View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5900_high_15 (Length: 252)
Name: NF5900_high_15
Description: NF5900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5900_high_15 |
 | |
|
| [»] scaffold0649 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0649 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 5828 - 5592
Alignment:
| Q |
1 |
aatcaaaccaatgatatcataaataaaataatcagacaaggaattaaaccacataaataaactatcgtaaaaatttgaagtaaatcgtaaagaagaactt |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5828 |
aatcaaaccaatggtatcataaataaaataatcagacaaggaattaaaccacgtaaataaactatcgtaagaatttgaagtaaatcgtaaagaagaactt |
5729 |
T |
|
| Q |
101 |
actttcaacaagcagaaaccaaactttcaatataatccttggcaaccagccgatatatgccacgggtaagatcacttcgctctactctattatctttctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5728 |
actttcaacaagcagaaaccaaactttcaatataatccttggcaaccagccgatatatgccacgggtaagatcacttcgctctactctattatctttctt |
5629 |
T |
|
| Q |
201 |
attatagcaaactacgtgtcctcgatcactcactaat |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5628 |
attatagcaaactacgtgtcctcgatcactcactaat |
5592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 21021030 - 21021087
Alignment:
| Q |
78 |
aagtaaatcgtaaagaagaacttactttcaacaagcagaaaccaaactttcaatataat |
136 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
21021030 |
aagtaaatcgtaaa-aagaacttactttcaacaagttgaaaccaaactttcaacataat |
21021087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 20967982 - 20967930
Alignment:
| Q |
94 |
agaacttactttcaacaagcagaaaccaaactttcaatataatccttggcaac |
146 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |
|
|
| T |
20967982 |
agaacttactttcaacaagttgaaaccaaactttcgatataatcctttgcaac |
20967930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 20980958 - 20980912
Alignment:
| Q |
1 |
aatcaaaccaatgatatcataaataaaataatcagacaaggaattaaac |
49 |
Q |
| |
|
||||||||||| | |||||||||||||||||| ||||||||||||||| |
|
|
| T |
20980958 |
aatcaaaccaaaggtatcataaataaaataat--gacaaggaattaaac |
20980912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 20980781 - 20980729
Alignment:
| Q |
178 |
cgctctactctattatctttcttattatagcaaactacgtgtcctcgatcact |
230 |
Q |
| |
|
||||||||| ||| ||||||| | ||||||| ||||||||||||| ||||||| |
|
|
| T |
20980781 |
cgctctactttatcatctttcctgttatagcgaactacgtgtccttgatcact |
20980729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 6113403 - 6113352
Alignment:
| Q |
89 |
aaagaagaacttactttcaacaagcagaaaccaaactttcaatataatcctt |
140 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||| ||||| |
|
|
| T |
6113403 |
aaagaagaacttactatcaacaagtcgaaaccaaactttcaatatactcctt |
6113352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 19645455 - 19645501
Alignment:
| Q |
96 |
aacttactttcaacaagcagaaaccaaactttcaatataatccttgg |
142 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
19645455 |
aacttactttcaacaagttgaaaccaaactttcaacataatccttgg |
19645501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 20057825 - 20057877
Alignment:
| Q |
89 |
aaagaagaacttactttcaacaagcagaaaccaaactttcaatataatccttg |
141 |
Q |
| |
|
||||||||||||||| |||||||| ||| |||| ||||||| |||||||||| |
|
|
| T |
20057825 |
aaagaagaacttactatcaacaagttgaagccaagctttcaacataatccttg |
20057877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 22070404 - 22070360
Alignment:
| Q |
95 |
gaacttactttcaacaagcagaaaccaaactttcaatataatcct |
139 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
22070404 |
gaacttactttcaacaataagaaatcaaactttcaacataatcct |
22070360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 22524934 - 22524982
Alignment:
| Q |
90 |
aagaagaacttactttcaacaagcagaaaccaaactttcaatataatcc |
138 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| ||||||| ||||||| |
|
|
| T |
22524934 |
aagaagaacttactttcaagaagttgaaaccaagctttcaacataatcc |
22524982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 29597330 - 29597379
Alignment:
| Q |
93 |
aagaacttactttcaacaagcagaaaccaaactttcaatataatccttgg |
142 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||| ||||||||||| |
|
|
| T |
29597330 |
aagaacttactttcaacaaatcgaagccaaactttcaacataatccttgg |
29597379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University