View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5900_low_9 (Length: 335)
Name: NF5900_low_9
Description: NF5900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5900_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 54969442 - 54969114
Alignment:
| Q |
18 |
gatagatcatcagaagggttttacatccgttccggcatcactgttgtattgaaaaattcaacaattgaagacgggctcgtcatataacaaactcacccat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54969442 |
gatagatcatcagaagggttttacatccgttccggcatcactgttgtattgaaaaattcaacaattgaagacgggctcgtcatataacaaactcacccat |
54969343 |
T |
|
| Q |
118 |
catttgtttgaacgagtttaccatggatttgaggannnnnnnnnnnnnnnnnatgaattg------taaaaataaaaacacaatggatataaatagattg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
54969342 |
catttgtttgaacgagtttaccatggattagaggatttttgtttttgtttttatgaattgtaaaaataaaaataaaaacacaatggatataaatagattg |
54969243 |
T |
|
| Q |
212 |
gcatatcatcca-------------------ctatcttaacatctcataaaaattattgactcaattacacttttaacacactaaaaaatattacattta |
292 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54969242 |
gcatatcatccatcttatattccaattctgtctatcttaacatctcataaaaattattgactcaattacacttttaacacactaaaaaatattacattta |
54969143 |
T |
|
| Q |
293 |
tgttatacttgaattgcaatctctctgct |
321 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
54969142 |
tgttatacttgaattgcaatctctctgct |
54969114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University