View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5900_high_7 (Length: 335)

Name: NF5900_high_7
Description: NF5900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5900_high_7
NF5900_high_7
[»] chr4 (4 HSPs)
chr4 (1-320)||(52999826-53000146)
chr4 (34-132)||(8898903-8899001)
chr4 (34-132)||(31371334-31371432)
chr4 (195-235)||(16441781-16441821)
[»] chr2 (1 HSPs)
chr2 (15-130)||(31602873-31602990)
[»] chr3 (4 HSPs)
chr3 (27-132)||(4285248-4285354)
chr3 (34-128)||(8890891-8890985)
chr3 (34-140)||(12881760-12881866)
chr3 (89-169)||(3153308-3153389)
[»] chr1 (2 HSPs)
chr1 (34-127)||(45963064-45963157)
chr1 (65-130)||(37627774-37627839)
[»] chr7 (1 HSPs)
chr7 (27-102)||(10235046-10235122)


Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 53000146 - 52999826
Alignment:
Q  1 tgataaaccataataatatgtttaattattgttttgagatacattcatttatttagagaggaaa-atgaaataccaaatgaacaccttatccttaggaat 99  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  53000146 tgataaaccatgataatatgtttaattattgttttgagatacattcatttatttagagaggaaacatgaaataccaaatgaacaccttgtccttaggaat 53000047  T
Q  100 gaactgattataacatagagaaatagatagggatgccaagggtctacctttatgattaaagccacaatcctaaatcaccatctatttctctatttttcat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53000046 gaactgattataacatagagaaatagatagggatgccaagggtctaccattatgattaaagccacaatcctaaatcaccatctatttctctatttttcat 52999947  T
Q  200 ttagaaagttggaggttcaaggcaagagtcaagcatctgaagcctcaaagagggttttcttcttccaatttgttcttgagtatgtttttattttatttgt 299  Q
    | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52999946 tcagaaagttggaggttcaaggcaagagtcaagcatctgaagccttaaagagggttttcttcttccaatttgttcttgagtatgtttttattttatttgt 52999847  T
Q  300 ggattcaatcatttaaagttt 320  Q
    |||||||||||||||||||||    
T  52999846 ggattcaatcatttaaagttt 52999826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 132
Target Start/End: Original strand, 8898903 - 8899001
Alignment:
Q  34 ttgagatacattcatttatttagagaggaaa-atgaaataccaaatgaacaccttatccttaggaatgaactgattataacatagagaaatagataggga 132  Q
    ||||||||||||||| ||||  ||||||||| ||||||||||||| ||| |  || ||||||| |||||| | ||||||| |||||||||||||||||||    
T  8898903 ttgagatacattcatgtattgggagaggaaatatgaaataccaaa-gaatatattgtccttagaaatgaattcattataaaatagagaaatagataggga 8899001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 31371432 - 31371334
Alignment:
Q  34 ttgagatacattcatttatttagagaggaaa-atgaaataccaaatgaacaccttatccttaggaatgaactgattataacatagagaaatagataggga 132  Q
    |||||||| |||||| ||||||||||| ||| |||||||||| || |||||| || ||||||  || |||||  |||||| |||||||||||||||||||    
T  31371432 ttgagatagattcatgtatttagagagaaaatatgaaatacctaa-gaacacattgtccttaaaaaagaactccttataaaatagagaaatagataggga 31371334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 16441821 - 16441781
Alignment:
Q  195 ttcatttagaaagttggaggttcaaggcaagagtcaagcat 235  Q
    |||||||||||||||||  || |||||||||||||||||||    
T  16441821 ttcatttagaaagttggtagtacaaggcaagagtcaagcat 16441781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 31602990 - 31602873
Alignment:
Q  15 aatatgtttaattattgttttgaga-tacattcatttatttagagaggaaa-atgaaataccaaatgaacaccttatccttaggaatgaactgattataa 112  Q
    |||| |||| ||||||||||||||| ||||||||| ||||   ||| |||| ||||||||||||||| |||| || | |||||||||||| |||||||||    
T  31602990 aataagtttgattattgttttgagaatacattcatgtattctaagatgaaacatgaaataccaaatgcacactttgttcttaggaatgaattgattataa 31602891  T
Q  113 catagagaaatagatagg 130  Q
     |||||||||||||||||    
T  31602890 aatagagaaatagatagg 31602873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 4285248 - 4285354
Alignment:
Q  27 tattgttttgagatacattcatttatttagagaggaaa-atgaaataccaaatgaacaccttatccttaggaatgaactgattataacatagagaaatag 125  Q
    |||||||||||||||||||||| ||||| ||||||||| |||||||| ||||||||| |||| | ||||| ||| || | ||||||  ||| ||||||||    
T  4285248 tattgttttgagatacattcatgtatttcgagaggaaacatgaaatatcaaatgaactccttgtacttagaaattaattcattatagaataaagaaatag 4285347  T
Q  126 ataggga 132  Q
    |||||||    
T  4285348 ataggga 4285354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 128
Target Start/End: Original strand, 8890891 - 8890985
Alignment:
Q  34 ttgagatacattcatttatttagagaggaaa-atgaaataccaaatgaacaccttatccttaggaatgaactgattataacatagagaaatagata 128  Q
    |||||||||||||||  |||  ||||||||| ||||| ||||||| |||||| || ||||||| |||||| | ||||||| |||||||||||||||    
T  8890891 ttgagatacattcatgaattatgagaggaaacatgaattaccaaa-gaacacgttgtccttagaaatgaattcattataaaatagagaaatagata 8890985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 12881760 - 12881866
Alignment:
Q  34 ttgagatacattcatttatttagagaggaaa-atgaaataccaaatgaacaccttatccttaggaatgaactgattataacatagagaaatagataggga 132  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||| |||||| || ||||||| |||||| | ||||||  |||||| |||  ||||| |    
T  12881760 ttgagatacattcatgtattttgagaggaaacatgaaataccaaa-gaacacattttccttagaaatgaattcattatagaatagaggaatgtataggaa 12881858  T
Q  133 tgccaagg 140  Q
    ||| ||||    
T  12881859 tgctaagg 12881866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 3153389 - 3153308
Alignment:
Q  89 tccttaggaatgaactgattataacatagagaaatagatag-ggatgccaagggtctacctttatgattaaagccacaatcc 169  Q
    |||||| ||||||||| ||||||| |||||||||||||||| | ||| ||| ||| || | |||||||| || |||||||||    
T  3153389 tccttaagaatgaactcattataaaatagagaaatagatagagaatgtcaaaggtttatcattatgattcaaaccacaatcc 3153308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 45963064 - 45963157
Alignment:
Q  34 ttgagatacattcatttatttagagaggaaa-atgaaataccaaatgaacaccttatccttaggaatgaactgattataacatagagaaatagat 127  Q
    ||||||||||||||| ||||| |||| |||| ||||||||||||| ||||||||| ||||||||||| || | ||||||| ||||||||||||||    
T  45963064 ttgagatacattcatgtattttgagatgaaacatgaaataccaaa-gaacaccttgtccttaggaataaattcattataaaatagagaaatagat 45963157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 37627774 - 37627839
Alignment:
Q  65 atgaaataccaaatgaacaccttatccttaggaatgaactgattataacatagagaaatagatagg 130  Q
    ||||| ||||||||||| ||||| |||||||||||||| | | ||||  |||| ||||||||||||    
T  37627774 atgaagtaccaaatgaaaaccttgtccttaggaatgaattcaatatagaatagtgaaatagatagg 37627839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 10235046 - 10235122
Alignment:
Q  27 tattgttttgagatacattcatttatttagagaggaaa-atgaaataccaaatgaacaccttatccttaggaatgaa 102  Q
    |||| ||||||||||||||||| ||||  | ||||||| ||||||||||||||||||||| | || |||||||||||    
T  10235046 tattattttgagatacattcatgtattacgggaggaaacatgaaataccaaatgaacaccctgtctttaggaatgaa 10235122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University