View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5900_low_11 (Length: 321)
Name: NF5900_low_11
Description: NF5900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5900_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 52549046 - 52549114
Alignment:
| Q |
12 |
atgaatacataaaccacaacttcaatgatatatccatccttaccatatagtagttaacaaatgtgccaccatt |
84 |
Q |
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| T |
52549046 |
atgaatacataaaccacaacttcaatgatttatcc----ttaccatatagtagttaacgaatgtgccaccatt |
52549114 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 17126528 - 17126450
Alignment:
| Q |
52 |
taccatatagtagttaacaaatgtgccaccattttgtacaaatcttgcaacagagaatgccacatcttctgctggtcta |
130 |
Q |
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| T |
17126528 |
taccatatagtagttaacatatgagccgcgattctgtacgaatctggcaaccgagaatgccaagtcttctgctggtcta |
17126450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 313
Target Start/End: Complemental strand, 17126333 - 17126254
Alignment:
| Q |
234 |
taccagccagtccaattctcagtccacattttgggtttgttgtttttgttgggcttgtagttttcacagtagtaaccatt |
313 |
Q |
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| T |
17126333 |
taccagccagtccaattttctgtccacatttttggtttgtagttcttgttgggagagaagttttcacagtaatatccatt |
17126254 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 319
Target Start/End: Complemental strand, 5230749 - 5230659
Alignment:
| Q |
229 |
tgacctaccagccagtccaattctcagtccacattttgggtttgttgtttttgttgggcttgtagttttcacagtagtaaccattgcaagt |
319 |
Q |
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| T |
5230749 |
tgacttaccagccagaccaattctcagtccacattttgggtttaaagttctcgttgggagtgaaattttcacagtaatatccattgcaagt |
5230659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 5230945 - 5230867
Alignment:
| Q |
52 |
taccatatagtagttaacaaatgtgccaccattttgtacaaatcttgcaacagagaatgccacatcttctgctggtcta |
130 |
Q |
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| T |
5230945 |
taccatatagtagttaacaaaggagccacgattttgtatgaatctagcaactgagtatgccaagtcttcagttggtcta |
5230867 |
T |
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