View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5900_low_5 (Length: 392)
Name: NF5900_low_5
Description: NF5900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5900_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 11 - 377
Target Start/End: Original strand, 43058801 - 43059169
Alignment:
| Q |
11 |
cataggggaaccagtggccttaacatcaaccacatccaaaaataacgtgttttcgaactgtcagcataaaaataggtgtagatgcaattgatttttatcc |
110 |
Q |
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| T |
43058801 |
cataggggaaccagtggccttaacatcaaccacatccaagaataacgtgttttggaactgtcagcataaaaataggtgtagatgcaattgatttttatcc |
43058900 |
T |
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| Q |
111 |
ggagaacacgaggttcgtgaatagagtttagaacatgactcta------atccacatgcgatgttggagtaagtggaggagatagggtttagttgtttgt |
204 |
Q |
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| T |
43058901 |
ggagaacacgaggtt---gaatagagtttagaacatgactctaaatctaatccacatgcgatgttggagtaagtggaggagatagggtttagttgtttgt |
43058997 |
T |
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| Q |
205 |
agcagttagtgcaaggaatgcattggaaccatataaggtcactaccggtatctatttgagcataaatttgattaaaatttgtcattcttctacttgtaaa |
304 |
Q |
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| T |
43058998 |
agtatttagtgcaaggaatgcattggaaccatgtaaggtcactaccggtatctatttgagcataaatttgattaaaatttgtcattcttctacttgtaaa |
43059097 |
T |
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| Q |
305 |
ctttcttcaactctcgggtgatgcattatgaattatttcttgagagcttaactatttcctcttttttctaatt |
377 |
Q |
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| T |
43059098 |
ctttcttcaactctc-ggtgatgcattatgaattatttcttgagagcttaactatttcctcttttttctaatt |
43059169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 65 - 268
Target Start/End: Original strand, 15798222 - 15798436
Alignment:
| Q |
65 |
gaactgtcagcataaaaataggtgtagatgcaattgatttttatccggagaacacgaggttcgtgaatagagtttagaacatgactctaatccacatgcg |
164 |
Q |
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| T |
15798222 |
gaaccgtcaacataagaatagttgtatttgcaattgatttg-atctggagaacacgaggtt---gaatagagtttagaacatgactctgatccacatgcg |
15798317 |
T |
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| Q |
165 |
atgttggagtaagtggaggag---------------atagggtttagttgtttgtagcagttagtgcaaggaatgcattggaaccatataaggtcactac |
249 |
Q |
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| T |
15798318 |
atgttggagaaagtggaggagctctgactatcaaacatagggtttagttgtttgtaacagttagtgcaaggaatgcattggagccatataaggtcactac |
15798417 |
T |
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| Q |
250 |
cggtatctatttgagcata |
268 |
Q |
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| T |
15798418 |
cggtatctgcttgagcata |
15798436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 81 - 268
Target Start/End: Original strand, 24547124 - 24547322
Alignment:
| Q |
81 |
aataggtgtagatgcaattgatttttatccggagaacacgaggttcgtgaatagagtttagaacatgactctaatccacatgcgatgttggagtaagtgg |
180 |
Q |
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|||| |||||| |||||||| |||| ||| ||||||||||||||| |||||||||||||||||||||||| ||||| | ||||||||||||||||||| |
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| T |
24547124 |
aataagtgtagttgcaattg-ttttgatcaggagaacacgaggtt---gaatagagtttagaacatgactctgatccataagcgatgttggagtaagtgg |
24547219 |
T |
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| Q |
181 |
aggag---------------atagggtttagttgtttgtagcagttagtgcaaggaatgcattggaaccatataaggtcactaccggtatctatttgagc |
265 |
Q |
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| T |
24547220 |
aggagctctgaggatcaaacatagggttgagttgtttgtagcagttagtgcaaggaatgcattggagccatataaggtcactaccggtatctacttgagc |
24547319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 24539851 - 24539918
Alignment:
| Q |
186 |
atagggtttagttgtttgtagcagttagtgcaaggaatgcattggaaccatataaggtcactaccggt |
253 |
Q |
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| T |
24539851 |
atagggttttgttgtttatagcatttggtgcaaggaatgcattggaaccatacaaggtcactgccggt |
24539918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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