View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5900-Insertion-3 (Length: 944)
Name: NF5900-Insertion-3
Description: NF5900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5900-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 4e-90; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 392 - 580
Target Start/End: Original strand, 16978411 - 16978599
Alignment:
| Q |
392 |
gaaataaccttaacattcttaggaagaacaaaagtttctctttttaccttcattctcttacaacgagaaacataatgatccaaacccatatcatcttcat |
491 |
Q |
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| T |
16978411 |
gaaataactttaacattcttaggaagaacaaaagtttctctttttaccttcattttcttacaacgagaaacatagtgatccaaacccatatcatcttcat |
16978510 |
T |
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| Q |
492 |
cactctttcttagccgcttcgatttcactggaagacagcggaacaatggaacattcttgcttcgagttctgcttgaaacactagccatt |
580 |
Q |
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| T |
16978511 |
cactctttcttagccgcttcgatttcagtggaagacaacggaacaatggaacattcttgcttcgagttctgcttgaaacactagccatt |
16978599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 765 - 944
Target Start/End: Original strand, 16978772 - 16978951
Alignment:
| Q |
765 |
gagagagaaaaagtgttgtctaaggatgatgaagtttaatgttaggaaagtgatgtaatgaaatactataaaaacatggaaatagaaaaagaatcagaca |
864 |
Q |
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| T |
16978772 |
gagagagaaagagtgttgtctaaggatgatgaagtttaatgttaggaaagtgatgtaatgaaatactataaaaacatgtaaatagaaaaagaatcagaca |
16978871 |
T |
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| Q |
865 |
ttggtgtgtaacacaaatagagcaaagagaaagagagacgtgtaactggcgccaaactatatgaggaaaacatcacttat |
944 |
Q |
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| T |
16978872 |
ttggtgtgtaacacaaatagagcaaagagaaagagagacgtgtaactggcgccaaactatatgaggaaaacctcacttat |
16978951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 223 - 355
Target Start/End: Original strand, 16978260 - 16978392
Alignment:
| Q |
223 |
attatcaccgccaaaaccaacagaatgttcttcatcactcatatcatactcatcagaacctattgaaatcggattatcttcatcgaaaccacattttttc |
322 |
Q |
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| T |
16978260 |
attatcaccgccaaaagcaacagaatgttcttcatcactctcatcatactcatcagaacctattgaaatcggattatcttcatccaaaccacattttttc |
16978359 |
T |
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| Q |
323 |
tcaacaaagcttccatctttagcatcaaacatc |
355 |
Q |
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| T |
16978360 |
tcaacaaagcttccatctttagcatcaaacatc |
16978392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 223 - 356
Target Start/End: Original strand, 17008497 - 17008630
Alignment:
| Q |
223 |
attatcaccgccaaaaccaacagaatgttcttcatcactcatatcatactcatcagaacctattgaaatcggattatcttcatcgaaaccacattttttc |
322 |
Q |
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| T |
17008497 |
attatcaccaccaaaaccaacagagtgttcttcatcactctcactatactcatcagaacatattgaaatcgggttatcttcatccaaaccacattttttc |
17008596 |
T |
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| Q |
323 |
tcaacaaagcttccatctttagcatcaaacatct |
356 |
Q |
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| T |
17008597 |
tcaacaaagtttccctctttagcatcaaacatct |
17008630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 485 - 580
Target Start/End: Original strand, 16969366 - 16969461
Alignment:
| Q |
485 |
tcttcatcactctttcttagccgcttcgatttcactggaagacagcggaacaatggaacattcttgcttcgagttctgcttgaaacactagccatt |
580 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||| | |||||||||||||| ||||| ||||||||||| |||| || ||||||| |
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| T |
16969366 |
tcttcatcactctttcttcgccgcttcgatttcggaggaagacaaccaaacaatggaacatttttgctacgagttctgctagaaataccagccatt |
16969461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 16978144 - 16978184
Alignment:
| Q |
101 |
tccaaatcaacaaagtttttatctttatcatcaaactcacc |
141 |
Q |
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| T |
16978144 |
tccaaatcaacaaagtttttatctttatcatcaaactcacc |
16978184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 632 - 664
Target Start/End: Original strand, 16978651 - 16978683
Alignment:
| Q |
632 |
acgttgttctttctctgttatatgttagtactt |
664 |
Q |
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| T |
16978651 |
acgttgttctttctctgttatatgttagtactt |
16978683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 533 - 579
Target Start/End: Complemental strand, 35262210 - 35262164
Alignment:
| Q |
533 |
aacaatggaacattcttgcttcgagttctgcttgaaacactagccat |
579 |
Q |
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| T |
35262210 |
aacaacggaacattcttgctacgagttctgctagaaacaccagccat |
35262164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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