View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5900_low_1 (Length: 924)

Name: NF5900_low_1
Description: NF5900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5900_low_1
NF5900_low_1
[»] chr1 (5 HSPs)
chr1 (7-906)||(4367261-4368160)
chr1 (677-811)||(4017554-4017688)
chr1 (677-807)||(10218126-10218256)
chr1 (706-811)||(4015736-4015841)
chr1 (707-802)||(21897327-21897422)
[»] chr3 (1 HSPs)
chr3 (747-867)||(3624916-3625036)
[»] chr7 (9 HSPs)
chr7 (641-773)||(29105856-29105988)
chr7 (675-810)||(29477208-29477343)
chr7 (695-850)||(29922857-29923012)
chr7 (675-773)||(29480368-29480466)
chr7 (719-810)||(47479630-47479721)
chr7 (642-850)||(29074123-29074330)
chr7 (679-772)||(29436502-29436595)
chr7 (692-773)||(29446534-29446615)
chr7 (695-772)||(29454982-29455059)
[»] chr4 (1 HSPs)
chr4 (740-849)||(53430890-53430999)


Alignment Details
Target: chr1 (Bit Score: 864; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 864; E-Value: 0
Query Start/End: Original strand, 7 - 906
Target Start/End: Complemental strand, 4368160 - 4367261
Alignment:
Q  7 tccaagaatatgctgtaggtgtttgttgttatttgataatgatgatggtatgtgcaggttaatatcataaaataatatgaaccataataattgatcacgt 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4368160 tccaacaatatgctgtaggtgtttgttgttatttgataatgatgatggtatgtgctggttaatatcataaaataatatgaaccataataattgatcacgt 4368061  T
Q  107 tggatacaactatataattaaagaatacatctaacataacagctgagtttgattgctctttatatttattattattgtttaataaactttatgccagtgg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4368060 tggatacaactatataattaaagaatacatctaacataacagctgagtttgattgctctttatatttattattattgtttaataaactttatgccagtgg 4367961  T
Q  207 ggtttgaagccagctttgatgtggtcctatggtctattaaattatcctaactgctcaactttattgtaaagctctgaatctaatacattaaactaagttt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367960 ggtttgaagccagctttgatgtggtcctatggtctattaaattatcctaactgctcaactttattgtaaagctctgaatctaatacattaaactaagttt 4367861  T
Q  307 ttatttttatatacttttcttcctcttcaattactattttctctccccaaattacattttaaaggggtaaacttttcaatctcaagtcaaagtgaactgt 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367860 ttatttttatatacttttcttcctcttcaattactattttctctcctcaaattacattttaaaggggtaaacttttcaatctcaagtcaaagtgaactgt 4367761  T
Q  407 tttgaagagtagagttaatgtacctctttaaaggccttgatttgtaagcttgtcctataattttatatgggatggaaactgaaatggaagttattgtgta 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  4367760 tttgaagagtagagttaatgtacctctttaaaggccttgatttgtaagcttgtcctatagttttatatgggatggaaactgaaatggaagttattgtgca 4367661  T
Q  507 ataatagttttgcgctttgtacttgcatatgaaagtcacacatgatataacttcatttcccacaacacatttgcaacagcaatatacaatatagccttgt 606  Q
    ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367660 atactagttttgcactttgtacttgcatatgaaagtcacacatgatataacttcatttcccacaacacatttgcaacagcaatatacaatatagccttgt 4367561  T
Q  607 ttttaggtttcaaccacaacaccgctgctttgagatgaatatccaatcagctacgtctatggctttatcgccggtggtcctctctgatgatctcattgct 706  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367560 ttttaggtttcaaccacaacaccgctactttgagatgaatatccaatcagctacgtctatggctttatcgccggtggtcctctctgatgatctcattgct 4367461  T
Q  707 gaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaaacctcatctgtgatcccgcctttgtgaaactac 806  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4367460 gaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaaacctcatctctgatcccgcctttgtgaaactac 4367361  T
Q  807 accttagtagatcagcaacacaaaatctgctcttcacactaatctcgcaccacatcacagatctcacaccaggcgattcctcggatggcagtgacgatgt 906  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367360 accttagtagatcagcaacacaaaatctgctcttcacactaatctcgcaccacatcacagatctcacaccaggcgattcctcggatggcagtgacgatgt 4367261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 677 - 811
Target Start/End: Complemental strand, 4017688 - 4017554
Alignment:
Q  677 ccggtggtcctctctgatgatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaaacc 776  Q
    |||| ||||||||| || |||||||| |  ||||||||||||||||| ||||| |||| |||||| | ||| |||||||| ||||| |||||||||| ||    
T  4017688 ccggcggtcctctccgaggatctcatcgtcgaggtactttcgtttcttcccgtgaaatctcttctccaatttaggtgtgtgagtaaatcttggaaaaccc 4017589  T
Q  777 tcatctgtgatcccgcctttgtgaaactacacctt 811  Q
    | || | ||||||| | ||||||||| | ||||||    
T  4017588 taatttctgatcccacttttgtgaaattgcacctt 4017554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 677 - 807
Target Start/End: Original strand, 10218126 - 10218256
Alignment:
Q  677 ccggtggtcctctctgatgatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaaacc 776  Q
    |||| ||||||||| || |||||| |||| ||||||||||| ||||| || || |||| |||| || | ||||||||||| ||||| |||||||||| ||    
T  10218126 ccggcggtcctctccgaagatctcgttgccgaggtactttcctttcttccggtgaaatctcttgtttgcttcaggtgtgtgagtaaatcttggaaaaccc 10218225  T
Q  777 tcatctgtgatcccgcctttgtgaaactaca 807  Q
    | || | ||| ||| | ||||||||| ||||    
T  10218226 taatttctgaacccacttttgtgaaattaca 10218256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 706 - 811
Target Start/End: Complemental strand, 4015841 - 4015736
Alignment:
Q  706 tgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaaacctcatctgtgatcccgcctttgtgaaacta 805  Q
    |||||||||||| ||||| || || | || |||| |||||||||||||||| |||||||||||||||| ||| || |  ||| || ||||||||||| |     
T  4015841 tgaggtactttcatttcttccagtgagatctcttgttcgattcaggtgtgtgagtaagtcttggaaaaccctaatttccgattccacctttgtgaaattg 4015742  T
Q  806 cacctt 811  Q
    ||||||    
T  4015741 cacctt 4015736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 707 - 802
Target Start/End: Complemental strand, 21897422 - 21897327
Alignment:
Q  707 gaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaaacctcatctgtgatcccgcctttgtgaaa 802  Q
    ||||||||||||||||| || |||| || |||| |||||||||||| ||| ||||||| |||||||| ||| || |  || ||| |||||||||||    
T  21897422 gaggtactttcgtttcttcctgttagatctcttattcgattcaggtctgtaagtaagtgttggaaaaccctaatttccgaccccacctttgtgaaa 21897327  T

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Target: chr3 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 747 - 867
Target Start/End: Original strand, 3624916 - 3625036
Alignment:
Q  747 tcaggtgtgtcagtaagtcttggaaaaacctcatctgtgatcccgcctttgtgaaactacaccttagtagatcagcaacacaaaatctgctcttcacact 846  Q
    |||||||||| ||||| ||||||||||  ||||||| ||||||||| || |||||| | ||||| |  ||||||||| ||| |||||  |||||||||||    
T  3624916 tcaggtgtgtgagtaaatcttggaaaacactcatctctgatcccgctttcgtgaaattgcacctcaagagatcagcatcacgaaatccactcttcacact 3625015  T
Q  847 aatctcgcaccacatcacaga 867  Q
    |||| |||| |||||||||||    
T  3625016 aatcacgcatcacatcacaga 3625036  T

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Target: chr7 (Bit Score: 45; Significance: 4e-16; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 641 - 773
Target Start/End: Original strand, 29105856 - 29105988
Alignment:
Q  641 atgaatatccaatcagctacgtctatggctttatcgccggtggtcctctctgatgatctcattgctgaggtactttcgtttctccccgttaaatatcttc 740  Q
    |||||||| ||||| || | |||||||||| | ||| ||||||| ||| | ||||||||||| || || || ||||| || || ||||||| || |||||    
T  29105856 atgaatatacaatcggcaaagtctatggctctgtcgtcggtggttctccccgatgatctcatcgcagaagttctttccttccttcccgttatatttcttc 29105955  T
Q  741 ttcgattcaggtgtgtcagtaagtcttggaaaa 773  Q
    ||||||| |||| |||||| |||||||||||||    
T  29105956 ttcgatttaggtctgtcagcaagtcttggaaaa 29105988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 675 - 810
Target Start/End: Complemental strand, 29477343 - 29477208
Alignment:
Q  675 cgccggtggtcctctctgatgatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaaa 774  Q
    |||||||||||||  |||| |||||||| || ||| ||||||| || || ||||| |||| |||| ||||| |||  ||||| || ||||||||||||      
T  29477343 cgccggtggtccttcctgacgatctcatcgcagagttactttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtcttggaaatc 29477244  T
Q  775 cctcatctgtgatcccgcctttgtgaaactacacct 810  Q
    ||| |||| |||||||  |||||||||| |||||||    
T  29477243 cctaatctctgatcccagctttgtgaaattacacct 29477208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 695 - 850
Target Start/End: Complemental strand, 29923012 - 29922857
Alignment:
Q  695 gatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaaacctcatctgtgatcccgcct 794  Q
    |||||||| ||||| |||||||| ||||| || || |||  |||||||||||||| | |||| ||||||||||||||||  |||||||  |||||| | |    
T  29923012 gatctcatcgctgaagtactttcctttcttccggtgaaacctcttcttcgattcaagagtgttagtaagtcttggaaaatactcatctccgatcccacat 29922913  T
Q  795 ttgtgaaactacaccttagtagatcagcaacacaaaatctgctcttcacactaatc 850  Q
    | |||||| | ||||| |  |||||||||  ||||||||  | |||||| ||||||    
T  29922912 tcgtgaaattgcacctcaagagatcagcagtacaaaatcctcacttcaccctaatc 29922857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 675 - 773
Target Start/End: Complemental strand, 29480466 - 29480368
Alignment:
Q  675 cgccggtggtcctctctgatgatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaa 773  Q
    |||||||||||||  |||||||||||||  | ||| ||||||| || || ||||| |||| || | ||||||||| ||||||| |||||||||||||||    
T  29480466 cgccggtggtccttcctgatgatctcatcacagagttactttccttccttcccgtcaaatctcctgttcgattcaagtgtgtctgtaagtcttggaaaa 29480368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 719 - 810
Target Start/End: Complemental strand, 47479721 - 47479630
Alignment:
Q  719 tttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaaacctcatctgtgatcccgcctttgtgaaactacacct 810  Q
    ||||| |||||| ||| |||| |||||||||| ||||| |||||||||||||||| ||| || |  ||||| ||||| |||||||| |||||    
T  47479721 tttcttcccgttgaatttcttattcgattcagttgtgtaagtaagtcttggaaaaccctaatttccgatcctgccttcgtgaaactgcacct 47479630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 642 - 850
Target Start/End: Original strand, 29074123 - 29074330
Alignment:
Q  642 tgaatatccaatcagctacgtctatggctttatcgccggtggtcctctctgatgatctcattgctgaggtactttcgtttctccccgttaaatatcttct 741  Q
    ||||||| ||||| || | |||||||||| | ||| ||||||| ||  | ||||||||||| || || || ||||| || || ||| ||| || ||||||    
T  29074123 tgaatatacaatcggcaaagtctatggctctgtcgtcggtggttcttcccgatgatctcatcgcagaagttctttccttccttccc-ttatatttcttct 29074221  T
Q  742 tcgattcaggtgtgtcagtaagtcttggaaaaacctcatctgtgatcccgcctttgtgaaactacaccttagtagatcagcaacacaaaatctgctcttc 841  Q
    |||||| |||| |||||| |||||||||||||  || || |   |||| ||||| |||||| | || || |  |||||||||||||||||||  | ||||    
T  29074222 tcgatttaggtctgtcagcaagtcttggaaaactcttatttccaatcctgccttcgtgaaattgcatctcaagagatcagcaacacaaaatccacacttc 29074321  T
Q  842 acactaatc 850  Q
    ||| |||||    
T  29074322 acagtaatc 29074330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 772
Target Start/End: Complemental strand, 29436595 - 29436502
Alignment:
Q  679 ggtggtcctctctgatgatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaa 772  Q
    |||||| ||| |||| ||||||||  | ||| ||||| ||||||| ||||||||||   |||||| ||| || ||||||||| |||||||||||    
T  29436595 ggtggttctccctgacgatctcatcaccgagatacttccgtttcttcccgttaaatccattcttcaatttagatgtgtcagtgagtcttggaaa 29436502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 692 - 773
Target Start/End: Complemental strand, 29446615 - 29446534
Alignment:
Q  692 gatgatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaa 773  Q
    ||||||||||| || |||||  |||| || || ||||| |||| |||| ||||||||| |||||||| ||||| ||||||||    
T  29446615 gatgatctcatcgccgaggttttttccttccttcccgtcaaatctcttgttcgattcaagtgtgtcaataagtattggaaaa 29446534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 772
Target Start/End: Complemental strand, 29455059 - 29454982
Alignment:
Q  695 gatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaa 772  Q
    |||||||| |||||||||||||| | ||| ||||| |||  |||||||| ||||||||| || | ||||| |||||||    
T  29455059 gatctcatcgctgaggtactttcttatcttcccgtcaaaattcttcttcaattcaggtgcgtgaataagtattggaaa 29454982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 740 - 849
Target Start/End: Complemental strand, 53430999 - 53430890
Alignment:
Q  740 cttcgattcaggtgtgtcagtaagtcttggaaaaacctcatctgtgatcccgcctttgtgaaactacaccttagtagatcagcaacacaaaatctgctct 839  Q
    |||| |||||| || ||||||||||||||||||| ||||||||  ||  |||| ||||||||| | ||||| ||||||||| |||| | |||||  |  |    
T  53430999 cttcaattcagatgcgtcagtaagtcttggaaaaccctcatctccgactccgcttttgtgaaattgcacctcagtagatcatcaactcgaaatcctcaat 53430900  T
Q  840 tcacactaat 849  Q
    ||||||||||    
T  53430899 tcacactaat 53430890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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