View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5900-Insertion-9 (Length: 143)

Name: NF5900-Insertion-9
Description: NF5900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5900-Insertion-9
NF5900-Insertion-9
[»] chr8 (1 HSPs)
chr8 (7-140)||(27842594-27842727)
[»] chr1 (1 HSPs)
chr1 (30-112)||(11236983-11237062)
[»] chr2 (2 HSPs)
chr2 (15-90)||(41755227-41755304)
chr2 (16-110)||(34341192-34341288)
[»] chr4 (4 HSPs)
chr4 (14-130)||(7352375-7352493)
chr4 (29-127)||(588700-588800)
chr4 (15-82)||(18905694-18905764)
chr4 (15-87)||(27059415-27059489)
[»] chr5 (3 HSPs)
chr5 (23-89)||(13909407-13909475)
chr5 (22-65)||(17168052-17168095)
chr5 (17-64)||(31573928-31573975)
[»] chr3 (2 HSPs)
chr3 (14-130)||(46281687-46281806)
chr3 (67-110)||(29582913-29582956)
[»] chr7 (1 HSPs)
chr7 (21-86)||(34574503-34574570)


Alignment Details
Target: chr8 (Bit Score: 118; Significance: 1e-60; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 27842727 - 27842594
Alignment:
Q  7 atatataagataaatgttcatggttctttgttgtgttttaaaacaaatgaatcaaacatcaatttatacaagtttatgtgcgtcatagaccacataattt 106  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  27842727 atatataagataagtgttcatggttctttgttgtgttttacaacaaatgaatcaaacatcaatttatacaagtttatgtgcgtcgtggaccacataattt 27842628  T
Q  107 gtcgttgcaacctgaaccacacaacaacaaaaaa 140  Q
    ||||||||||||||||||||||||||||||||||    
T  27842627 gtcgttgcaacctgaaccacacaacaacaaaaaa 27842594  T

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Target: chr1 (Bit Score: 49; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 11236983 - 11237062
Alignment:
Q  30 ttctttgttgtgttttaaaacaaatgaatcaaacatcaatttatacaagtttatgtgcgtcatagaccacataatttgtcgtt 112  Q
    ||||||||||||||||| |||||||||||||||||||   ||||||||||| ||||||||||| ||||| |||| ||||||||    
T  11236983 ttctttgttgtgttttacaacaaatgaatcaaacatc---ttatacaagttgatgtgcgtcatggaccagataaattgtcgtt 11237062  T

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Target: chr2 (Bit Score: 47; Significance: 3e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 41755304 - 41755227
Alignment:
Q  15 gataaatgttcatggttctttgttgtgttttaaaacaaatgaatcaaaca--tcaatttatacaagtttatgtgcgtc 90  Q
    ||||| |||||||||||||||||||| ||||| |||||||||| ||||||  |||||||||| |||||||||||||||    
T  41755304 gataagtgttcatggttctttgttgtcttttataacaaatgaaacaaacacgtcaatttatagaagtttatgtgcgtc 41755227  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 34341192 - 34341288
Alignment:
Q  16 ataaatgttcatggttctttgttgtgttttaaaacaaatgaatcaa--acatcaatttatacaagtttatgtgcgtcatagaccacataatttgtcg 110  Q
    ||||||||| || |||||||||||| ||||| |||||||||| |||  ||| |||||||||||||||| |||||||| | ||||||| || ||||||    
T  34341192 ataaatgtttatagttctttgttgtcttttacaacaaatgaaccaaacacaccaatttatacaagtttttgtgcgtcgtggaccacaaaaattgtcg 34341288  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 7352375 - 7352493
Alignment:
Q  14 agataaatgttcatggttctttgttgtgttttaaaacaaatgaa-tcaa-acatcaatttatacaagtttatgtgcgtcatagaccacataatttgtcgt 111  Q
    |||||| ||||||||||| ||||||| |||||| | |||||||| ||||  ||||||||| || |||||| | || ||| | ||| ||| || ||||||     
T  7352375 agataagtgttcatggttatttgttgggttttacagcaaatgaactcaattcatcaatttttagaagtttttatgtgtcgtggactacagaaattgtcgg 7352474  T
Q  112 tgcaacctgaaccacacaa 130  Q
    |||||||| ||||||||||    
T  7352475 tgcaacctcaaccacacaa 7352493  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 127
Target Start/End: Original strand, 588700 - 588800
Alignment:
Q  29 gttctttgttgtgttttaaaacaaatgaatcaaaca--tcaatttatacaagtttatgtgcgtcatagaccacataatttgtcgttgcaacctgaaccac 126  Q
    |||||||||||||||||| || ||||||| ||||||  |||||||||| |||||| |||  ||| | ||| ||  || |||| | |||||||||||||||    
T  588700 gttctttgttgtgttttataataaatgaaccaaacatttcaatttatagaagtttttgtatgtcgtggacaaccaaaattgtagatgcaacctgaaccac 588799  T
Q  127 a 127  Q
    |    
T  588800 a 588800  T

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Target: chr4; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 18905694 - 18905764
Alignment:
Q  15 gataaatgttcatggttctttgttgtgttttaaaac-aaatgaatcaaaca--tcaatttatacaagttta 82  Q
    |||||||||||||||||| | |||||||||||| || ||||||| ||||||  |||||||||  |||||||    
T  18905694 gataaatgttcatggttcatagttgtgttttaacacaaaatgaaccaaacacttcaatttattgaagttta 18905764  T

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Target: chr4; HSP #4
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 27059489 - 27059415
Alignment:
Q  15 gataaatgttcatggttctttgttgtgttttaaaacaaatgaatcaa--acatcaatttatacaagtttatgtgc 87  Q
    ||||| |||||| |||| |||||||||||||| | |||||||| |||  ||| ||||||||| |||||| |||||    
T  27059489 gataagtgttcacggttttttgttgtgttttacagcaaatgaaccaaacacaccaatttatagaagtttttgtgc 27059415  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 13909475 - 13909407
Alignment:
Q  23 ttcatggttctttgttgtgttttaaaacaaatgaatcaaaca--tcaatttatacaagtttatgtgcgt 89  Q
    ||||| |||||||||||||||||| |||||||||| | ||||  || |||||| ||||||| |||||||    
T  13909475 ttcatagttctttgttgtgttttacaacaaatgaaccgaacacgtctatttattcaagtttttgtgcgt 13909407  T

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Target: chr5; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 17168052 - 17168095
Alignment:
Q  22 gttcatggttctttgttgtgttttaaaacaaatgaatcaaacat 65  Q
    |||||| |||||||||||||||||| |||||||||  |||||||    
T  17168052 gttcatagttctttgttgtgttttacaacaaatgagccaaacat 17168095  T

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Target: chr5; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 31573975 - 31573928
Alignment:
Q  17 taaatgttcatggttctttgttgtgttttaaaacaaatgaatcaaaca 64  Q
    ||||||||| |||||||||||| ||||||| | |||||||| ||||||    
T  31573975 taaatgttcttggttctttgttttgttttacatcaaatgaaccaaaca 31573928  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 46281806 - 46281687
Alignment:
Q  14 agataaatgttcatggttctttgttgtgttttaaaacaaatgaatcaaaca---tcaatttatacaagtttatgtgcgtcatagaccacataatttgtcg 110  Q
    ||||||| || |||||||||||||||||||||| | |||||||| || |||   |||||||||| ||||||  |||| ||   ||  ||| || ||||||    
T  46281806 agataaacgtacatggttctttgttgtgttttacagcaaatgaaccagacatcgtcaatttatataagttttcgtgcttcgaggataacaaaaattgtcg 46281707  T
Q  111 ttgcaacctgaaccacacaa 130  Q
     || ||||||||||||||||    
T  46281706 atgaaacctgaaccacacaa 46281687  T

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Target: chr3; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 29582913 - 29582956
Alignment:
Q  67 aatttatacaagtttatgtgcgtcatagaccacataatttgtcg 110  Q
    |||||||| ||||||||||||||| |||||||||| | ||||||    
T  29582913 aatttatagaagtttatgtgcgtcgtagaccacatgaattgtcg 29582956  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 34574503 - 34574570
Alignment:
Q  21 tgttcatggttctttgttgtgttttaaaacaaatgaatcaa--acatcaatttatacaagtttatgtg 86  Q
    ||||||||||| |||||||||||||| |  ||||||| |||  ||||||||||||| |||||| ||||    
T  34574503 tgttcatggttatttgttgtgttttacagtaaatgaaccaaacacatcaatttatagaagtttttgtg 34574570  T

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