View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5900-Insertion-5 (Length: 810)

Name: NF5900-Insertion-5
Description: NF5900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5900-Insertion-5
NF5900-Insertion-5
[»] chr3 (7 HSPs)
chr3 (9-472)||(52087250-52087712)
chr3 (521-699)||(52088138-52088312)
chr3 (401-467)||(11511300-11511366)
chr3 (401-467)||(55122135-55122201)
chr3 (401-465)||(41755056-41755120)
chr3 (404-458)||(11510222-11510276)
chr3 (422-467)||(50122383-50122428)
[»] chr6 (2 HSPs)
chr6 (367-469)||(19757887-19757993)
chr6 (422-461)||(5723058-5723097)
[»] chr7 (10 HSPs)
chr7 (401-467)||(46088963-46089029)
chr7 (357-458)||(31873857-31873960)
chr7 (401-463)||(46089676-46089738)
chr7 (401-458)||(46741412-46741469)
chr7 (367-458)||(4997298-4997393)
chr7 (367-458)||(19804633-19804727)
chr7 (367-458)||(31873344-31873438)
chr7 (387-467)||(47405451-47405533)
chr7 (367-467)||(35200787-35200891)
chr7 (358-402)||(38858016-38858061)
[»] chr5 (2 HSPs)
chr5 (367-467)||(9070420-9070523)
chr5 (358-467)||(18848039-18848151)
[»] chr2 (5 HSPs)
chr2 (357-465)||(16118977-16119088)
chr2 (369-467)||(16119119-16119220)
chr2 (401-458)||(33667747-33667804)
chr2 (401-458)||(33667877-33667934)
chr2 (385-458)||(43977555-43977631)
[»] scaffold0153 (2 HSPs)
scaffold0153 (401-467)||(17390-17456)
scaffold0153 (384-467)||(16854-16939)
[»] chr1 (5 HSPs)
chr1 (367-465)||(10974750-10974851)
chr1 (384-467)||(21263330-21263415)
chr1 (367-466)||(33205427-33205529)
chr1 (357-403)||(46341582-46341629)
chr1 (367-458)||(52427529-52427623)
[»] chr8 (1 HSPs)
chr8 (401-465)||(3642524-3642589)
[»] chr4 (1 HSPs)
chr4 (401-458)||(40900250-40900307)


Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-169; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 9 - 472
Target Start/End: Original strand, 52087250 - 52087712
Alignment:
Q  9 ttggtattgtgactaaaaagatcaaatattcgctcagccctcacatcacaaaatgtgcaaccgtcaaactgatcaagcctacatggcacaataaacaatc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52087250 ttggtattgtgactaaaaagatcaaatattcgctcagccctcacatcacaaaatgtgcaaccgtcaaactgatcaagcctacatggcacaataaacaatc 52087349  T
Q  109 tataaaatagagcaactcaactcgctnnnnnnnncatgnnnnnnnnnnnnntcatatacttagaaaatacctaaaagctctttnnnnnnncccc-ataac 207  Q
    ||||||||| ||||||||||||||||        ||||             ||||||||||||||||||||||||||||||||       |||  |||||    
T  52087350 tataaaatacagcaactcaactcgctaaaaaaaacatgcacacacac----tcatatacttagaaaatacctaaaagctctttaaaaacccccatataac 52087445  T
Q  208 ttgagtattagaatgtctttgcaggtacaccatcatgcttcaatgaagaacagtcatacacaggtgttgtgtgggagcgatgttctcacaatactttctt 307  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  52087446 ttgagtattagaatgtctttgcaggtacaccatcgtgcttcaatgaagaacagtcgtacacaggtgttgtgtgggagcgatgttctcacaatactttctt 52087545  T
Q  308 gttcttttctttattctcaccccnnnnnnntatgactagaaaaggtgcaagaaaattaatgttgacacatttgataggctgaaaaacatatgt--aagac 405  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||  |||||    
T  52087546 gttcttttctttattctcaccccaaaaaaatatgactagaaaaggtgcaagaaaattaacgttgacatatttgataggctgaaaaacatatgtaaaagac 52087645  T
Q  406 gaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaagaacac 472  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  52087646 gaaaataccccctcgacagttaactaccgaagtaatgaaccggctgcagttaagtgccgaagaacac 52087712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 521 - 699
Target Start/End: Original strand, 52088138 - 52088312
Alignment:
Q  521 tgcaaagattgctttagtactttagtgactaaatctcagacgttagcaaacataacaattcaacaaacttcacctctcgttgacacgtcattaccacctc 620  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  52088138 tgcaaagattgctttagtgctttagtgactaaatctcagacgttagcaagcataacaattcaacaaacttcacctctcgttgacacatcattaccacctc 52088237  T
Q  621 ctacacaaccgatgttagttcatgtactaactaactgatgactagatctcataatagtgtatttggaaaactttgtgtg 699  Q
    |||||||||||||||||||||||||    | |||||||||||||||||||||||| |||||||||||||||||||||||    
T  52088238 ctacacaaccgatgttagttcatgt----agtaactgatgactagatctcataatggtgtatttggaaaactttgtgtg 52088312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 401 - 467
Target Start/End: Complemental strand, 11511366 - 11511300
Alignment:
Q  401 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 467  Q
    ||||||||||| || | ||| ||||||||||||||| ||||||||||||||||||||| | ||||||    
T  11511366 aagacgaaaatgcctcctcgacagttaactaccgaaataatgaaccggctgcagttaactaccgaag 11511300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 401 - 467
Target Start/End: Complemental strand, 55122201 - 55122135
Alignment:
Q  401 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 467  Q
    ||||||||||| |||| ||| ||||||||||||||| ||||||||||| ||||||||| | ||||||    
T  55122201 aagacgaaaatgccccctcgacagttaactaccgaaataatgaaccggttgcagttaactcccgaag 55122135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 401 - 465
Target Start/End: Complemental strand, 41755120 - 41755056
Alignment:
Q  401 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccga 465  Q
    |||||||||||  ||| ||| ||||||||||| ||| |||||||||||||||| |||| ||||||    
T  41755120 aagacgaaaatgtcccctcgacagttaactactgaaataatgaaccggctgcaattaactgccga 41755056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 404 - 458
Target Start/End: Original strand, 11510222 - 11510276
Alignment:
Q  404 acgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 458  Q
    ||||||||| ||| ||| | ||||||||||||| ||||||||| |||||||||||    
T  11510222 acgaaaatatcccctcgacggttaactaccgaaataatgaaccagctgcagttaa 11510276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 422 - 467
Target Start/End: Original strand, 50122383 - 50122428
Alignment:
Q  422 cagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 467  Q
    ||||||||||||||| | | ||||||||||||||||| ||||||||    
T  50122383 cagttaactaccgaaattaagaaccggctgcagttaactgccgaag 50122428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 367 - 469
Target Start/End: Complemental strand, 19757993 - 19757887
Alignment:
Q  367 tgttgacacatttgatagg-ctgaaaaa--catatgtaagacgaaaataccccttcgccagttaactaccgaagt-aatgaaccggctgcagttaattgc 462  Q
    ||||||||||| ||||||| ||||||||  |||||  ||||||||||||| ||| |  ||||||||||||||||| || ||||||||||||||||| |||    
T  19757993 tgttgacacatatgatagggctgaaaaatacatataaaagacgaaaatactcctgcagcagttaactaccgaagttaaagaaccggctgcagttaactgc 19757894  T
Q  463 cgaagaa 469  Q
    |||||||    
T  19757893 cgaagaa 19757887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 422 - 461
Target Start/End: Original strand, 5723058 - 5723097
Alignment:
Q  422 cagttaactaccgaagtaatgaaccggctgcagttaattg 461  Q
    |||||||||| |||| ||||||||||||||||||||||||    
T  5723058 cagttaactatcgaaataatgaaccggctgcagttaattg 5723097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 401 - 467
Target Start/End: Original strand, 46088963 - 46089029
Alignment:
Q  401 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 467  Q
    ||||| ||||| |||| ||||||||||||||||||| ||||||||||||||||||||| | ||||||    
T  46088963 aagacaaaaatgccccctcgccagttaactaccgaaataatgaaccggctgcagttaactcccgaag 46089029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 357 - 458
Target Start/End: Complemental strand, 31873960 - 31873857
Alignment:
Q  357 agaaaattaatgttgacacatttgatagg-ctgaaaa-acatatgtaagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcag 454  Q
    ||||||||  ||||||||||| ||||||| ||||||| |||| |  |||||||||||||| || || |||||||||||||| ||   |||||||||||||    
T  31873960 agaaaattgttgttgacacatatgatagggctgaaaacacatgtaaaagacgaaaatacctctacggcagttaactaccgatgtttggaaccggctgcag 31873861  T
Q  455 ttaa 458  Q
    ||||    
T  31873860 ttaa 31873857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 401 - 463
Target Start/End: Complemental strand, 46089738 - 46089676
Alignment:
Q  401 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgcc 463  Q
    ||||||||||| |||| ||| |||||||||||| || || |||||||||||||||||| ||||    
T  46089738 aagacgaaaatgccccctcggcagttaactaccaaaatagtgaaccggctgcagttaactgcc 46089676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 458
Target Start/End: Complemental strand, 46741469 - 46741412
Alignment:
Q  401 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 458  Q
    |||||||||||  ||||||| || |||||||||||| ||||||| |||||||||||||    
T  46741469 aagacgaaaatgtcccttcgacaattaactaccgaaataatgaatcggctgcagttaa 46741412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 367 - 458
Target Start/End: Original strand, 4997298 - 4997393
Alignment:
Q  367 tgttgacacatttgataggct-gaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatg-aaccggctgcagttaa 458  Q
    |||| |||||| ||||||| | |||||||| ||||||  ||||||||||||||| || |||||||||||||||||  || |||||||| |||||||    
T  4997298 tgtttacacatatgatagggttgaaaaacacatgtaaaagacgaaaatacccctacggcagttaactaccgaagttttgaaaccggctacagttaa 4997393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 458
Target Start/End: Complemental strand, 19804727 - 19804633
Alignment:
Q  367 tgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 458  Q
    ||||||||||| ||||||| |||||||||| ||||||  ||||||||| | | | || || ||||||||||||||   |||||||||||||||||    
T  19804727 tgttgacacatgtgataggactgaaaaacacatgtaaaagacgaaaatgctcatgcgacaattaactaccgaagtttggaaccggctgcagttaa 19804633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 458
Target Start/End: Original strand, 31873344 - 31873438
Alignment:
Q  367 tgttgacacatttgata-ggctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 458  Q
    ||||||||||| ||||| |||||||||||| ||||||  || |||||| | ||| || |||||||||||||||||   |||||| ||||||||||    
T  31873344 tgttgacacatatgataaggctgaaaaacacatgtaaaagatgaaaatgctcctgcggcagttaactaccgaagtttagaaccgactgcagttaa 31873438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 387 - 467
Target Start/End: Complemental strand, 47405533 - 47405451
Alignment:
Q  387 tgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 467  Q
    ||||||||| ||||||  |||||||||  ||| ||| ||||||||||| ||| ||| ||||||||||||||||| | ||||||    
T  47405533 tgaaaaacacatgtaaaagacgaaaatgtcccctcggcagttaactactgaaataaagaaccggctgcagttaactaccgaag 47405451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 367 - 467
Target Start/End: Complemental strand, 35200891 - 35200787
Alignment:
Q  367 tgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaa-ccggctgcagttaattgc 462  Q
    |||| |||||| ||||||| |||||||||| ||||||  || |||||| ||||| || |||||| ||||||||||  |||| |||||||||||||| | |    
T  35200891 tgtttacacatatgatagggctgaaaaacacatgtaaaagatgaaaatgcccctgcggcagttagctaccgaagttttgaaaccggctgcagttaactac 35200792  T
Q  463 cgaag 467  Q
    |||||    
T  35200791 cgaag 35200787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 358 - 402
Target Start/End: Complemental strand, 38858061 - 38858016
Alignment:
Q  358 gaaaattaatgttgacacatttgata-ggctgaaaaacatatgtaa 402  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||||    
T  38858061 gaaaattgatgttgacacatttgatagggctgaaaaacacatgtaa 38858016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 367 - 467
Target Start/End: Complemental strand, 9070523 - 9070420
Alignment:
Q  367 tgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgcc 463  Q
    ||||||||||| ||||||| |||||||| | ||||||  ||||||||||  ||| || ||||||||||||||||||| ||||| ||||||||||| | ||    
T  9070523 tgttgacacatatgataggactgaaaaatacatgtaaaagacgaaaatattcctgcggcagttaactaccgaagtaaggaaccagctgcagttaacttcc 9070424  T
Q  464 gaag 467  Q
    ||||    
T  9070423 gaag 9070420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 358 - 467
Target Start/End: Complemental strand, 18848151 - 18848039
Alignment:
Q  358 gaaaattaatgttgacacatttgata-ggctgaaaaacatatgt--aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcag 454  Q
    |||||||| ||||||||||| ||||| |||||||||||| ||||  ||||||||||| ||||| |   | ||||||||||||||    ||||| ||||||    
T  18848151 gaaaattattgttgacacatatgatagggctgaaaaacacatgtaaaagacgaaaatgcccctgcagtaattaactaccgaagtttaaaaccgactgcag 18848052  T
Q  455 ttaattgccgaag 467  Q
    |||| | ||||||    
T  18848051 ttaactaccgaag 18848039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 357 - 465
Target Start/End: Original strand, 16118977 - 16119088
Alignment:
Q  357 agaaaattaatgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgca 453  Q
    ||||||||  ||||||||||| ||||||| |||||||||| ||||||  ||||||||| ||||| |  | |||||||||||||||||  ||||| |||||    
T  16118977 agaaaattgctgttgacacatatgatagggctgaaaaacacatgtaaatgacgaaaatgcccctgcaacggttaactaccgaagtaagaaaccgactgca 16119076  T
Q  454 gttaattgccga 465  Q
    ||||| ||||||    
T  16119077 gttaactgccga 16119088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 369 - 467
Target Start/End: Complemental strand, 16119220 - 16119119
Alignment:
Q  369 ttgacacatttgatag-gctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccga 465  Q
    ||||||||| |||||| ||| ||||||||||||||  ||||||||| ||| |    ||||| ||||||||||||| ||||||||||||||||| ||| ||    
T  16119220 ttgacacatatgatagagctaaaaaacatatgtaaaagacgaaaatgcccatgtagcagtttactaccgaagtaaagaaccggctgcagttaactgctga 16119121  T
Q  466 ag 467  Q
    ||    
T  16119120 ag 16119119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 458
Target Start/End: Original strand, 33667747 - 33667804
Alignment:
Q  401 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 458  Q
    |||| ||||||  ||| ||| ||||||||||||||| |||||||||||||||||||||    
T  33667747 aagatgaaaatctcccctcggcagttaactaccgaaataatgaaccggctgcagttaa 33667804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 458
Target Start/End: Complemental strand, 33667934 - 33667877
Alignment:
Q  401 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 458  Q
    ||||||||||| || | ||  ||||||||||||||| |||||||||||||||||||||    
T  33667934 aagacgaaaatgcctcctcagcagttaactaccgaaataatgaaccggctgcagttaa 33667877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 458
Target Start/End: Original strand, 43977555 - 43977631
Alignment:
Q  385 gctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatg-aaccggctgcagttaa 458  Q
    ||||||||||| ||||||  ||||||||| ||||| || ||| |||||||||||||  || ||||||||||||||||    
T  43977555 gctgaaaaacacatgtaaaagacgaaaatgcccctgcggcagctaactaccgaagttttgaaaccggctgcagttaa 43977631  T

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Target: scaffold0153 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 401 - 467
Target Start/End: Complemental strand, 17456 - 17390
Alignment:
Q  401 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 467  Q
    |||||||||||  ||| ||| ||||||||||||||| ||||||||||||||||||||| | ||||||    
T  17456 aagacgaaaatgacccctcggcagttaactaccgaaataatgaaccggctgcagttaactaccgaag 17390  T

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Target: scaffold0153; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 384 - 467
Target Start/End: Original strand, 16854 - 16939
Alignment:
Q  384 ggctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 467  Q
    |||||||||||| ||||||  ||||||||| ||||| ||  ||||||||||||||||   ||||||| ||||||||| | ||||||    
T  16854 ggctgaaaaacacatgtaaaagacgaaaatgcccctgcggtagttaactaccgaagtttggaaccggttgcagttaactaccgaag 16939  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 367 - 465
Target Start/End: Complemental strand, 10974851 - 10974750
Alignment:
Q  367 tgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgcc 463  Q
    ||||||||||| ||||||| |||||||||| || |||  ||||||||| || || || ||||||||||| ||||||| ||||||| ||||||||| ||||    
T  10974851 tgttgacacatatgatagggctgaaaaacacatataaaagacgaaaatgcctctgcgacagttaactactgaagtaaggaaccggttgcagttaactgcc 10974752  T
Q  464 ga 465  Q
    ||    
T  10974751 ga 10974750  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 384 - 467
Target Start/End: Original strand, 21263330 - 21263415
Alignment:
Q  384 ggctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 467  Q
    |||||||||||| ||||||  || |||||||||||| || |||||||||||||||||   |||||| |||||||||||| ||||||    
T  21263330 ggctgaaaaacacatgtaaaagatgaaaatacccctgcggcagttaactaccgaagtttggaaccgactgcagttaattcccgaag 21263415  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 466
Target Start/End: Original strand, 33205427 - 33205529
Alignment:
Q  367 tgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgcc 463  Q
    |||| |||||| ||||||| |||||||||| ||||||  ||||||||| || || || |||||| ||||||||||   |||||||||| |||||| ||||    
T  33205427 tgtttacacatatgatagggctgaaaaacacatgtaaaagacgaaaatgcctctgcggcagttacctaccgaagtttggaaccggctgtagttaactgcc 33205526  T
Q  464 gaa 466  Q
    |||    
T  33205527 gaa 33205529  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 357 - 403
Target Start/End: Original strand, 46341582 - 46341629
Alignment:
Q  357 agaaaattaatgttgacacatttgata-ggctgaaaaacatatgtaag 403  Q
    |||||||| |||||||||||||||||| ||||||||||| ||||||||    
T  46341582 agaaaattgatgttgacacatttgatagggctgaaaaacgtatgtaag 46341629  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 458
Target Start/End: Complemental strand, 52427623 - 52427529
Alignment:
Q  367 tgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 458  Q
    |||||||| || ||||||| |||||||||| ||||||  ||||||||| || || |  |||||||||||||||||   |||||||||||||||||    
T  52427623 tgttgacatatatgataggactgaaaaacacatgtaaaagacgaaaatgcctctgctacagttaactaccgaagtttggaaccggctgcagttaa 52427529  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 401 - 465
Target Start/End: Complemental strand, 3642589 - 3642524
Alignment:
Q  401 aagacgaaaataccccttcgccagttaactaccgaag-taatgaaccggctgcagttaattgccga 465  Q
    ||||||||||||||| | || |||||||||| ||||| ||| ||||||| ||||||||| ||||||    
T  3642589 aagacgaaaatacccatgcggcagttaactatcgaagttaaagaaccggttgcagttaactgccga 3642524  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 401 - 458
Target Start/End: Original strand, 40900250 - 40900307
Alignment:
Q  401 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 458  Q
    ||||||||||| |||| ||| |||||||||| |||| |||| |||||||| |||||||    
T  40900250 aagacgaaaatgccccatcggcagttaactatcgaaataataaaccggctacagttaa 40900307  T

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