View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5900-Insertion-7 (Length: 414)
Name: NF5900-Insertion-7
Description: NF5900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5900-Insertion-7 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 86 - 414
Target Start/End: Complemental strand, 7258439 - 7258119
Alignment:
| Q |
86 |
ataaaccactaaattaatctcggactctctctgtaaactactatcaaactaatat-tgactatgttaatattttaaatcaatgtttgttaaaaatttctt |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| || |
|
|
| T |
7258439 |
ataaaccactaaattaatctcggactctct-----aactactatcaaactaatatctgactatgttaatattttaaatcagtgtttattaaaaaaaa-tt |
7258346 |
T |
|
| Q |
185 |
aattagttctttgtctatatgtttttgtcacatgacaaaggatttaattnnnnnnnntatatcaaattcaaattcatataaacccgattaagaattaaag |
284 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7258345 |
aattagatctttatctatatgtttttgtcacatgacaaaggatttaattaaaaaa---atatcaaattcaaattcatataaacccgattaagaattaaag |
7258249 |
T |
|
| Q |
285 |
aactattgaactcatgtgacgcacatgccatnnnnnnncattggtttgcccaaatataaagtcatgcattggtttgcccaaatataaataaaaaagttag |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7258248 |
aactattgaactcatgtgacgcacatgccatcaaaaaacattggtttgcccaaatataaagtcatgcattggtttgcccaaatataaataaaaaagttag |
7258149 |
T |
|
| Q |
385 |
gaaaatatttttgctcacgaggttcggcag |
414 |
Q |
| |
|
| ||||||||||||||||||||||||||| |
|
|
| T |
7258148 |
cagaatatttttgctcacgaggttcggcag |
7258119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 32502876 - 32502928
Alignment:
| Q |
168 |
tttgttaaaaatttcttaattagttctttgtctatatgtttttgtcacatgac |
220 |
Q |
| |
|
||||||||| ||||| |||||| || |||||| ||||||||||||||||||| |
|
|
| T |
32502876 |
tttgttaaatgtttctcaattagatcattgtctctatgtttttgtcacatgac |
32502928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 17437744 - 17437695
Alignment:
| Q |
168 |
tttgttaaaaatttcttaattagttctttgtctatatgtttttgtcacat |
217 |
Q |
| |
|
|||||||||| ||||| |||||| ||||||||| |||||||||||||||| |
|
|
| T |
17437744 |
tttgttaaaagtttctcaattagatctttgtctctatgtttttgtcacat |
17437695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 9900262 - 9900327
Alignment:
| Q |
168 |
tttgttaaaaatttcttaattagttctttgtctatatgtttttgtcacatgacaaaggatttaatt |
233 |
Q |
| |
|
||||| |||| ||||| |||||| ||||||| | ||||||||||||||||| ||| |||||||||| |
|
|
| T |
9900262 |
tttgtcaaaagtttctcaattagatctttgtatctatgtttttgtcacatgtcaagggatttaatt |
9900327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 5162980 - 5162930
Alignment:
| Q |
168 |
tttgttaaaaatttcttaattagttctttgtctatatgtttttgtcacatg |
218 |
Q |
| |
|
|||||||||| ||| |||||||| || |||||| ||||||||||||||||| |
|
|
| T |
5162980 |
tttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatg |
5162930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 40860991 - 40860921
Alignment:
| Q |
149 |
ttaatattttaaatcaatgtttgttaaaaatttcttaattagttctttgtctatatgtttttgtcacatga |
219 |
Q |
| |
|
||||||||| |||| | | ||||| |||| ||||| ||||| |||||| ||||||||||||||||||||| |
|
|
| T |
40860991 |
ttaatatttcaaattagtctttgtcaaaagtttctcaattaagtctttggctatatgtttttgtcacatga |
40860921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University