View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5900_high_13 (Length: 292)

Name: NF5900_high_13
Description: NF5900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5900_high_13
NF5900_high_13
[»] chr1 (6 HSPs)
chr1 (19-146)||(235297-235424)
chr1 (99-276)||(251172-251355)
chr1 (99-276)||(247022-247202)
chr1 (99-271)||(8814139-8814311)
chr1 (227-276)||(235421-235470)
chr1 (19-56)||(251389-251426)
[»] chr6 (6 HSPs)
chr6 (96-181)||(7012987-7013072)
chr6 (96-181)||(9170969-9171054)
chr6 (96-168)||(7029980-7030052)
chr6 (96-166)||(212966-213036)
chr6 (98-181)||(7025925-7026008)
chr6 (110-181)||(9159374-9159445)
[»] chr5 (2 HSPs)
chr5 (96-193)||(33541810-33541907)
chr5 (96-170)||(18571269-18571343)
[»] chr3 (1 HSPs)
chr3 (96-258)||(9494619-9494784)


Alignment Details
Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 235297 - 235424
Alignment:
Q  19 tcttctccttttcattaagcttaaacacgttaatccttgcacgatcataatcatcagcatcttcatgaatctcatggtcataaacatctgctaacaacaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  235297 tcttctccttttcattaagcttaaacacgttaatccttgcacgatcataatcatcagcatcttcatcaatctcatggtcataaacatctgctaacaacaa 235396  T
Q  119 atcaccgtcgctctccactaagaattta 146  Q
    ||||||||||||||||||||||||||||    
T  235397 atcaccgtcgctctccactaagaattta 235424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 99 - 276
Target Start/End: Complemental strand, 251355 - 251172
Alignment:
Q  99 taaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaagatacagcaactaaccggacagtggaatcat 198  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||  ||| |||||| ||||||||||||| |    
T  251355 taaacatctgctaacaacaaatcactgtcgctctccaccaagaatttaatatctccaccaccaaccaaagattgagccactaactggacagtggaatcct 251256  T
Q  199 caggac------aaacagtaacagtccgcccagttttatcaaccacataaggctggcctttgaaaacacgaatgtctcctaaat 276  Q
    |||| |       ||||||||| ||||| ||||| || || ||| |||||||  ||||||||||||||| ||||||||| ||||    
T  251255 caggtccaagttcaacagtaactgtccgtccagtattgtctaccgcataaggtcggcctttgaaaacacaaatgtctccaaaat 251172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 99 - 276
Target Start/End: Original strand, 247022 - 247202
Alignment:
Q  99 taaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaagatacagcaactaaccggacagtggaatca- 197  Q
    |||||||||  ||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||     
T  247022 taaacatctattaacaacaaatcacccttgctctccactaagaatttaatatctccaccaccaaccaaagattcagcaactaaccggacagtggaatcat 247121  T
Q  198 --tcaggacaaacagtaacagtccgcccagttttatcaaccacataaggctggcctttgaaaacacgaatgtctcctaaat 276  Q
      || || | ||    ||| ||||  |||||||| || ||| |||||||  ||||||||||||||| ||||||||||||||    
T  247122 cctccggtccaaatccaactgtccatccagttttgtctaccgcataaggtcggcctttgaaaacacaaatgtctcctaaat 247202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 271
Target Start/End: Complemental strand, 8814311 - 8814139
Alignment:
Q  99 taaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaagatacagcaactaaccggacagtggaatcat 198  Q
    |||||||||||||||||||||||||| | ||||||||||| ||||||||||||||| ||| ||| ||||||| |||| |||||| | ||||| || ||||    
T  8814311 taaacatctgctaacaacaaatcacccttgctctccactaggaatttaatatccccgccagcaagcaaagattcagccactaactgaacagttgagtcat 8814212  T
Q  199 caggacaaacagtaacagtccgcccagttttatcaaccacataaggctggcctttgaaaacacgaatgtctcc 271  Q
    | || | ||||||||||||| | |||||||| || |||||||||  ||| ||||||||| |||| || |||||    
T  8814211 ccggtccaacagtaacagtctgtccagttttgtctaccacataacactgacctttgaaagcacggatatctcc 8814139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 235421 - 235470
Alignment:
Q  227 tttatcaaccacataaggctggcctttgaaaacacgaatgtctcctaaat 276  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  235421 tttatcaaccacataaggctggcctttgaaaacacggatgtctcctaaat 235470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 251426 - 251389
Alignment:
Q  19 tcttctccttttcattaagcttaaacacgttaatcctt 56  Q
    |||| |||||||||||||||||||||||||||||||||    
T  251426 tcttttccttttcattaagcttaaacacgttaatcctt 251389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 181
Target Start/End: Original strand, 7012987 - 7013072
Alignment:
Q  96 tcataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaagatacagcaactaa 181  Q
    ||||||||||||||||||||||||||  | |||||||||||||||||||| || ||||| ||||||||||||| | |||| |||||    
T  7012987 tcataaacatctgctaacaacaaatcctcctcgctctccactaagaatttcatgtccccgccaccaaccaaaggttcagccactaa 7013072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 181
Target Start/End: Original strand, 9170969 - 9171054
Alignment:
Q  96 tcataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaagatacagcaactaa 181  Q
    |||||||| || |||||||||||||| || |||||||||||||||||||| || | ||||||||||||||||| | ||||||||||    
T  9170969 tcataaacgtccgctaacaacaaatctccctcgctctccactaagaatttcatgttcccaccaccaaccaaaggttcagcaactaa 9171054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 7029980 - 7030052
Alignment:
Q  96 tcataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaag 168  Q
    ||||||||||| |||||||||||||| || |||||||||||||||||||| | ||  ||||||||||||||||    
T  7029980 tcataaacatccgctaacaacaaatccccctcgctctccactaagaatttcacatttccaccaccaaccaaag 7030052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 213036 - 212966
Alignment:
Q  96 tcataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaa 166  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||| ||  | |||||| |||||||    
T  213036 tcataaacatctactaacaacaaatcaccctcgctctccactaagaatttcatgcctccaccatcaaccaa 212966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 7025925 - 7026008
Alignment:
Q  98 ataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaagatacagcaactaa 181  Q
    ||||||||| |||||||||||||| || |||||||||||||||||||| || ||||| || |||| ||||| | |||| |||||    
T  7025925 ataaacatccgctaacaacaaatccccctcgctctccactaagaatttcatgtccccgccgccaatcaaaggttcagccactaa 7026008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 9159445 - 9159374
Alignment:
Q  110 taacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaagatacagcaactaa 181  Q
    |||||||||||| || |||||||||||||||||||| || | ||||||||||||||||| | |||| |||||    
T  9159445 taacaacaaatctccctcgctctccactaagaattttatgttcccaccaccaaccaaaggttcagccactaa 9159374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 193
Target Start/End: Original strand, 33541810 - 33541907
Alignment:
Q  96 tcataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaagatacagcaactaaccggacagtgga 193  Q
    |||||||||||  |||||||||||||||| | |||||||||||||||||| |  || |||||||||||||||||| |||| |||||| | ||||||||    
T  33541810 tcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactgaacagtgga 33541907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 18571269 - 18571343
Alignment:
Q  96 tcataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaagat 170  Q
    |||||||| || |||||||||| ||| || ||||||||||| |||||||| || | ||||||| |||||||||||    
T  18571269 tcataaacgtcagctaacaacagatcgccctcgctctccaccaagaatttcatgttcccaccaacaaccaaagat 18571343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 258
Target Start/End: Complemental strand, 9494784 - 9494619
Alignment:
Q  96 tcataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccacc---aaccaaagatacagcaactaaccggacagtgg 192  Q
    |||||||||||| ||||||||||||||||||| ||||| ||||||||||| || ||||| |||||   |||||||||| |||| ||||||  || ||||     
T  9494784 tcataaacatctactaacaacaaatcaccgtcactctcgactaagaatttgatgtcccccccaccagaaaccaaagattcagccactaactcgaaagtga 9494685  T
Q  193 aatcatcaggacaaacagtaacagtccgcccagttttatcaaccacataaggctggcctttgaaaa 258  Q
    | |||||  | | || |||| | ||||| |||||||| |  |||||||||||| | ||||||||||    
T  9494684 agtcatccagtccaagagtagctgtccgtccagttttgtgtaccacataaggccgccctttgaaaa 9494619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University