View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5900-Insertion-6 (Length: 463)
Name: NF5900-Insertion-6
Description: NF5900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5900-Insertion-6 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 8 - 463
Target Start/End: Complemental strand, 14236588 - 14236133
Alignment:
| Q |
8 |
atatatacaggtctttagggaggaattgttcaaggttcaaagagctgaaaagggtgcagattttgactcttttatatcggagaaagtggttgctgttgtt |
107 |
Q |
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| T |
14236588 |
atatatacaggtctttaggaaggaattgttcaaggtgcaaagagctgaaaagggtgcagattttgactcttttatatccgagaaagtggttgctgttgtt |
14236489 |
T |
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| Q |
108 |
ggtgatgtatctcttgaaatgttgggagtaaaagatgtgaaaaggaatgaggagatgttgaaagagattgatataatagttcattctgctgccacaacca |
207 |
Q |
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| T |
14236488 |
ggtgatgtatctctagaaatgttgggagtaaaagatgtgaaaaggaatgaggagatgttgaaagagattgatataatagttcattctgctgccacaacca |
14236389 |
T |
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| Q |
208 |
agcttgatgataggtaatcacgttgtctctaatctttcatgtataattaaactatctatttctcttttacccttgcattaatttaatatttctaggtaat |
307 |
Q |
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| T |
14236388 |
agcttgatgataggtaatcacgttgtctctaatctttcatgtataattaaactatctatttctcttttacccttgcattaatttaatatttctaggtaat |
14236289 |
T |
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| Q |
308 |
ttctgacattaaaagtagatgaggaaataatatatcttttttgcacaaatcaaaatgggtatatattaacaaaaacggtgatactctgacagaaggagtg |
407 |
Q |
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| T |
14236288 |
ttctgacattaaaagtagatgaggaaataatatatcttttttgcacaaatcaaaatgggtatatattaacaaaaacggtgatactccgacaaaaggagtg |
14236189 |
T |
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| Q |
408 |
caaaagaaaaacaacgattaaagtttacaaattacaaggagtcaaagaaaggggca |
463 |
Q |
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| T |
14236188 |
caaaagaaaaacaacgattaaagtttacaaattacaaggagtcaaagaaaggggca |
14236133 |
T |
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