View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5901-Insertion-1 (Length: 1122)
Name: NF5901-Insertion-1
Description: NF5901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5901-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 640; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 172 - 924
Target Start/End: Complemental strand, 37002113 - 37001356
Alignment:
| Q |
172 |
gggaaatttttgcagtttcgataaattgatggattagagcaacatcgtcttataaattcatgtagtagaatagtttattgttatcaaattatgacacctc |
271 |
Q |
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| T |
37002113 |
gggaaatttttgcagtttcgataaattgatggattagagcaacatcgtcttatacattcatgtagtagaatagtttattgttatcaaattatgacaccgc |
37002014 |
T |
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| Q |
272 |
tgagttagaaacttgataattaagaaacaaaattgacaaaatgaaatttcatgatcagaagaaatctaagaaagtaggtagtgtcatagtggtaccttag |
371 |
Q |
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| T |
37002013 |
tgagttagaaagttcataattaagaaacaaaattgacaaaatgaaatttcatgatcagaagaaatctaagaaagtaggtagtgtcatagtggtaccttag |
37001914 |
T |
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| Q |
372 |
catgttgaggttcagaaacatcttgataaacaccaaccctaatatttcccgtaaattcaacactaggaacaaaatctccaaccaaaacatcttttttgtc |
471 |
Q |
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| T |
37001913 |
catgttgaggttcagaaacatcttgataaacaccaaccctgatatttcccgtaaattcaacactaggaacaaaatctccaaccaaaacatcttttttgtc |
37001814 |
T |
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| Q |
472 |
aacaaggtccatatcaaagagatgggagaaagacttacaatcaagaactgcaatgatgttaggattaacgttggtgaagaaagggaacgtgggtggaaca |
571 |
Q |
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| T |
37001813 |
aacaaggtccatatcaaagagatgggagaaagacttacaatcaagaactgcaatgatgttaggattaacgttggtgaagaaagggaacgtgggtggaaca |
37001714 |
T |
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| Q |
572 |
ttggtacggaacacagtacttttgtacttgtccattcgtgttctgaagaagttttctggcttctggaaccagaaataatctaacctgtctgataagggac |
671 |
Q |
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| T |
37001713 |
ttggtacggaacacagtacttttgtacttgtccattcgtgttctgaagaagttttctggcttctggaaccagaaataatctaacctgtctgataagggac |
37001614 |
T |
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| Q |
672 |
ctagcaacggccatccgtggcttcccggaatctgccggatcggtagctccgttggccttgctttcggtggagttgctagggacggtggtggtatcggtgg |
771 |
Q |
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| T |
37001613 |
ctagcaacggccatccgtggcttcccggaatctgccggatcggtagctccgttggccttgctttcggtggagttgctagggacggtggtggtatcggtgg |
37001514 |
T |
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| Q |
772 |
tgggagtgacatggtnnnnnnnnnnnnnnnnnnnttcggtggaggtcacactttatggttatgttttgattt-gattggttcaattgcagatattaataa |
870 |
Q |
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| T |
37001513 |
tgggagtgacatggtagagaagaagagaagagagttcggtggaggtcacactttatggttatgttttgatttggtttggttcaattgcagatattaataa |
37001414 |
T |
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| Q |
871 |
ttaagttata----acagactgtaaaaaatcgcaaagtcattcttcaaaaaatttaac |
924 |
Q |
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| T |
37001413 |
ttaagttatactccacagactgtaataaattgcaaagtcattcttcagaaaatttaac |
37001356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 37002274 - 37002189
Alignment:
| Q |
7 |
aaaatgtcattataatctttaaaatttatcgaaattgtaaacacatgaacaatatttcttttgtagtaattgtatggtctaacttg |
92 |
Q |
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| T |
37002274 |
aaaatgtcattataatctttaaaatttatcgaaattgtaaacacatgaacaatatttcttttgtagtaattgtatggtctaacttg |
37002189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 991 - 1102
Target Start/End: Complemental strand, 37001167 - 37001057
Alignment:
| Q |
991 |
atacaaaccttttatttaattcaaggtgttcttagattctttcattcattttaaataattcttatttaattattgtggagggtggtta-cttaattaact |
1089 |
Q |
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| T |
37001167 |
atacaaaccttttatttaattctag-tgttcttagattctttcattcattttaaat-attcttatttaattatttgtgacggtggttaccttatttaact |
37001070 |
T |
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| Q |
1090 |
tcattatctggat |
1102 |
Q |
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| T |
37001069 |
tcattatttggat |
37001057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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