View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5900_high_21 (Length: 220)
Name: NF5900_high_21
Description: NF5900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5900_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 22915541 - 22915342
Alignment:
| Q |
1 |
agctaattcacaataaatctgtatctaaataacatttgctaaaatttagctacagtatgtttcgtagttaatatccaattttcttgtagtcaaataaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22915541 |
agctaattcacaataaatctgtatctaaataacatttgctaaaatttagctaaaatatgtttcgtagttaatatccaattttctt---gtcaaataaata |
22915445 |
T |
|
| Q |
101 |
aattatttcgttacataatttaatgaaattatttgtctttttctctaatattaattattattttggtctggacaagtcaaaatgacctttgacccattta |
200 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||||||| ||| |||| | |||||| |
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| T |
22915444 |
aattattttgttatataatttaatgaaattatttgtctttttctataatattaattattattttattcttgaccggtcaaaaggacatttggctcattta |
22915345 |
T |
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