcattttgaaagagcggtgtaatttatcatagaccttgaaatgttgtaatctat 793  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  43969251 taattttagtatgttatcaacacatacgtagaagccttgcacattatcattttgaaagagcggtgtaatttatcata-------aaatgttgtaatctat 43969159  T
Q  794 agtagaccttggaaataatgaagctcttcactaggataagatgtatatttgattattttcatatatctaacacatttaacttatgcgtaatcgaacccac 893  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||        ||||||| ||||||||||||| ||||||||||||||||||||    
T  43969158 agtagaccttggaa-taatgaagctcttcactaggataagatgtatattt--------tcatatacctaacacatttaaattatgcgtaatcgaacccac 43969068  T
Q  894 ttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtggactaattt 993  Q
    ||||||||||||||||||||||||||| ||| ||||||| ||||||| ||||||||||||| |||||||||||| |||||||||||| ||||||||||||    
T  43969067 ttgggttggcatgatggtattggcttggggcttaggagtgtgctcctccctgaggtctcagattcgattatctctggtgttaatttaggtggactaattt 43968968  T
Q  994 ---------------aaacttatgttgtaatcgatgttggagattactcgcttatagttgatcccaaaaatctgtttgtcaagtgtgaat 1068  Q
                   ||||||||| ||||||||||||  ||||||||||||||||||||||  |||||||||||||||||||| ||||||    
T  43968967 atcttcttaaaaaaaaaacttatg-tgtaatcgatgt--gagattactcgcttatagttgaatccaaaaatctgtttgtcaagcgtgaat 43968881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 531 - 634
Target Start/End: Complemental strand, 43969355 - 43969252
Alignment:
Q  531 cagcttattttggtggtctaagtaggcctcaactatttcctagtgtgtgtttggtttaacaatgataaacataaacccctacgtaacatgagtttggaga 630  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43969355 cagcttattttggtggtctaagtaggcctcaactatttcctagtgtgtgtttggtttaacaataataaacataaacccctacgtaacatgagtttggaga 43969256  T
Q  631 tctt 634  Q
    ||||    
T  43969255 tctt 43969252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 886 - 994
Target Start/End: Original strand, 968361 - 968469
Alignment:
Q  886 gaacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgg 985  Q
    ||||||||||| |||||| || ||||||||||||| | ||| ||||| ||||||| |  |||||||||||||||||| |||||| ||  |||||| ||||    
T  968361 gaacccacttgagttggcctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctccgatgccaatttaggtgg 968460  T
Q  986 actaattta 994  Q
     ||||||||    
T  968461 gctaattta 968469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 890 - 994
Target Start/End: Complemental strand, 11492146 - 11492042
Alignment:
Q  890 ccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtggacta 989  Q
    |||||||||||||||||  ||||||||||||||  || ||||| |||||||||  ||||||| |||||||||| ||| | |||| |||||  |||| |||    
T  11492146 ccacttgggttggcatgtcggtattggcttgagatctgggagtgtgctccttctcgaggtcttaggttcgattctcttcagtgtcaatttgggtgggcta 11492047  T
Q  990 attta 994  Q
    |||||    
T  11492046 attta 11492042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 887 - 994
Target Start/End: Original strand, 29431011 - 29431118
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||||||||||||||| ||  |||||||||||| | | | ||||| ||||||| | ||||| ||||||||||||| |||  |||| |||||| |||||     
T  29431011 aacccacttgggttggcctggcggtattggcttgggacttgggagtgtgctcctccttgaggcctcaggttcgattctctttggtgctaatttgagtggg 29431110  T
Q  987 ctaattta 994  Q
    ||||||||    
T  29431111 ctaattta 29431118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 887 - 994
Target Start/End: Original strand, 8484999 - 8485106
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||||||||||||||| || ||||||| ||||| | |||  |||| |||||||   ||||||||||  ||||||| |||||||||  |||||| ||||     
T  8484999 aacccacttgggttggcctggtggtatttgcttgggacctgtgagtgtgctcctctttgaggtctcattttcgattctctccggtgccaatttaggtggg 8485098  T
Q  987 ctaattta 994  Q
    ||||||||    
T  8485099 ctaattta 8485106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 887 - 962
Target Start/End: Original strand, 16852340 - 16852415
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgatt 962  Q
    ||||||||||||||||| |  ||||||||||||| | ||| ||||| ||||||| |  ||||||||||||||||||    
T  16852340 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgatt 16852415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 887 - 962
Target Start/End: Original strand, 28783060 - 28783135
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgatt 962  Q
    ||||||||||||||||| || ||||||||||||||| ||| ||||| ||||||| |   |||||||| ||||||||    
T  28783060 aacccacttgggttggcttggtggtattggcttgagacctgggagtgtgctcctcctcaaggtctcatgttcgatt 28783135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 945 - 995
Target Start/End: Complemental strand, 31087276 - 31087226
Alignment:
Q  945 gaggtctcaggttcgattatctccggtgttaatttaagtggactaatttaa 995  Q
    ||||||||||||||||||||||||||||| ||||||| | | |||||||||    
T  31087276 gaggtctcaggttcgattatctccggtgtcaatttaaataggctaatttaa 31087226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 889 - 994
Target Start/End: Original strand, 3624582 - 3624686
Alignment:
Q  889 cccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtggact 988  Q
    ||||||||||||||| |  ||||||||||||| | ||| ||||| |||||||     ||||||||||||||||| ||||||| || |||||| |||| ||    
T  3624582 cccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcttcaaggtctcaggttcgattctctccgg-gtcaatttaggtgggct 3624680  T
Q  989 aattta 994  Q
    ||||||    
T  3624681 aattta 3624686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 888 - 962
Target Start/End: Complemental strand, 29858124 - 29858050
Alignment:
Q  888 acccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgatt 962  Q
    |||||||||| ||||| || ||||||||||||| | ||  ||||| ||||||| |  ||||||||||||||||||    
T  29858124 acccacttggattggcctggtggtattggcttgggaccagggagtgtgctcctcctcgaggtctcaggttcgatt 29858050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 887 - 940
Target Start/End: Original strand, 6530807 - 6530860
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctcct 940  Q
    ||||||||||||||||| || |||| |||||||| | ||||||||| |||||||    
T  6530807 aacccacttgggttggcctggtggtgttggcttgggacctaggagtgtgctcct 6530860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 2e-18; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 890 - 994
Target Start/End: Complemental strand, 30510272 - 30510168
Alignment:
Q  890 ccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtggacta 989  Q
    |||||||||||| | || ||||| ||||||| | |||||||||||||||||||  |||||||||||||||||| ||||  |||| ||| ||||||| |||    
T  30510272 ccacttgggttgtcctggtggtactggcttgggacctaggagtatgctccttctcgaggtctcaggttcgattctctctagtgtcaatctaagtgggcta 30510173  T
Q  990 attta 994  Q
    |||||    
T  30510172 attta 30510168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 887 - 994
Target Start/End: Complemental strand, 10499185 - 10499078
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||||||||||||||| || ||||||||||||| |  || ||||| ||||| | | ||||||||||||||||||| |||||| ||| |||||  ||||     
T  10499185 aacccacttgggttggcctggtggtattggcttgggatctgggagtctgctcttccttgaggtctcaggttcgattctctccgatgtcaatttgggtggg 10499086  T
Q  987 ctaattta 994  Q
    ||||||||    
T  10499085 ctaattta 10499078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 887 - 994
Target Start/End: Complemental strand, 51903954 - 51903847
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||||| ||||||| | || ||||||||||||| |  || ||||| ||||||| |  | |||||||||||||||| |||||||||| ||||| |||||     
T  51903954 aacccacctgggttgacctgttggtattggcttgggatctgggagtgtgctcctcctcgtggtctcaggttcgattctctccggtgtcaatttgagtggg 51903855  T
Q  987 ctaattta 994  Q
    ||||||||    
T  51903854 ctaattta 51903847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 929 - 994
Target Start/End: Complemental strand, 45308936 - 45308871
Alignment:
Q  929 gagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtggactaattta 994  Q
    |||||||||||| |  |||||||||||||||||||||| | |||| |||| |||||||||||||||    
T  45308936 gagtatgctcctcctcgaggtctcaggttcgattatcttcagtgtcaattcaagtggactaattta 45308871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 887 - 994
Target Start/End: Complemental strand, 10445216 - 10445108
Alignment:
Q  887 aacccacttgggttggcatgatggta-ttggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgg 985  Q
    ||||||||||||||||| |  ||| | |||||||| | ||| ||||| ||||||| |  |||||||||||||||||| |||| |||| |||||| |||||    
T  10445216 aacccacttgggttggcctagtggcaattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctctggtgctaatttgagtgg 10445117  T
Q  986 actaattta 994  Q
     ||||||||    
T  10445116 gctaattta 10445108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 887 - 994
Target Start/End: Complemental strand, 31520681 - 31520574
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||||||||||||||| || ||| ||||||||| |  || ||||| ||||||| |  ||||||| ||||| |||| ||||| |||| ||||| |||||     
T  31520681 aacccacttgggttggcctggtggcattggcttgggatctgggagtgtgctcctcctcgaggtcttaggtttgattctctccagtgtcaatttgagtggg 31520582  T
Q  987 ctaattta 994  Q
    ||||||||    
T  31520581 ctaattta 31520574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 887 - 985
Target Start/End: Original strand, 14186648 - 14186745
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgg 985  Q
    ||||||||||||||||| |  |||||||| |||| | ||| ||||| ||||||| |   ||||||||||||||||| |||||||||| |||||| ||||    
T  14186648 aacccacttgggttggcctagtggtattgtcttgggacct-ggagtgtgctcctcctcaaggtctcaggttcgattctctccggtgtcaatttaggtgg 14186745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 894 - 994
Target Start/End: Original strand, 2667869 - 2667969
Alignment:
Q  894 ttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcct-gaggtctcaggttcgattatctccggtgttaatttaagtggactaatt 992  Q
    |||||||||| || ||||||||||||| |  || ||||| ||||| ||||| |||||||||||||||||||||||  |||| |||||| |||| ||| ||    
T  2667869 ttgggttggcctggtggtattggcttgggatctgggagtgtgctc-ttcctcgaggtctcaggttcgattatctctagtgtcaatttaggtgggctagtt 2667967  T
Q  993 ta 994  Q
    ||    
T  2667968 ta 2667969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 887 - 972
Target Start/End: Original strand, 8051214 - 8051299
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtg 972  Q
    ||||||||||||||||| || ||||||||||||| | ||| | |||||||| || |  ||||||||| ||||||||  ||||||||    
T  8051214 aacccacttgggttggcctggtggtattggcttgggacctggcagtatgcttctcctcgaggtctcaagttcgattccctccggtg 8051299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 945 - 993
Target Start/End: Original strand, 32639003 - 32639051
Alignment:
Q  945 gaggtctcaggttcgattatctccggtgttaatttaagtggactaattt 993  Q
    |||||||||||||||||| ||||| |||| ||||||||||| |||||||    
T  32639003 gaggtctcaggttcgattttctccagtgtcaatttaagtggcctaattt 32639051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 886 - 962
Target Start/End: Original strand, 53956383 - 53956459
Alignment:
Q  886 gaacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgatt 962  Q
    |||||||||||||||| | |||||| ||||||||| | ||  ||||| ||| ||||| |||||||||| ||||||||    
T  53956383 gaacccacttgggttgtcctgatggcattggcttgggacccgggagtgtgccccttcttgaggtctcatgttcgatt 53956459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 886 - 960
Target Start/End: Complemental strand, 2597297 - 2597223
Alignment:
Q  886 gaacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcga 960  Q
    |||||||||||||||||  || ||||||||||||  |   ||||||| ||||||| | |||||||||||||||||    
T  2597297 gaacccacttgggttggtctggtggtattggcttcggatttaggagtgtgctcctccttgaggtctcaggttcga 2597223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 887 - 996
Target Start/End: Original strand, 8170672 - 8170781
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    |||||| |||||||||| |  ||||||||||||||  | | ||||| ||||||| |   |||||||||||||||||  ||| ||||| |||||  ||||     
T  8170672 aacccatttgggttggcctagtggtattggcttgaaacttgggagtgtgctcctactcaaggtctcaggttcgatttcctctggtgtcaatttgggtggg 8170771  T
Q  987 ctaatttaaa 996  Q
    ||||||||||    
T  8170772 ctaatttaaa 8170781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 887 - 972
Target Start/End: Complemental strand, 15048137 - 15048052
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtg 972  Q
    ||||||||||||||||| | ||||||| |||||| |  || ||| | ||||||| |   |||||||||||||||||||||| ||||    
T  15048137 aacccacttgggttggcttaatggtataggcttgggatctgggaatgtgctcctcctcaaggtctcaggttcgattatctctggtg 15048052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 7e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 887 - 994
Target Start/End: Complemental strand, 30109384 - 30109278
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||||||||||||||| || ||||||||||||| | ||| ||||| ||||||| | |||||||||||||||||||  | |||||| ||||||| ||||     
T  30109384 aacccacttgggttggcttggtggtattggcttgtgacctgggagtgtgctcctccttgaggtctcaggttcgatt-cccccggtgctaatttaggtggg 30109286  T
Q  987 ctaattta 994  Q
    ||||||||    
T  30109285 ctaattta 30109278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 887 - 994
Target Start/End: Complemental strand, 22020938 - 22020831
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||| |||||||||||||  ||||||| ||||| |  || ||||| ||||||| | ||| ||||||| ||||||| ||||| ||||||||||| ||||     
T  22020938 aaccctcttgggttggcatagtggtattagcttgggatctgggagtgtgctcctccttgaagtctcagattcgattctctccagtgttaatttaggtggg 22020839  T
Q  987 ctaattta 994  Q
    ||||||||    
T  22020838 ctaattta 22020831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 887 - 994
Target Start/End: Complemental strand, 8278351 - 8278244
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||||||||||||||  |||||||||||||||| | | | ||||| ||||||| |  ||| ||||| ||| ||||||||||||||   ||||| ||||     
T  8278351 aacccacttgggttggtctgatggtattggcttgggacttgggagtgtgctcctcctcgagatctcaagtttgattatctccggtgccgatttaggtggg 8278252  T
Q  987 ctaattta 994  Q
    ||||||||    
T  8278251 ctaattta 8278244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 886 - 994
Target Start/End: Original strand, 16773806 - 16773914
Alignment:
Q  886 gaacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgg 985  Q
    ||||||||||| |||||  || |||||||| |||| | ||| ||||| ||||||| |  |||||||||||||||||| |||| | ||  |||||| ||||    
T  16773806 gaacccacttgagttggtctggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctctgatgccaatttaggtgg 16773905  T
Q  986 actaattta 994  Q
     ||||||||    
T  16773906 gctaattta 16773914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 886 - 962
Target Start/End: Original strand, 21589287 - 21589363
Alignment:
Q  886 gaacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgatt 962  Q
    |||||||||||||||||| || ||||||||||||| | ||| ||||| |||| || |  || |||||||||||||||    
T  21589287 gaacccacttgggttggcctggtggtattggcttgggacctgggagtctgctactcctcgatgtctcaggttcgatt 21589363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 926 - 994
Target Start/End: Original strand, 29173529 - 29173597
Alignment:
Q  926 taggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtggactaattta 994  Q
    ||||||| ||||||| |  ||||| ||||||||||||||||| ||||| |||||| |||| ||||||||    
T  29173529 taggagtgtgctcctcctcgaggtttcaggttcgattatctctggtgtcaatttaggtgggctaattta 29173597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 887 - 940
Target Start/End: Complemental strand, 18989077 - 18989024
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctcct 940  Q
    |||||||||||||| |||||||||| |||||||| | ||| ||||| |||||||    
T  18989077 aacccacttgggtttgcatgatggtgttggcttgggaccttggagtgtgctcct 18989024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 887 - 994
Target Start/End: Original strand, 25590611 - 25590718
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||||||||||||| | || |||||||||||||||  || ||||| ||||||| |  |||||||| ||||||||| ||| |||||| ||||| |||||     
T  25590611 aacccacttgggttgacctgttggtattggcttgagatctgggagtgtgctcctcctcgaggtctcgggttcgattttcttcggtgtcaatttgagtggg 25590710  T
Q  987 ctaattta 994  Q
    ||||||||    
T  25590711 ctaattta 25590718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 887 - 965
Target Start/End: Original strand, 48771938 - 48772016
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatc 965  Q
    ||||||||||||||||| || ||||||||||||| |  || ||||| ||||||| | ||||||||||||||||||||||    
T  48771938 aacccacttgggttggcttggtggtattggcttgggatctgggagtgtgctcctccttgaggtctcaggttcgattatc 48772016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 887 - 994
Target Start/End: Original strand, 30579335 - 30579442
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||||||||||||||| || ||||||||||||||| ||| ||||| | | ||| |   ||||||||||||||||| |||| ||||  |||||| ||||     
T  30579335 aacccacttgggttggcctggtggtattggcttgagacctgggagtgtccacctcctcaaggtctcaggttcgattttctctggtgccaatttaggtggg 30579434  T
Q  987 ctaattta 994  Q
    ||||||||    
T  30579435 ctaattta 30579442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 908 - 994
Target Start/End: Complemental strand, 45229080 - 45228994
Alignment:
Q  908 tggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtggactaattta 994  Q
    ||||||||| ||| | ||||||||| |||| |||| |||||| | |||||||||| ||||| |||| ||||||||||| ||||||||    
T  45229080 tggtattggtttgggacctaggagtgtgcttcttcttgaggttttaggttcgattctctccagtgtcaatttaagtgggctaattta 45228994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 887 - 995
Target Start/End: Complemental strand, 23301678 - 23301570
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||||||||||||||| || |||||||| |||| | | | ||||| ||||||| | |||||||||| ||| |||| |||   ||| |||||| ||||||    
T  23301678 aacccacttgggttggcctggtggtattgacttgggacttgggagtgtgctcctccttgaggtctcaagtttgattctctttagtgctaatttgagtgga 23301579  T
Q  987 ctaatttaa 995  Q
    |||||||||    
T  23301578 ctaatttaa 23301570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 890 - 994
Target Start/End: Complemental strand, 43663168 - 43663064
Alignment:
Q  890 ccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtggacta 989  Q
    |||||||||||||| ||||||||||| |||| | ||||||||  || |||| |  ||| |||||||||||| | |||||||| | |||||  ||||||||    
T  43663168 ccacttgggttggcctgatggtattgacttgggacctaggagcgtggtcctcctcgagatctcaggttcgaatctctccggtatcaatttgggtggacta 43663069  T
Q  990 attta 994  Q
    |||||    
T  43663068 attta 43663064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 887 - 994
Target Start/End: Original strand, 2446308 - 2446415
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||||||||||||||  |||||||||||||||| | | | ||||| ||||||| |  ||| ||||| |||||||| |||||||||   ||||| ||||     
T  2446308 aacccacttgggttggtctgatggtattggcttgggacttgggagtgtgctcctcctcgagatctcaagttcgattctctccggtgccgatttaggtggg 2446407  T
Q  987 ctaattta 994  Q
    ||||||||    
T  2446408 ctaattta 2446415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 887 - 972
Target Start/End: Complemental strand, 26459486 - 26459401
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtg 972  Q
    ||||||||||||||||| |  ||||||||||||| | ||| ||||| ||||||| |   ||||||||||||||||| |||| ||||    
T  26459486 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtg 26459401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 890 - 962
Target Start/End: Complemental strand, 15905746 - 15905675
Alignment:
Q  890 ccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgatt 962  Q
    |||||||||||||| ||  |||||||||||| | ||| ||||| |||||| |||| |||||||||||||||||    
T  15905746 ccacttgggttggcctggcggtattggcttgggacctgggagtgtgctcc-tccttaggtctcaggttcgatt 15905675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 887 - 979
Target Start/End: Complemental strand, 33869521 - 33869429
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaattt 979  Q
    ||||||||||||||||| |  | ||||||||||||| ||| | ||| |||||||||   ||||||| ||||||||| |||| ||||| |||||    
T  33869521 aacccacttgggttggcctagtagtattggcttgagacctggaagtgtgctccttctcaaggtctctggttcgattctctctggtgtcaattt 33869429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 887 - 967
Target Start/End: Original strand, 39631844 - 39631924
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctc 967  Q
    ||||||||||||||||| |  ||||||||||||| | ||| |||||| |||||| |   ||||||||||||||||| ||||    
T  39631844 aacccacttgggttggcctagtggtattggcttgggacctgggagtaagctcctcctcaaggtctcaggttcgattctctc 39631924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 907 - 994
Target Start/End: Complemental strand, 5668627 - 5668540
Alignment:
Q  907 atggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtggactaattta 994  Q
    |||||||||||||| | | | | ||| ||||||| |  ||||||||||| |||||| ||||||| ||||||||| |||| ||||||||    
T  5668627 atggtattggcttgggacatggaagtgtgctcctcctcgaggtctcaggatcgattctctccggagttaatttatgtgggctaattta 5668540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 887 - 958
Target Start/End: Complemental strand, 48039723 - 48039652
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttc 958  Q
    ||||||||||||||||| || |||| |||||||| |  || |||||||||||||||   |||||||||||||    
T  48039723 aacccacttgggttggcctggtggtgttggcttgcgatcttggagtatgctccttcgcaaggtctcaggttc 48039652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 952 - 994
Target Start/End: Original strand, 22035463 - 22035505
Alignment:
Q  952 caggttcgattatctccggtgttaatttaagtggactaattta 994  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||    
T  22035463 caggttcgattctctcctgtgtcaatttaagtggactaattta 22035505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 887 - 965
Target Start/End: Original strand, 31835192 - 31835270
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatc 965  Q
    ||||||||||||||||| || |||| |||||||| |  || ||||| ||||||| |   ||||||||||||||||||||    
T  31835192 aacccacttgggttggcctggtggtgttggcttgggtgcttggagtgtgctcctcctcaaggtctcaggttcgattatc 31835270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 994
Target Start/End: Complemental strand, 41519144 - 41519079
Alignment:
Q  929 gagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtggactaattta 994  Q
    |||| |||||||||   ||||||||| |||||||||||||||||| |||||  |||| ||||||||    
T  41519144 gagtgtgctccttctcaaggtctcagattcgattatctccggtgtcaatttgggtgggctaattta 41519079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 945 - 994
Target Start/End: Original strand, 48079701 - 48079750
Alignment:
Q  945 gaggtctcaggttcgattatctccggtgttaatttaagtggactaattta 994  Q
    ||||||||||||| |||| ||||||||| |||||| ||||| ||||||||    
T  48079701 gaggtctcaggtttgattctctccggtgctaatttgagtgggctaattta 48079750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 887 - 994
Target Start/End: Original strand, 16893394 - 16893501
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||||||||||||| | || |||||||||||||||   | ||||| | ||||| |  |||||||||||||||||| |||||||||| ||||| |||||     
T  16893394 aacccacttgggttgacctgttggtattggcttgagatttgggagtgtactcctcctcgaggtctcaggttcgattttctccggtgtcaatttgagtggg 16893493  T
Q  987 ctaattta 994  Q
    ||||||||    
T  16893494 ctaattta 16893501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 887 - 979
Target Start/End: Original strand, 40257399 - 40257491
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaattt 979  Q
    ||||||||||||||||| || ||||||||||||||| ||| ||||| ||||||| |  ||||||||| |||| ||| | |||||||| |||||    
T  40257399 aacccacttgggttggcctggtggtattggcttgagacctgggagtgtgctcctcctcgaggtctcaagttcaattctatccggtgtcaattt 40257491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 894 - 994
Target Start/End: Complemental strand, 42983443 - 42983343
Alignment:
Q  894 ttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtggactaattt 993  Q
    ||||||||||||| |||||||| ||||||  || ||||| || |||| | |||||||  |||||||||| |||| ||||  |||||||||||||||||||    
T  42983443 ttgggttggcatggtggtattgacttgagatctgggagtgtggtcctccttgaggtccgaggttcgattctctcaggtgccaatttaagtggactaattt 42983344  T
Q  994 a 994  Q
    |    
T  42983343 a 42983343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 887 - 994
Target Start/End: Original strand, 51814494 - 51814601
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||||||||||||||| ||||||||||| ||||||  ||  |||| ||||||| |   ||||||||||||||||| |||||||||  |||||  ||||     
T  51814494 aacccacttgggttggcctgatggtattgacttgagatctgagagtgtgctcctcctcaaggtctcaggttcgattctctccggtgccaatttgggtggg 51814593  T
Q  987 ctaattta 994  Q
    ||||||||    
T  51814594 ctaattta 51814601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 949 - 995
Target Start/End: Complemental strand, 48619223 - 48619177
Alignment:
Q  949 tctcaggttcgattatctccggtgttaatttaagtggactaatttaa 995  Q
    |||||||||| |||||||||||||| ||||| |||||||||||||||    
T  48619223 tctcaggttctattatctccggtgtcaatttgagtggactaatttaa 48619177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 887 - 971
Target Start/End: Complemental strand, 19528403 - 19528319
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggt 971  Q
    ||||||||||||||||| || ||||||||||||| |  ||| |||| ||||||| |   ||||||||||||||||| || |||||    
T  19528403 aacccacttgggttggcctggtggtattggcttgggatctatgagtgtgctcctcctcaaggtctcaggttcgattctccccggt 19528319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 948 - 994
Target Start/End: Original strand, 12993956 - 12994002
Alignment:
Q  948 gtctcaggttcgattatctccggtgttaatttaagtggactaattta 994  Q
    |||||||||||||||||||| |||| ||||||  |||||||||||||    
T  12993956 gtctcaggttcgattatctctggtgctaattttggtggactaattta 12994002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 887 - 985
Target Start/End: Complemental strand, 19940948 - 19940850
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgg 985  Q
    ||||||||||||||||  || |||| || ||||| | ||| ||||| ||||||| | | |||||||||||| |||| |||||||||  |||||| ||||    
T  19940948 aacccacttgggttggtctggtggtgttagcttgggtccttggagtgtgctcctccttaaggtctcaggtttgattctctccggtgccaatttatgtgg 19940850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 908 - 962
Target Start/End: Complemental strand, 52029992 - 52029938
Alignment:
Q  908 tggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgatt 962  Q
    |||||||| |||||| ||||||||| |||||||||   |||||||||||||||||    
T  52029992 tggtattgacttgagacctaggagtgtgctccttctcaaggtctcaggttcgatt 52029938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 893 - 994
Target Start/End: Original strand, 43445969 - 43446070
Alignment:
Q  893 cttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtggactaatt 992  Q
    ||||||||||| ||||||| |||||||| | ||| ||||| ||||||| |   |||||||| |||||||| || ||||||  ||||| ||||| ||| ||    
T  43445969 cttgggttggcttgatggtgttggcttgggtccttggagtgtgctcctcctcaaggtctcatgttcgattctccccggtgccaatttgagtgggctagtt 43446068  T
Q  993 ta 994  Q
    ||    
T  43446069 ta 43446070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 887 - 979
Target Start/End: Complemental strand, 19923 - 19831
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaattt 979  Q
    ||||||||||  |||||||||||||||||||||| |  || ||||| ||||||| | |||||||||| |||||||| | |||| |||||||||    
T  19923 aacccacttgaattggcatgatggtattggcttgggatctgggagtctgctcctccttgaggtctcaagttcgattctttccgatgttaattt 19831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 887 - 994
Target Start/End: Complemental strand, 15399 - 15292
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||||||||||||||  || ||||||||||||| | ||| ||||| ||||||| |  |||||||||||||||||| |||| | ||  |||||| ||||     
T  15399 aacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctcggatgccaatttaggtggg 15300  T
Q  987 ctaattta 994  Q
    ||||||||    
T  15299 ctaattta 15292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 891 - 962
Target Start/End: Complemental strand, 10338246 - 10338175
Alignment:
Q  891 cacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgatt 962  Q
    |||||||||||||||| ||||||||||||| | ||||||||| ||||||| |   |||||||||||||||||    
T  10338246 cacttgggttggcatggtggtattggcttgggacctaggagtgtgctcctcctcaaggtctcaggttcgatt 10338175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 887 - 980
Target Start/End: Complemental strand, 12234583 - 12234490
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaattta 980  Q
    ||||||||| ||||||| || |||||||| |||| | ||| ||||| |||||| ||  |||||||||||||||||| ||||| |||| ||||||    
T  12234583 aacccacttaggttggcctggtggtattgacttgggacctgggagtgtgctccctctcgaggtctcaggttcgattctctccagtgtcaattta 12234490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 887 - 967
Target Start/End: Original strand, 33549104 - 33549184
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctc 967  Q
    ||||||||||||||||  || ||||||||||||| | ||| ||||| ||||||| |  |||||||||||||||||| ||||    
T  33549104 aacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctc 33549184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 924 - 995
Target Start/End: Original strand, 17736743 - 17736814
Alignment:
Q  924 cctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtggactaatttaa 995  Q
    ||||||||| || | || |||||||| |||||||||||||| |||||| | ||||||||||| |||||||||    
T  17736743 cctaggagtgtgtttctccctgaggtttcaggttcgattatttccggtatcaatttaagtgggctaatttaa 17736814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 887 - 972
Target Start/End: Original strand, 30127400 - 30127485
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtg 972  Q
    ||||||||||||||||  || ||||||||||||| || || ||||| |||||||    |||||||||||||||||| | |||||||    
T  30127400 aacccacttgggttggtctggtggtattggcttggggtctgggagtgtgctcctcttcgaggtctcaggttcgattctttccggtg 30127485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 889 - 994
Target Start/End: Complemental strand, 32613214 - 32613109
Alignment:
Q  889 cccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtggact 988  Q
    ||||||||||||||| || |||||||| |||| || || ||||| |||||||||   || ||||| |||||||| ||| | |||| ||||||| ||||||    
T  32613214 cccacttgggttggcctggtggtattgacttggggtctgggagtgtgctccttctcaagatctcatgttcgattctcttcagtgtcaatttaaatggact 32613115  T
Q  989 aattta 994  Q
    | ||||    
T  32613114 agttta 32613109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 887 - 994
Target Start/End: Complemental strand, 31623067 - 31622960
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||||||||||||||   | ||||||||||||| | ||| ||||| ||||||| |  ||||||||||||| || |  ||||||||| |||||  ||||     
T  31623067 aacccacttgggttggtccggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggtttgaatcactccggtgtcaatttgggtggg 31622968  T
Q  987 ctaattta 994  Q
    ||||||||    
T  31622967 ctaattta 31622960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 908 - 994
Target Start/End: Original strand, 6385883 - 6385969
Alignment:
Q  908 tggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtggactaattta 994  Q
    |||||||| |||| | ||| ||| | ||||||| | | ||||||||||||||||| ||||||||| ||||||  |||| ||||||||    
T  6385883 tggtattgacttgggacctgggactgtgctcctccttaaggtctcaggttcgattctctccggtgctaatttgggtgggctaattta 6385969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 887 - 962
Target Start/End: Complemental strand, 55427276 - 55427201
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgatt 962  Q
    ||||||||||||||||| || ||||||||||||| | ||| ||||| ||||||| |  ||||||||||||||||||    
T  55427276 aacccacttgggttggcctggtggtattggcttgggacctgggagtctgctcctgctcgaggtctcaggttcgatt 55427201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 934 - 995
Target Start/End: Original strand, 32662801 - 32662862
Alignment:
Q  934 tgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtggactaatttaa 995  Q
    ||||||| | ||||||||||||||||||| ||| |||||| ||||||||||| |||||||||    
T  32662801 tgctcctccttgaggtctcaggttcgattttcttcggtgtcaatttaagtgggctaatttaa 32662862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 890 - 962
Target Start/End: Complemental strand, 41347036 - 41346964
Alignment:
Q  890 ccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgatt 962  Q
    |||||||||||||| |||||||||||| |||||  || ||||||||||||| |  || |||||||||||||||    
T  41347036 ccacttgggttggcctgatggtattggtttgagatctgggagtatgctcctcctcgaagtctcaggttcgatt 41346964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 887 - 995
Target Start/End: Original strand, 51948480 - 51948588
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||||||||||||| | || | |||||| |||| |  |||||||| ||| ||| |  |||||||||||||| ||| ||||| |||| ||||||| ||||    
T  51948480 aacccacttgggttgtcctggtagtattgacttgggatctaggagtgtgcccctcctcgaggtctcaggttcaattctctccagtgtcaatttaaatgga 51948579  T
Q  987 ctaatttaa 995  Q
    |||||||||    
T  51948580 ctaatttaa 51948588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 887 - 994
Target Start/End: Complemental strand, 7949530 - 7949423
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    |||||||||||| |||| |   |||||||||||| | ||| ||||| ||||||| |   ||||||||||||||||| |||| ||||| |||||| ||||     
T  7949530 aacccacttgggctggcctagcggtattggcttgggacctcggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgtcaatttaggtggg 7949431  T
Q  987 ctaattta 994  Q
    ||||||||    
T  7949430 ctaattta 7949423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 928 - 994
Target Start/End: Original strand, 51954155 - 51954221
Alignment:
Q  928 ggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtggactaattta 994  Q
    ||||||||||||| |  ||||||||||||| ||||||||||||||| |||||  |||| ||||||||    
T  51954155 ggagtatgctcctcctcgaggtctcaggtttgattatctccggtgtcaatttgggtgggctaattta 51954221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 887 - 972
Target Start/End: Complemental strand, 37109427 - 37109342
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtg 972  Q
    ||||||||||||||||| |  ||||||||||||| | ||| ||||| ||||||| |   ||||||||||||||||| |||| ||||    
T  37109427 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtg 37109342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 945 - 994
Target Start/End: Complemental strand, 46174402 - 46174353
Alignment:
Q  945 gaggtctcaggttcgattatctccggtgttaatttaagtggactaattta 994  Q
    |||||||||||||||||| ||||||||||||||||   ||||||||||||    
T  46174402 gaggtctcaggttcgattttctccggtgttaatttggatggactaattta 46174353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 887 - 971
Target Start/End: Complemental strand, 19238653 - 19238569
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggt 971  Q
    ||||||||||||||||| || ||||||||||||| | | | ||||| ||||||| |  |||||||| ||||||||| || |||||    
T  19238653 aacccacttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcgaggtctcgggttcgattctccccggt 19238569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 887 - 994
Target Start/End: Complemental strand, 21660220 - 21660113
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcct-gaggtctcaggttcgattatctccggtgttaatttaagtgg 985  Q
    |||| |||||||||||  || |||||||| ||||||  || ||||| ||||| ||||| ||||||||| |||||||||||||  |||| |||||| || |    
T  21660220 aaccaacttgggttggtctggtggtattgacttgagatctgggagtgtgctc-ttcctcgaggtctcaagttcgattatctctagtgtcaatttaggtag 21660122  T
Q  986 actaattta 994  Q
    |||||||||    
T  21660121 actaattta 21660113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 887 - 994
Target Start/End: Complemental strand, 21668984 - 21668877
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcct-gaggtctcaggttcgattatctccggtgttaatttaagtgg 985  Q
    |||| |||||||||||  || |||||||| ||||||  || ||||| ||||| ||||| ||||||||| |||||||||||||  |||| |||||| || |    
T  21668984 aaccaacttgggttggtctggtggtattgacttgagatctgggagtgtgctc-ttcctcgaggtctcaagttcgattatctctagtgtcaatttaggtag 21668886  T
Q  986 actaattta 994  Q
    |||||||||    
T  21668885 actaattta 21668877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 887 - 994
Target Start/End: Complemental strand, 37274536 - 37274428
Alignment:
Q  887 aacccacttgggttggcatgatggta-ttggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgg 985  Q
    ||||||||||||||||| |  | ||| |||||||| | ||| ||||| ||||||| |   |||||| |||||||||| |||| |||| ||||||||||||    
T  37274536 aacccacttgggttggcctagtcgtaattggcttgggacctgggagtgtgctcctcctcaaggtcttaggttcgattctctctggtgctaatttaagtgg 37274437  T
Q  986 actaattta 994  Q
     ||||||||    
T  37274436 gctaattta 37274428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 889 - 920
Target Start/End: Complemental strand, 40284060 - 40284029
Alignment:
Q  889 cccacttgggttggcatgatggtattggcttg 920  Q
    ||||||||||||||||||||||||||||||||    
T  40284060 cccacttgggttggcatgatggtattggcttg 40284029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 887 - 994
Target Start/End: Original strand, 46545711 - 46545818
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||||||||||||||| |  ||||||||||||||| |||  |||| ||||||| |   || |||||| ||||||| |||| | ||| ||||||  ||||    
T  46545711 aacccacttgggttggcctagtggtattggcttgagacctgagagtgtgctcctcctcaagatctcagattcgattttctctgatgtcaatttagatgga 46545810  T
Q  987 ctaattta 994  Q
    ||||||||    
T  46545811 ctaattta 46545818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 886 - 959
Target Start/End: Original strand, 17618280 - 17618353
Alignment:
Q  886 gaacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcg 959  Q
    |||||||||||||  ||| || ||||||||||||||| ||| ||||| ||||||| |  ||||||||| |||||    
T  17618280 gaacccacttgggccggcttggtggtattggcttgagacctgggagtgtgctcctcctcgaggtctcatgttcg 17618353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 891 - 994
Target Start/End: Original strand, 3001383 - 3001486
Alignment:
Q  891 cacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtggactaa 990  Q
    ||||||||||||| |  |||||||| ||||||  |||||||| ||||||| | |||| ||||||||||||||||||| ||||  | |||| |||| ||||    
T  3001383 cacttgggttggcctagtggtattgacttgagatctaggagtgtgctcctccttgagatctcaggttcgattatctctggtgccagtttatgtgggctaa 3001482  T
Q  991 ttta 994  Q
    ||||    
T  3001483 ttta 3001486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 887 - 994
Target Start/End: Original strand, 19016031 - 19016138
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||||||||||||||  |||||||||||||||||| | | ||||| ||||||| |  ||||||||| ||| |||| || ||||||  ||||||||| |     
T  19016031 aacccacttgggttggtctgatggtattggcttgagacttgggagtgtgctcctcctcgaggtctcaagtttgattctccccggtgccaatttaagtagg 19016130  T
Q  987 ctaattta 994  Q
    ||||||||    
T  19016131 ctaattta 19016138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 887 - 962
Target Start/End: Original strand, 39714992 - 39715067
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgatt 962  Q
    |||||||||||||||||||| |||||||| |||| | ||| ||||| ||||||| |  ||||||||||||||||||    
T  39714992 aacccacttgggttggcatggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgatt 39715067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 945 - 993
Target Start/End: Complemental strand, 33569876 - 33569828
Alignment:
Q  945 gaggtctcaggttcgattatctccggtgttaatttaagtggactaattt 993  Q
    |||||||||||||||||| |||| |||| ||||||||||||||||||||    
T  33569876 gaggtctcaggttcgattctctctggtgctaatttaagtggactaattt 33569828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 886 - 994
Target Start/End: Complemental strand, 42327472 - 42327364
Alignment:
Q  886 gaacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgg 985  Q
    |||||||||||||||||| |  ||||||||||||| | ||| ||||| ||||||| |   ||||||||||||||||| ||| |||||  |||||  ||||    
T  42327472 gaacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctcttcggtgccaatttgggtgg 42327373  T
Q  986 actaattta 994  Q
     ||||||||    
T  42327372 gctaattta 42327364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 887 - 994
Target Start/End: Original strand, 29503271 - 29503377
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||||||||||||||| |  ||||||||| ||| | ||| ||||| ||||||| |   ||||||||||||||||| || ||||||| |||||||||||     
T  29503271 aacccacttgggttggcctagtggtattggtttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctc-ccggtgtcaatttaagtggg 29503369  T
Q  987 ctaattta 994  Q
    | ||||||    
T  29503370 caaattta 29503377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 887 - 994
Target Start/End: Original strand, 42602554 - 42602661
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||||||||||||||| |  ||||||||||||| | ||| ||||| |||||||||   |||||| ||||| |||| |||||||||  |||||  ||||     
T  42602554 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctccttctcaaggtcttaggtttgattctctccggtgccaatttgggtggg 42602653  T
Q  987 ctaattta 994  Q
    ||||||||    
T  42602654 ctaattta 42602661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 887 - 972
Target Start/End: Complemental strand, 40416466 - 40416381
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtg 972  Q
    ||||||||||||||||| |  |||||||| ||||   ||| ||||||||||||| | | ||||||||||||||||| |||| ||||    
T  40416466 aacccacttgggttggcctagtggtattgacttggaacctgggagtatgctcctccttaaggtctcaggttcgattctctctggtg 40416381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 886 - 962
Target Start/End: Original strand, 26482092 - 26482167
Alignment:
Q  886 gaacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgatt 962  Q
    |||||||||| ||||||| ||||||| |||||||| | ||||||||| |||||||  |  |||||||||||||||||    
T  26482092 gaacccacttaggttggcctgatggtgttggcttgggacctaggagtgtgctcctctca-aggtctcaggttcgatt 26482167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 887 - 995
Target Start/End: Complemental strand, 29197452 - 29197344
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||||||||||||||| || |||||||| |||| | | | ||||| ||||||| | ||| |||||| |||||||| |  ||||||  |||||| ||||     
T  29197452 aacccacttgggttggcttggtggtattgacttgggacttgggagtgtgctcctccttgatgtctcatgttcgattcttcccggtgccaatttaggtggg 29197353  T
Q  987 ctaatttaa 995  Q
    |||||||||    
T  29197352 ctaatttaa 29197344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 887 - 971
Target Start/End: Original strand, 37480075 - 37480159
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggt 971  Q
    ||||||||||||||||| || ||||||||||||| | |||  |||| ||||||| |   ||||||||||||||||| || |||||    
T  37480075 aacccacttgggttggcctggtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgattctccccggt 37480159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 890 - 993
Target Start/End: Original strand, 2311724 - 2311830
Alignment:
Q  890 ccacttgggttggcatgatggtattggcttgaggcctaggagtatgctcct--tcct-gaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    |||||| ||||| | || |||||||||||||||  || ||||| | |||||  |||| |||||||||||||||||| ||| |||||| ||||| |||||     
T  2311724 ccacttaggttgacttgttggtattggcttgagatctgggagtgtactcctcctcctcgaggtctcaggttcgattttcttcggtgtcaatttgagtggg 2311823  T
Q  987 ctaattt 993  Q
    |||||||    
T  2311824 ctaattt 2311830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 887 - 994
Target Start/End: Complemental strand, 7799111 - 7799005
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||||||||||||| | || ||||||||||||| | | | ||||| ||||||| |  ||| |||||| ||||||| ||||| |||  |||||||||||     
T  7799111 aacccacttgggttgtcctggtggtattggcttgggacttgggagtgtgctcctcctcgagatctcagattcgattctctccagtgccaatttaagtgg- 7799013  T
Q  987 ctaattta 994  Q
    ||||||||    
T  7799012 ctaattta 7799005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 887 - 994
Target Start/End: Original strand, 19244109 - 19244216
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||||||||||||||  |  |||||||| |||| | |||  |||| ||||||| ||  ||||||||||||||||| |||| ||||  ||||| |||||     
T  19244109 aacccacttgggttggtctactggtattgacttgggacctgagagtgtgctcctccccaaggtctcaggttcgattctctctggtgccaatttgagtggg 19244208  T
Q  987 ctaattta 994  Q
    ||||||||    
T  19244209 ctaattta 19244216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 891 - 982
Target Start/End: Original strand, 24191842 - 24191933
Alignment:
Q  891 cacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaag 982  Q
    |||||| |||||| |||||||||||||||| | |||  |||| ||||||| | |||| ||||| | |||||| || ||||||| ||||||||    
T  24191842 cacttgagttggcctgatggtattggcttgggacctgagagtgtgctcctccttgagatctcatgatcgattctccccggtgtcaatttaag 24191933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 895 - 985
Target Start/End: Original strand, 21213777 - 21213867
Alignment:
Q  895 tgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgg 985  Q
    ||||||||  || ||||||||||||| | ||| ||||| || |||| | ||||||||||||||||||| || ||||||  |||||| ||||    
T  21213777 tgggttggtctggtggtattggcttgggacctgggagtgtgttcctccttgaggtctcaggttcgattctccccggtgccaatttaggtgg 21213867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 929 - 995
Target Start/End: Complemental strand, 31573675 - 31573609
Alignment:
Q  929 gagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtggactaatttaa 995  Q
    |||| ||||||| | ||| ||||||||||||||| ||| || ||| |||||| ||||||||||||||    
T  31573675 gagtgtgctcctccttgatgtctcaggttcgattctcttcgatgtcaatttaggtggactaatttaa 31573609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 908 - 994
Target Start/End: Complemental strand, 41504991 - 41504905
Alignment:
Q  908 tggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtggactaattta 994  Q
    ||||||||||||| | ||| ||||||||||||| |  ||  |||| | ||||||| |||||||||| |||||||||||  |||||||    
T  41504991 tggtattggcttgggacctgggagtatgctcctcctcgatatctccgattcgattctctccggtgtcaatttaagtgggttaattta 41504905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 889 - 994
Target Start/End: Complemental strand, 12086203 - 12086098
Alignment:
Q  889 cccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtggact 988  Q
    |||||||  |||||| || ||||||||||||| | ||| | ||| ||||||| |   ||||||| |||||||||  |||||||| ||||||| |||| ||    
T  12086203 cccacttaagttggcctggtggtattggcttgggacctggaagtgtgctcctcctcaaggtctcgggttcgattccctccggtgctaatttaggtgggct 12086104  T
Q  989 aattta 994  Q
    ||||||    
T  12086103 aattta 12086098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 994
Target Start/End: Original strand, 33582015 - 33582080
Alignment:
Q  929 gagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtggactaattta 994  Q
    |||| ||||||| | ||||||||||||||||||| ||||   ||| |||||| |||||||||||||    
T  33582015 gagtgtgctcctccttgaggtctcaggttcgattctctctaatgtcaatttaggtggactaattta 33582080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 887 - 972
Target Start/End: Complemental strand, 41908714 - 41908629
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtg 972  Q
    ||||||||||||||||| || |||| | || ||||| ||| ||||| ||||||| |   |||||||| ||||||||||| ||||||    
T  41908714 aacccacttgggttggcctggtggtgtcggtttgagaccttggagtgtgctcctcctcaaggtctcaagttcgattatccccggtg 41908629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 908 - 979
Target Start/End: Complemental strand, 25402 - 25331
Alignment:
Q  908 tggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaattt 979  Q
    ||||||||||||||| | | ||||| |||||||||   |||||||||||||||||||||| ||||| |||||    
T  25402 tggtattggcttgagacttgggagtgtgctccttctcaaggtctcaggttcgattatctctggtgtcaattt 25331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 887 - 994
Target Start/End: Complemental strand, 41709 - 41602
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||||||||||||||| |  |||||||||||||||  ||  |||||||||||| |  |||||||||||||| ||| |||| | ||| |||||  ||||     
T  41709 aacccacttgggttggcctagtggtattggcttgagatctgagagtatgctcctcctcgaggtctcaggttcaattctctctgatgtcaatttgggtggg 41610  T
Q  987 ctaattta 994  Q
    ||||||||    
T  41609 ctaattta 41602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 887 - 994
Target Start/End: Original strand, 112282 - 112389
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||||||||||||||| || | |||||||||||    || ||||| || ||||   |||||||| |||||||||| |||||||||  |||||| |||||    
T  112282 aacccacttgggttggcctggttgtattggcttggaatctgggagtgtggtcctctttgaggtctgaggttcgattctctccggtgccaatttaggtgga 112381  T
Q  987 ctaattta 994  Q
    ||||||||    
T  112382 ctaattta 112389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 893 - 979
Target Start/End: Original strand, 11534 - 11620
Alignment:
Q  893 cttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaattt 979  Q
    |||||| |||| || ||||||||||||| |  || ||||| ||||||| |  |||||||||||||||||| |||| |||||||||||    
T  11534 cttgggatggcctggtggtattggcttgggatctgggagtgtgctcctcctcgaggtctcaggttcgattctctctggtgttaattt 11620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 890 - 992
Target Start/End: Complemental strand, 38975 - 38873
Alignment:
Q  890 ccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtggacta 989  Q
    |||||||||||||  || ||||||||||||| | ||||||||||||||| |   | || ||||| |||||||| |||||||||| ||||| | ||||| |    
T  38975 ccacttgggttggtctggtggtattggcttgggacctaggagtatgctcatctttaagatctcacgttcgattttctccggtgtcaatttgaatggacga 38876  T
Q  990 att 992  Q
    |||    
T  38875 att 38873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 894 - 983
Target Start/End: Complemental strand, 6647 - 6558
Alignment:
Q  894 ttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagt 983  Q
    |||||||||  ||||| |||||| |||||   || |||| ||||||||| ||| || ||||||||||||||||||| ||| |||||||||    
T  6647 ttgggttggtttgatgatattggtttgagatttaagagtgtgctccttcttgaagtttcaggttcgattatctccgatgtcaatttaagt 6558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 887 - 995
Target Start/End: Original strand, 24053 - 24161
Alignment:
Q  887 aacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtgga 986  Q
    ||||||||||||||||| | ||||||||| |||| | | ||||||| |||||||    || || ||||||||||||||||| | ||  ||||| |||||     
T  24053 aacccacttgggttggcctaatggtattgacttgggacttaggagtgtgctcctcttcgaagtgtcaggttcgattatctctgatgccaatttgagtggg 24152  T
Q  987 ctaatttaa 995  Q
    |||||||||    
T  24153 ctaatttaa 24161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 891 - 979
Target Start/End: Complemental strand, 13118 - 13030
Alignment:
Q  891 cacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaattt 979  Q
    ||||| ||||||| || |||||||||||||||  || ||||| ||||||| |   ||||||||||||||||| |||||| ||| |||||    
T  13118 cacttcggttggcttggtggtattggcttgagatctgggagtgtgctcctcctcaaggtctcaggttcgattctctccgatgtcaattt 13030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 908 - 979
Target Start/End: Complemental strand, 20017 - 19946
Alignment:
Q  908 tggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaattt 979  Q
    |||||||||||||   ||| ||||||||||||| |   ||||||||||||||||| |||| |||||||||||    
T  20017 tggtattggcttggaacctgggagtatgctcctcctcaaggtctcaggttcgattctctctggtgttaattt 19946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 945 - 995
Target Start/End: Original strand, 49364 - 49414
Alignment:
Q  945 gaggtctcaggttcgattatctccggtgttaatttaagtggactaatttaa 995  Q
    ||||| |||||||||||| |||||||||| |||||||||||  ||||||||    
T  49364 gaggtatcaggttcgattctctccggtgtcaatttaagtgggttaatttaa 49414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0955 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0955
Description:

Target: scaffold0955; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 890 - 979
Target Start/End: Original strand, 3466 - 3554
Alignment:
Q  890 ccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaattt 979  Q
    ||||||||||||||  | ||||||||||||| | ||||| ||||||||| ||  | || ||||| |||||||| |||||||||| |||||    
T  3466 ccacttgggttggccgggtggtattggcttgggacctagaagtatgctcatt-ttaagatctcacgttcgattttctccggtgtcaattt 3554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 886 - 979
Target Start/End: Complemental strand, 15048 - 14956
Alignment:
Q  886 gaacccacttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaattt 979  Q
    ||||||||||||||| |  ||||| |||||||||  |  || ||||||||||||| ||| | ||||||||||||||| ||||||| | ||||||    
T  15048 gaacccacttgggttagtctgatgctattggcttaggaactgggagtatgctcct-cctcaagtctcaggttcgattctctccggggctaattt 14956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 894 - 994
Target Start/End: Complemental strand, 157056 - 156958
Alignment:
Q  894 ttgggttggcatgatggtattggcttgaggcctaggagtatgctccttcctgaggtctcaggttcgattatctccggtgttaatttaagtggactaattt 993  Q
    |||||||| | || |||||||||||||||  || ||||| ||||||| |  ||||||  |||||||||| ||| |||||| ||||| ||||| |||||||    
T  157056 ttgggttgacctgttggtattggcttgagatctgggagtgtgctcctcctcgaggtc--aggttcgattttcttcggtgtcaatttgagtgggctaattt 156959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University