View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5900_low_17 (Length: 252)

Name: NF5900_low_17
Description: NF5900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5900_low_17
NF5900_low_17
[»] scaffold0649 (1 HSPs)
scaffold0649 (1-237)||(5592-5828)
[»] chr2 (4 HSPs)
chr2 (78-136)||(21021030-21021087)
chr2 (94-146)||(20967930-20967982)
chr2 (1-49)||(20980912-20980958)
chr2 (178-230)||(20980729-20980781)
[»] chr4 (1 HSPs)
chr4 (89-140)||(6113352-6113403)
[»] chr7 (4 HSPs)
chr7 (96-142)||(19645455-19645501)
chr7 (89-141)||(20057825-20057877)
chr7 (95-139)||(22070360-22070404)
chr7 (90-138)||(22524934-22524982)
[»] chr5 (1 HSPs)
chr5 (93-142)||(29597330-29597379)


Alignment Details
Target: scaffold0649 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 5828 - 5592
Alignment:
Q  1 aatcaaaccaatgatatcataaataaaataatcagacaaggaattaaaccacataaataaactatcgtaaaaatttgaagtaaatcgtaaagaagaactt 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  5828 aatcaaaccaatggtatcataaataaaataatcagacaaggaattaaaccacgtaaataaactatcgtaagaatttgaagtaaatcgtaaagaagaactt 5729  T
Q  101 actttcaacaagcagaaaccaaactttcaatataatccttggcaaccagccgatatatgccacgggtaagatcacttcgctctactctattatctttctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5728 actttcaacaagcagaaaccaaactttcaatataatccttggcaaccagccgatatatgccacgggtaagatcacttcgctctactctattatctttctt 5629  T
Q  201 attatagcaaactacgtgtcctcgatcactcactaat 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  5628 attatagcaaactacgtgtcctcgatcactcactaat 5592  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 21021030 - 21021087
Alignment:
Q  78 aagtaaatcgtaaagaagaacttactttcaacaagcagaaaccaaactttcaatataat 136  Q
    |||||||||||||| ||||||||||||||||||||  |||||||||||||||| |||||    
T  21021030 aagtaaatcgtaaa-aagaacttactttcaacaagttgaaaccaaactttcaacataat 21021087  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 20967982 - 20967930
Alignment:
Q  94 agaacttactttcaacaagcagaaaccaaactttcaatataatccttggcaac 146  Q
    |||||||||||||||||||  |||||||||||||| ||||||||||| |||||    
T  20967982 agaacttactttcaacaagttgaaaccaaactttcgatataatcctttgcaac 20967930  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 20980958 - 20980912
Alignment:
Q  1 aatcaaaccaatgatatcataaataaaataatcagacaaggaattaaac 49  Q
    ||||||||||| | ||||||||||||||||||  |||||||||||||||    
T  20980958 aatcaaaccaaaggtatcataaataaaataat--gacaaggaattaaac 20980912  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 20980781 - 20980729
Alignment:
Q  178 cgctctactctattatctttcttattatagcaaactacgtgtcctcgatcact 230  Q
    ||||||||| ||| ||||||| | ||||||| ||||||||||||| |||||||    
T  20980781 cgctctactttatcatctttcctgttatagcgaactacgtgtccttgatcact 20980729  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 6113403 - 6113352
Alignment:
Q  89 aaagaagaacttactttcaacaagcagaaaccaaactttcaatataatcctt 140  Q
    ||||||||||||||| ||||||||  |||||||||||||||||||| |||||    
T  6113403 aaagaagaacttactatcaacaagtcgaaaccaaactttcaatatactcctt 6113352  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 19645455 - 19645501
Alignment:
Q  96 aacttactttcaacaagcagaaaccaaactttcaatataatccttgg 142  Q
    |||||||||||||||||  |||||||||||||||| |||||||||||    
T  19645455 aacttactttcaacaagttgaaaccaaactttcaacataatccttgg 19645501  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 20057825 - 20057877
Alignment:
Q  89 aaagaagaacttactttcaacaagcagaaaccaaactttcaatataatccttg 141  Q
    ||||||||||||||| ||||||||  ||| |||| ||||||| ||||||||||    
T  20057825 aaagaagaacttactatcaacaagttgaagccaagctttcaacataatccttg 20057877  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 22070404 - 22070360
Alignment:
Q  95 gaacttactttcaacaagcagaaaccaaactttcaatataatcct 139  Q
    |||||||||||||||||  ||||| ||||||||||| ||||||||    
T  22070404 gaacttactttcaacaataagaaatcaaactttcaacataatcct 22070360  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 22524934 - 22524982
Alignment:
Q  90 aagaagaacttactttcaacaagcagaaaccaaactttcaatataatcc 138  Q
    ||||||||||||||||||| |||  |||||||| ||||||| |||||||    
T  22524934 aagaagaacttactttcaagaagttgaaaccaagctttcaacataatcc 22524982  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 29597330 - 29597379
Alignment:
Q  93 aagaacttactttcaacaagcagaaaccaaactttcaatataatccttgg 142  Q
    |||||||||||||||||||   ||| |||||||||||| |||||||||||    
T  29597330 aagaacttactttcaacaaatcgaagccaaactttcaacataatccttgg 29597379  T

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