View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5900_high_9 (Length: 330)
Name: NF5900_high_9
Description: NF5900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5900_high_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 32250101 - 32250423
Alignment:
| Q |
8 |
catcacagagtgtatatttgttggtatctttacatatggaatcatgactgcagttaaatgaatgagaacaaatgtatatggcatgggatggtcccatgca |
107 |
Q |
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|||||||||| |||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32250101 |
catcacagagggtatatttgttgctatcttcacatatggaatcctgactgcagttaaatgaatgagaacaaatatatatggcatgggatggtcccatgca |
32250200 |
T |
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| Q |
108 |
ttctgcgtcgattctttacatgttgatatcattacttctttttcactctactttattcatttacagttttcattaagccataacagtgttgctcagactc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32250201 |
ttctgcgtcgattctttacatgttgatatcattacttctttttcactctactttattcatttacagttttcattaagccgtaacagtgttgctcagactc |
32250300 |
T |
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| Q |
208 |
aaatatatagatgtatggagtaattaaagtagaaattctagcttatagtacctctcttggttattatcaaactgaagcattcacaccagaaacaacctaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32250301 |
aaatatatagatgtatggagtaattaaagtagaaattctagcttatagtacctctcttggttattatcaaactgaagccttcacaccagaaacaacctaa |
32250400 |
T |
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| Q |
308 |
ctcaaaggttaaaacatttttac |
330 |
Q |
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|||||||||||||||||| |||| |
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| T |
32250401 |
ctcaaaggttaaaacattgttac |
32250423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 32244392 - 32244714
Alignment:
| Q |
8 |
catcacagagtgtatatttgttggtatctttacatatggaatcatgactgcagttaaatgaatgagaacaaatgtatatggcatgggatggtcccatgca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32244392 |
catcacagagtgtatatttgttggtatctttacatatggaatcatgactgcagttaaatgaatgagaacaaatgtatatggcatgggatggtcccatgca |
32244491 |
T |
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| Q |
108 |
ttctgcgtcgattctttacatgttgatatcattacttctttttcactctactttattcatttacagttttcattaagccataacagtgttgctcagactc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32244492 |
ttctgcgtcgattctttacatgttgatatcattacttctttttcactttacttaattcatttacagttttcattaagcagtaacagtgttgctcagactc |
32244591 |
T |
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| Q |
208 |
aaatatatagatgtatggagtaattaaagtagaaattctagctt-atagtacctctcttggttattatcaaactgaagcattcacaccagaaacaaccta |
306 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| ||||||||||| ||| ||| ||| || |||||||| | || |
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| T |
32244592 |
aaatatatagatgtatgtagtgattaaagtagaaattctagcttaatagtacctctctttgttattatcaatctgtagccttcgcaacagaaacagcata |
32244691 |
T |
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| Q |
307 |
actcaaaggttaaaacatttttac |
330 |
Q |
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||| ||| |||||||||||||| |
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| T |
32244692 |
act-taagcgtaaaacatttttac |
32244714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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