View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5900_high_3 (Length: 462)
Name: NF5900_high_3
Description: NF5900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5900_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 16 - 447
Target Start/End: Original strand, 9425939 - 9426370
Alignment:
| Q |
16 |
attagttacagtttgcatgtgattatacaggttgcactgggtagaaaaagttatatatccatgcaacatttatgttttaaatgacccctacacaaaattg |
115 |
Q |
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| T |
9425939 |
attaattacaatttgcatgtgattatacaggtagcactgggtaggaaaagttatatctccatgcaacatttatgttttaaatgacccctacacaaaattg |
9426038 |
T |
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| Q |
116 |
acccctccattttcgtgtgcacatgtgaaatcaaaagggaaatatacttgaaatctttgaaaaagtgtcccctgcgtaagatgctctacattgattaaaa |
215 |
Q |
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| T |
9426039 |
acccctccattttcgtgtgcacatgtgaaatcaaaagggaaatatacttgaaatctttgaaaaagtgtcccctgcgtaagatgctctacattgattaaag |
9426138 |
T |
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| Q |
216 |
aatagtgaaagtaacagttgaatgatgaaggaaaataaaaacaataggatgctttttacctttcccctcacattcattttttccttatactccaactttt |
315 |
Q |
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| T |
9426139 |
aatagtgaaagtaacagttgaatgatgaaggaaaataaaaacaataggatgctttttacctttcccctcacattcattttttccttatactccaactttt |
9426238 |
T |
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| Q |
316 |
cgaatgtttttgcttgtgaaccttgatattcnnnnnnnnnntgttatggatatgctactcccacgtggattgttaacaagaggtttcaaataacaatgta |
415 |
Q |
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|||||||||||||||||||||||| | | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9426239 |
cgaatgtttttgcttgtgaaccttaaaagtttaactctatatgttatggatatgctactcccacgtggattgttaacaagaggtttcaaataacaatgta |
9426338 |
T |
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| Q |
416 |
gggtcattagttattaaatgtgatgtgataaa |
447 |
Q |
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| T |
9426339 |
gggtcattagttattaaatgtgatgtgataaa |
9426370 |
T |
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