View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5900_low_18 (Length: 251)
Name: NF5900_low_18
Description: NF5900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5900_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 1224161 - 1223942
Alignment:
| Q |
15 |
aaaccgcagaatttgttgctggatcaagcgaaagggattttgaagattgctgatttagggcttggaagagcttttactgtgccgttgaaaagttatactc |
114 |
Q |
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| T |
1224161 |
aaaccgcagaatttgttgctggatcaagcgaaagggattttgaagattgctgatttagggcttggaagagcttttactgtgccgttgaaaagttatactc |
1224062 |
T |
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| Q |
115 |
atgagattgttactctttggtatagagctcctgaggttttgcttggttcttctacttactctactggtgttgatatttggtctgttggatgtatctttgg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1224061 |
atgagattgttactctttggtatagagctcctgaggttttgcttggttcttctacttactctactagtgttgatatttggtctgttggatgtatctttgg |
1223962 |
T |
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| Q |
215 |
tgagtcatttccccgttcaa |
234 |
Q |
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|||||||||||||||||||| |
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| T |
1223961 |
tgagtcatttccccgttcaa |
1223942 |
T |
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