View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5900_low_21 (Length: 236)
Name: NF5900_low_21
Description: NF5900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5900_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 31 - 221
Target Start/End: Complemental strand, 1223888 - 1223698
Alignment:
| Q |
31 |
ttgaatactaaaagttaagttatttggatctgctatgagattaatcatcgagtcggtattagatgatctcggtggttaaattaagatcggatgggtcaat |
130 |
Q |
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| T |
1223888 |
ttgaatactaaaagttaagttatttggat-tgctatgagattaatcatcgagtcggtattagatgatctcggtggttaaattaagatgggatgggtcaat |
1223790 |
T |
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| Q |
131 |
tcacgttgaaagatg-nnnnnnngctaattcactataattagaattttggaccccgccaatgttgttaaatagcggtgtgttatattgttat |
221 |
Q |
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| T |
1223789 |
tcacgttgaaagatgttttttttgctaattcactataattaggattttggaccccgccaatgttgttaaatagtggtgtgttatattgttat |
1223698 |
T |
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