View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5900-Insertion-8 (Length: 391)
Name: NF5900-Insertion-8
Description: NF5900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5900-Insertion-8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 391
Target Start/End: Original strand, 44862992 - 44863375
Alignment:
| Q |
8 |
catactatttcaaaaagcctatttagcaaaaaagggccaaatctagatattcaaaagccttttagacctaatgagtcggtttatttaaacctataaataa |
107 |
Q |
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| T |
44862992 |
catactatttcaaaaaacctatttagcaaaaaagggccaaatctagatattcaaaagccttttagacctaatgagtcggtttatttaaacctataaataa |
44863091 |
T |
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| Q |
108 |
caagataatattttgatttctgtattacnnnnnnnnnnnnggaaatatgattgttgttattactattatgagattttaaaataatttattaatcattctt |
207 |
Q |
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| T |
44863092 |
caagataatattttgatttctgtattactttttattttttggaaatatgattgttgttattactattatgagattttaaaataatttattaatcattctt |
44863191 |
T |
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| Q |
208 |
attggcatgtttaatgatttaagaaaattgttctatataaagacataagtttgtaagcttatttaatgataggtttatggtctacattagatactgaaac |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44863192 |
attggcatgtttaatgatttaagaaaattgttctatataaagacacaagtttgtaagcttatttaatgataggtttatggtctacattagatactgaaac |
44863291 |
T |
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| Q |
308 |
cagatttcaagtatatacattccagatttaggccttagaaacttggccctgcttgattcatttcaactgccatgtatttgttgt |
391 |
Q |
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| T |
44863292 |
cagatttcaagtatatacatgccagatttaggccttagaaacttggccctgcttgattcatttcaactgccatgtatttgttgt |
44863375 |
T |
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