View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5900-Insertion-4 (Length: 866)

Name: NF5900-Insertion-4
Description: NF5900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5900-Insertion-4
NF5900-Insertion-4
[»] chr1 (2 HSPs)
chr1 (562-865)||(29585284-29585584)
chr1 (454-515)||(9516629-9516691)
[»] chr5 (3 HSPs)
chr5 (451-506)||(13515991-13516046)
chr5 (454-515)||(32020052-32020114)
chr5 (461-509)||(15241025-15241074)
[»] chr2 (1 HSPs)
chr2 (454-515)||(36731228-36731290)
[»] chr8 (1 HSPs)
chr8 (461-515)||(29642651-29642705)
[»] chr7 (3 HSPs)
chr7 (454-515)||(19868162-19868224)
chr7 (456-506)||(32117872-32117922)
chr7 (454-508)||(2276730-2276785)
[»] chr4 (4 HSPs)
chr4 (456-506)||(27756619-27756669)
chr4 (454-515)||(9326935-9326999)
chr4 (454-515)||(9373657-9373721)
chr4 (454-515)||(9381969-9382033)


Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 562 - 865
Target Start/End: Complemental strand, 29585584 - 29585284
Alignment:
Q  562 acaaacccatcaaaatatat-aagtgttaaatgaatttagaaaaataaagtagctataattgtgtaaaaaagaggatttttacttttcaactccaccacc 660  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29585584 acaaacccatcaaaatatatcaagtgttaaatgaatttagaaaaataaagtagctataattgtgtaaaaaagaggatttttacttttcaactccaccacc 29585485  T
Q  661 tacatacatacataagtcaaaaaagtcaggagaaaactacgcaaacttgcgtttttgaagaaagtgcaacatcactctcaaatctcaatggttgattcca 760  Q
    ||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29585484 tacatacata----agtcaaaaaagtcaggagaaaactacgcaaacttgcgtttttgaagaaagtgcaacatcactctcaaatctcaatggttgattcca 29585389  T
Q  761 ctcctccaacttcaactatttcttctaatggcaccgccatttcttcttgtttccgacgaacggttgtttactcactttccccttcacttcactctcaccc 860  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29585388 ctcctccaacttcaactatttcttctaatggcaccgccacttcttcttgtttccgacgaacggttgcttactcactttccccttcacttcactctcaccc 29585289  T
Q  861 ttctt 865  Q
    |||||    
T  29585288 ttctt 29585284  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 454 - 515
Target Start/End: Complemental strand, 9516691 - 9516629
Alignment:
Q  454 tgtattctatattaaatagataattttttgataa-taattgatgtttttcaatgaaaaattac 515  Q
    |||||| ||||||||||| |||| ||||| |||| |||||| |||||||||||||||| ||||    
T  9516691 tgtattttatattaaatatataactttttaataaataattggtgtttttcaatgaaaagttac 9516629  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 451 - 506
Target Start/End: Original strand, 13515991 - 13516046
Alignment:
Q  451 ttatgtattctatattaaatagataattttttgataataattgatgtttttcaatg 506  Q
    |||| ||||||||||||||||||||||||||| |||||||||||| |||| |||||    
T  13515991 ttatatattctatattaaatagataattttttaataataattgatattttccaatg 13516046  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 454 - 515
Target Start/End: Original strand, 32020052 - 32020114
Alignment:
Q  454 tgtattctatattaaatagataa-ttttttgataataattgatgtttttcaatgaaaaattac 515  Q
    ||||||||||||||||||||||| |||||| |||||||| | |||||||||| ||||| ||||    
T  32020052 tgtattctatattaaatagataacttttttaataataatcggtgtttttcaaagaaaagttac 32020114  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 461 - 509
Target Start/End: Original strand, 15241025 - 15241074
Alignment:
Q  461 tatattaaatagataattttttgataa-taattgatgtttttcaatgaaa 509  Q
    ||||||||||| |||||||||| |||| |||||| |||||||||||||||    
T  15241025 tatattaaatatataattttttaataaataattgttgtttttcaatgaaa 15241074  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 454 - 515
Target Start/End: Complemental strand, 36731290 - 36731228
Alignment:
Q  454 tgtattctatattaaatagataatt-ttttgataataattgatgtttttcaatgaaaaattac 515  Q
    ||||||||||||||||||||||||| |||| |||||||||  |||||||||||||||| ||||    
T  36731290 tgtattctatattaaatagataatttttttaataataattagtgtttttcaatgaaaagttac 36731228  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 461 - 515
Target Start/End: Complemental strand, 29642705 - 29642651
Alignment:
Q  461 tatattaaatagataattttttgataataattgatgtttttcaatgaaaaattac 515  Q
    ||||||||||||| || ||||| |||||||||| |||||||||||||||| ||||    
T  29642705 tatattaaatagacaactttttaataataattggtgtttttcaatgaaaagttac 29642651  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 454 - 515
Target Start/End: Complemental strand, 19868224 - 19868162
Alignment:
Q  454 tgtattctatattaaatagataattttttgataa-taattgatgtttttcaatgaaaaattac 515  Q
    |||||| ||||||||||| |||| |||||||||| |||||| |||||||||||||||| ||||    
T  19868224 tgtattttatattaaatatataactttttgataaataattggtgtttttcaatgaaaatttac 19868162  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 456 - 506
Target Start/End: Complemental strand, 32117922 - 32117872
Alignment:
Q  456 tattctatattaaatagataattttttgataataattgatgtttttcaatg 506  Q
    ||||||||||||||||||||| ||||| |||||||||| |||||| |||||    
T  32117922 tattctatattaaatagataactttttaataataattggtgttttccaatg 32117872  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 508
Target Start/End: Complemental strand, 2276785 - 2276730
Alignment:
Q  454 tgtattctatattaaatagataattttttgat-aataattgatgtttttcaatgaa 508  Q
    |||||| |||||||||||||||| ||||| || |||||||| ||||||||||||||    
T  2276785 tgtattttatattaaatagataactttttaataaataattggtgtttttcaatgaa 2276730  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 456 - 506
Target Start/End: Complemental strand, 27756669 - 27756619
Alignment:
Q  456 tattctatattaaatagataattttttgataataattgatgtttttcaatg 506  Q
    ||||||||||||||||||||| ||||| |||||||||| |||||| |||||    
T  27756669 tattctatattaaatagataactttttaataataattggtgttttccaatg 27756619  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 454 - 515
Target Start/End: Original strand, 9326935 - 9326999
Alignment:
Q  454 tgtattctatattaaatagataattttttgataataattga---tgtttttcaatgaaaaattac 515  Q
    |||||||||||||||||||| || ||||| |||||||||||   | |||||||||||||| ||||    
T  9326935 tgtattctatattaaatagacaactttttaataataattgatactatttttcaatgaaaagttac 9326999  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 454 - 515
Target Start/End: Original strand, 9373657 - 9373721
Alignment:
Q  454 tgtattctatattaaatagataattttttgataataattga---tgtttttcaatgaaaaattac 515  Q
    |||||||||||||||||||| || ||||| |||||||||||   | |||||||||||||| ||||    
T  9373657 tgtattctatattaaatagacaactttttaataataattgatactatttttcaatgaaaagttac 9373721  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 454 - 515
Target Start/End: Original strand, 9381969 - 9382033
Alignment:
Q  454 tgtattctatattaaatagataattttttgataataattga---tgtttttcaatgaaaaattac 515  Q
    |||||||||||||||||||| || ||||| |||||||||||   | |||||||||||||| ||||    
T  9381969 tgtattctatattaaatagacaactttttaataataattgatactatttttcaatgaaaagttac 9382033  T

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